EY692827

Overview
NameEY692827
Unique NameEY692827
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length852
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7710 contig Csv1_Contig7710:27..880. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY692827 vs. ExPASy Swiss-Prot
Match: THF1_SOLTU (Protein THYLAKOID FORMATION1, chloroplastic OS=Solanum tuberosum GN=THF1 PE=2 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 4.012e-66
Identity = 124/199 (62.31%), Postives = 157/199 (78.89%), Query Frame = 1
Query:  172 SLTSVAFTSIGQTSCQRKVNVSSTRSLVSNFEGFRFRTSLFCHCVRFRASSSSSRMIIQCMSTATDVPPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSDEDREAIFQAYITALKEDPEHYRIDAQKLEEWARGQTANSLFEFPSKEGEXEGILNDIAKRPAARE 768
            ++TSV+F++I Q S +RK +VSS+RS+    + FRFR++     V  R+S+S+SR ++ C S++    PTVA+TK+ FL  YKRPIP++YNTVLQELIVQQHL RYK++YQYDPVFALGFVTVYD+LMEGYPS+EDR AIF+AYI ALKEDPE YR DAQKLEEWAR Q AN+L +F SKEGE E I  DIA+R   ++
Sbjct:    3 AVTSVSFSAITQ-SAERKSSVSSSRSI----DTFRFRSNFSFDSVNVRSSNSTSRFVVHCTSSSAADLPTVADTKLKFLTAYKRPIPTVYNTVLQELIVQQHLTRYKKSYQYDPVFALGFVTVYDQLMEGYPSEEDRNAIFKAYIEALKEDPEQYRADAQKLEEWARTQNANTLVDFSSKEGEIENIFKDIAQRAGTKD 196          

HSP 2 Score: 28.1054 bits (61), Expect = 4.012e-66
Identity = 15/28 (53.57%), Postives = 18/28 (64.29%), Query Frame = 2
Query:  770 FSYSRFFAVGLVRFFDW-QLH*PTVLEK 850
            F YSR FAVGL R  +   +  PT+LEK
Sbjct:  198 FCYSRLFAVGLFRLLELANVTDPTILEK 225          
BLAST of EY692827 vs. ExPASy Swiss-Prot
Match: THF1_ORYSJ (Protein THYLAKOID FORMATION1, chloroplastic OS=Oryza sativa subsp. japonica GN=THF1 PE=2 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 1.502e-62
Identity = 109/141 (77.30%), Postives = 124/141 (87.94%), Query Frame = 1
Query:  331 SRMIIQCMSTATDVPPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSDEDREAIFQAYITALKEDPEHYRIDAQKLEEWARGQTANSLFEFPSKEGEXEGILNDIAKR 753
            SR +++C++TA DVPPTVAETKMNFLK YKRPI SIY+TVLQEL+VQQHLMRYK TYQYD VFALGFVTVYD+LMEGYPS+EDR+AIF+AYITAL EDPE YR DAQK+EEWAR Q  NSL EF SK+GE E IL DI++R
Sbjct:   44 SRSVVRCVATAGDVPPTVAETKMNFLKSYKRPILSIYSTVLQELLVQQHLMRYKTTYQYDAVFALGFVTVYDQLMEGYPSNEDRDAIFKAYITALNEDPEQYRADAQKMEEWARSQNGNSLVEFSSKDGEIEAILKDISER 184          

HSP 2 Score: 35.039 bits (79), Expect = 1.502e-62
Identity = 18/36 (50.00%), Postives = 24/36 (66.67%), Query Frame = 2
Query:  746 QKDQRQGKFSYSRFFAVGLVRFFDW-QLH*PTVLEK 850
            ++ Q +G FSYSRFFAVGL R  +      PT+L+K
Sbjct:  183 ERAQGKGSFSYSRFFAVGLFRLLELANATEPTILDK 218          
BLAST of EY692827 vs. ExPASy Swiss-Prot
Match: THF1_ARATH (Protein THYLAKOID FORMATION 1, chloroplastic OS=Arabidopsis thaliana GN=THF1 PE=1 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 7.379e-62
Identity = 121/204 (59.31%), Postives = 149/204 (73.04%), Query Frame = 1
Query:  172 SLTSVAFTSIGQTSCQRKVNVSSTRSLVSNFEGFRFRTSLFCHCVRFRA----SSSSSRMIIQCMSTAT-DVPPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSDEDREAIFQAYITALKEDPEHYRIDAQKLEEWARGQTANSLFEFPSKEGEXEGILNDIAKRPAARE 768
            +++S++F ++GQ+              +SNF   R   S    C +F      S S+S+ +I CMS  T DVPP V+ETK  FLK YKRPIPSIYNTVLQELIVQQHLMRYK+TY+YDPVFALGFVTVYD+LMEGYPSD+DR+AIF+AYI AL EDP+ YRIDAQK+EEWAR QT+ SL +F SKEG+ E +L DIA R  ++E
Sbjct:    5 AISSLSFPALGQSD------------KISNFASSRPLASAIRICTKFSRLSLNSRSTSKSLIHCMSNVTADVPP-VSETKSKFLKAYKRPIPSIYNTVLQELIVQQHLMRYKKTYRYDPVFALGFVTVYDQLMEGYPSDQDRDAIFKAYIEALNEDPKQYRIDAQKMEEWARSQTSASLVDFSSKEGDIEAVLKDIAGRAGSKE 195          

HSP 2 Score: 30.8018 bits (68), Expect = 7.379e-62
Identity = 17/28 (60.71%), Postives = 19/28 (67.86%), Query Frame = 2
Query:  770 FSYSRFFAVGLVRFFDW-QLH*PTVLEK 850
            FSYSRFFAVGL R  +      PTVL+K
Sbjct:  197 FSYSRFFAVGLFRLLELASATDPTVLDK 224          
BLAST of EY692827 vs. ExPASy Swiss-Prot
Match: THF1_NOSP7 (Protein thf1 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=thf1 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.268e-22
Identity = 50/132 (37.88%), Postives = 81/132 (61.36%), Query Frame = 1
Query:  379 TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSDEDREAIFQAYITALKEDPEHYRIDAQKLEEWARGQTANSLF------EFPSKEGEXEGILNDIAKRP 756
            TV++TK  F  L+ RPI +IY  V++EL+V+ HL+     + Y+P++ALG VT +DR M+GY  + D+E+IF A   A+++DP+HYR DA++L+  A+G     L        +  ++ + +  L  IA  P
Sbjct:    6 TVSDTKRTFYNLHTRPINTIYRRVVEELMVEMHLLSVNIDFSYNPIYALGVVTTFDRFMQGYEPERDQESIFNALCRAIEQDPQHYRQDAERLQAIAKGLPVKDLIGWLGQTTYLDRDADLQAQLQAIANNP 137          
BLAST of EY692827 vs. ExPASy Swiss-Prot
Match: THF1_ACAM1 (Protein thf1 OS=Acaryochloris marina (strain MBIC 11017) GN=thf1 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 9.279e-22
Identity = 48/131 (36.64%), Postives = 81/131 (61.83%), Query Frame = 1
Query:  379 TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSDEDREAIFQAYITALKEDPEHYRIDAQKLEEWARGQTANSLFEFPSKEG-----EXEGILNDIAKRP 756
            TV++TK  F  ++ RP+ S+Y  V++EL+V+ HL+R    ++YDP+FALG  T +DR M+GY  + D++AIF A   A + DP   + D Q+L E A+ ++A  + ++ ++       E +  L +IA+ P
Sbjct:    6 TVSDTKRAFYSIHTRPVNSVYRRVVEELMVEMHLLRVNEDFRYDPIFALGVTTSFDRFMDGYQPENDKDAIFSAICKAQEADPVQMKKDGQRLTELAQSKSAQEMLDWITQAANSGGDELQWQLRNIAQNP 136          

HSP 2 Score: 23.8682 bits (50), Expect = 9.279e-22
Identity = 9/12 (75.00%), Postives = 10/12 (83.33%), Query Frame = 2
Query:  767 KFSYSRFFAVGL 802
            KF YSR FA+GL
Sbjct:  137 KFKYSRLFAIGL 148          
BLAST of EY692827 vs. ExPASy Swiss-Prot
Match: THF1_TRIEI (Protein thf1 OS=Trichodesmium erythraeum (strain IMS101) GN=thf1 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.208e-21
Identity = 48/108 (44.44%), Postives = 69/108 (63.89%), Query Frame = 1
Query:  379 TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSDEDREAIFQAYITALKEDPEHYRIDAQKLEEWARGQTANSLFEF 702
            TV++TK  F   + RPI SIYN V++EL+V+ HL+     Y Y+P +ALG VT +DR M+GY   ED+ +IF A I   +EDP  YR DA+ LE+ A   +A+ +  +
Sbjct:    6 TVSDTKKTFYHFHTRPINSIYNRVIEELLVEMHLISVNVDYSYNPFYALGVVTAFDRFMQGYSPQEDKTSIFNALIQGQEEDPNKYRSDAKGLEDLAGKISASDILSW 113          

HSP 2 Score: 24.2534 bits (51), Expect = 1.208e-21
Identity = 13/24 (54.17%), Postives = 14/24 (58.33%), Query Frame = 2
Query:  743 LQKDQR----QGKFSYSRFFAVGL 802
            LQ D R      KF YSR FA+GL
Sbjct:  126 LQDDLRAISENSKFRYSRLFAIGL 149          
BLAST of EY692827 vs. ExPASy Swiss-Prot
Match: THF1_ANASP (Protein thf1 OS=Anabaena sp. (strain PCC 7120) GN=thf1 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.209e-21
Identity = 46/111 (41.44%), Postives = 74/111 (66.67%), Query Frame = 1
Query:  379 TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSDEDREAIFQAYITALKEDPEHYRIDAQKLEEWARGQTANSLFEFPSK 711
            TV++TK  F  L+ RPI +IY  V++EL+V+ HL+     + Y+P++ALG VT +DR MEGY  + D+E+IF A   A++++P+ YR DA++L+  A+    N L  + S+
Sbjct:    6 TVSDTKRTFYALHTRPINTIYRRVVEELMVEMHLLSVNVDFSYNPIYALGVVTTFDRFMEGYQPERDKESIFSAICQAVEQEPQRYRQDAERLQAVAQSLPVNDLVAWLSQ 116          

HSP 2 Score: 23.483 bits (49), Expect = 1.209e-21
Identity = 10/20 (50.00%), Postives = 11/20 (55.00%), Query Frame = 2
Query:  743 LQKDQRQGKFSYSRFFAVGL 802
            LQ       F YSR FA+GL
Sbjct:  130 LQAIANNSNFKYSRLFAIGL 149          
BLAST of EY692827 vs. ExPASy Swiss-Prot
Match: THF1_CYAP4 (Protein thf1 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=thf1 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 3.462e-21
Identity = 57/140 (40.71%), Postives = 82/140 (58.57%), Query Frame = 1
Query:  373 PPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSDEDREAIFQAYITALKEDPEHYRIDAQKLEEWARGQTANSLFEFPSKEG-----EXEGILNDIAKRPAAREIQL 777
            P TV++TK  F   + RPI SIY  V++EL+V+ HL+R  +T+ YDPVFALG VT ++R M+GY    D+ +IF A   A + DP+  + DAQ+L    RGQ+  SL ++ S        E +  L  IA  P  +  +L
Sbjct:    4 PRTVSDTKRAFYHNHARPINSIYRRVVEELLVEIHLLRVNQTFVYDPVFALGVVTTFERFMQGYHPPADQTSIFNAICLAQELDPQQVQQDAQELLGRVRGQSLESLLDWISTAASLGGDEQQNRLRAIASNPTFKYSRL 143          

HSP 2 Score: 22.3274 bits (46), Expect = 3.462e-21
Identity = 9/11 (81.82%), Postives = 9/11 (81.82%), Query Frame = 2
Query:  770 FSYSRFFAVGL 802
            F YSR FAVGL
Sbjct:  138 FKYSRLFAVGL 148          
BLAST of EY692827 vs. ExPASy Swiss-Prot
Match: THF1_ANAVT (Protein thf1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=thf1 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 4.505e-21
Identity = 49/132 (37.12%), Postives = 81/132 (61.36%), Query Frame = 1
Query:  379 TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSDEDREAIFQAYITALKEDPEHYRIDAQKLEEWARGQTANSLFEFPS------KEGEXEGILNDIAKRP 756
            TV++TK  F  L+ RPI +IY  V++EL+V+ HL+     + Y+P++ALG VT +DR M+GY  + D+E+IF A   A++++P+ YR DA++L+  A+    N L  + S      ++ + +  L  IA  P
Sbjct:    6 TVSDTKRTFYALHTRPINTIYRRVVEELMVEMHLLSVNVDFSYNPIYALGVVTTFDRFMQGYQPERDKESIFSAICQAVEQEPQRYRQDAERLKAVAQSLPVNDLVAWLSQANHLQQDADLQAQLQAIASNP 137          

HSP 2 Score: 22.3274 bits (46), Expect = 4.505e-21
Identity = 10/20 (50.00%), Postives = 11/20 (55.00%), Query Frame = 2
Query:  743 LQKDQRQGKFSYSRFFAVGL 802
            LQ       F YSR FA+GL
Sbjct:  130 LQAIASNPNFKYSRLFAIGL 149          
BLAST of EY692827 vs. ExPASy Swiss-Prot
Match: THF1_CYAP7 (Protein thf1 OS=Cyanothece sp. (strain PCC 7424) GN=thf1 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.791e-19
Identity = 45/105 (42.86%), Postives = 70/105 (66.67%), Query Frame = 1
Query:  379 TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSDEDREAIFQAYITALKEDPEHYRIDAQKLEEWARGQTANSL 693
            TV+++K +F   + RPI S+Y  V++EL+V+ HL+     +QYDPV+ALG VT + R M+GY  D D+E+IF A   ++  DP+ YR DA+++ E A+  +A  L
Sbjct:    6 TVSDSKRDFYTKHTRPINSVYRRVVEELMVEMHLLSVNSDFQYDPVYALGVVTSFQRFMQGYRPDADKESIFNALCQSVGGDPQQYRQDAERMIESAKQLSAQQL 110          

HSP 2 Score: 20.7866 bits (42), Expect = 1.791e-19
Identity = 6/12 (50.00%), Postives = 10/12 (83.33%), Query Frame = 2
Query:  767 KFSYSRFFAVGL 802
            K+ Y+R FA+G+
Sbjct:  139 KYKYTRLFAIGI 150          
The following BLAST results are available for this feature:
BLAST of EY692827 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
THF1_SOLTU4.012e-6662.31Protein THYLAKOID FORMATION1, chloroplastic OS=Sol... [more]
THF1_ORYSJ1.502e-6277.30Protein THYLAKOID FORMATION1, chloroplastic OS=Ory... [more]
THF1_ARATH7.379e-6259.31Protein THYLAKOID FORMATION 1, chloroplastic OS=Ar... [more]
THF1_NOSP72.268e-2237.88Protein thf1 OS=Nostoc punctiforme (strain ATCC 29... [more]
THF1_ACAM19.279e-2236.64Protein thf1 OS=Acaryochloris marina (strain MBIC ... [more]
THF1_TRIEI1.208e-2144.44Protein thf1 OS=Trichodesmium erythraeum (strain I... [more]
THF1_ANASP1.209e-2141.44Protein thf1 OS=Anabaena sp. (strain PCC 7120) GN=... [more]
THF1_CYAP43.462e-2140.71Protein thf1 OS=Cyanothece sp. (strain PCC 7425 / ... [more]
THF1_ANAVT4.505e-2137.12Protein thf1 OS=Anabaena variabilis (strain ATCC 2... [more]
THF1_CYAP71.791e-1942.86Protein thf1 OS=Cyanothece sp. (strain PCC 7424) G... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-700-004-H04-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692827 ID=EY692827; Name=EY692827; organism=Citrus sinensis; type=EST; length=852bp
CCACGCCGTCCGCGCTTTTCCCGAGTGAAGGGGCANAAAAAAAAACCCAA
AAAAAAAAAAAAAAAAATTTCAGAGGGAAGAAAACCAAATGCAAANCCTA
TCCGATTCCTGTGTCTGCACTAACTAATACATTCACAAATTTAAATTTAA
TAATATAAATTACGATGGCGGTCTCTTACTTCAGTGGCGTTTACATCAAT
CGGTCAAACTTCTTGTCAGAGGAAAGTCAACGTCTCGTCAACTCGTTCCT
TAGTTTCTAATTTTGAAGGCTTTCGATTCCGTACGAGTTTGTTCTGCCAT
TGTGTCCGTTTTAGAGCTTCAAGTTCAAGTTCTCGTATGATTATTCAATG
CATGTCCACAGCTACTGATGTGCCTCCTACTGTGGCCGAGACAAAGATGA
ATTTTCTGAAGTTATATAAGAGACCAATCCCCAGTATTTACAACACCGTT
CTACAGGAATTGATTGTCCAACAACATTTGATGAGGTACAAAAGAACATA
CCAATATGACCCTGTGTTTGCCCTTGGATTTGTCACTGTATATGATCGAC
TCATGGAAGGCTATCCAAGTGATGAGGATCGAGAAGCCATCTTCCAAGCA
TACATTACGGCACTGAAGGAGGATCCAGAGCATTACAGAATTGATGCACA
AAAGTTAGAGGAATGGGCTCGGGGTCAGACTGCCAATTCATTATTTGAGT
TCCCATCTAAAGAAGGAGAAGNTGAGGGGATATTGAACGACATTGCAAAA
AGACCAGCGGCAAGGGAAATTCAGCTACAGCCGTTTCTTTGCTGTTGGGC
TGGTTCGCTTCTTTGACTGGCAATTGCACTGACCCACAGTGTTAGAAAAG
CT
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