EY692822

Overview
NameEY692822
Unique NameEY692822
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length915
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY692822_ssr219 microsatellite EY692822_ssr219:219..233. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of EY692822 vs. ExPASy Swiss-Prot
Match: SKI24_ARATH (F-box protein SKIP24 OS=Arabidopsis thaliana GN=SKIP24 PE=1 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 1.553e-32
Identity = 76/184 (41.30%), Postives = 109/184 (59.24%), Query Frame = 3 
Query:   84 VQNRSFTCNDLCCLSIACWRLHRLSAKHSLWSQFLFYYFPNNDXXXXXXXXXXXXXXVYRTRFDKDRERKLAVHRKAVLMKESQVDPNSMKV*EIESKLRDEA**LKYTSAELSNLHTA*QASVALNVWHP*FVKGRHKHII*QIVDPAESTSHALDMELKLCHHHIAGYENAYRDHMPKLDNA 635
            V++ +F+  DLCC+SI+  RL RLS   SLW   L + FPN+               +Y TRF++++ERKLA HR+A+L KES++     ++ E+E++L DEA  L+ +S + S+L    QASVALNVW P  V+GR K ++ Q   P E    AL+ME+KLC   I G   A R+   + D A
Sbjct:   19 VKSSTFSYKDLCCISISSRRLFRLSCDDSLWDLLLVHDFPNH-IVSASSSSESPTKFIYMTRFEREKERKLAAHRRALLRKESEISEWGRRIRELEARLSDEAERLQSSSLQFSDLLKVRQASVALNVWQPEVVRGRQKQMVEQNAVPVEGRLRALEMEMKLCKQQIMGLNRALREVKHRYDIA 201

HSP 2 Score: 24.6386 bits (52), Expect = 1.553e-32
Identity = 15/41 (36.59%), Postives = 21/41 (51.22%), Query Frame = 1 
Query:  640 KETHVMKYHPLLQCNLTRLDDNELN--TRAINRNLHNFTGD 756
            KE   MKYHPL      R  D   N  T+ +  ++ N++GD
Sbjct:  203 KELESMKYHPLRDYKSIRNGDQGSNGKTKKLKTSI-NYSGD 242
The following BLAST results are available for this feature:
BLAST of EY692822 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
SKI24_ARATH1.553e-3241.30F-box protein SKIP24 OS=Arabidopsis thaliana GN=SK... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-700-004-G10-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692822 ID=EY692822; Name=EY692822; organism=Citrus sinensis; type=EST; length=915bp
CCACGCGTCCGAACTTACCAGTCTATTATGTTATCTAATGCTCTACCCGA
CGAGCTCGTGTAGGAAAATTCTGGAATCCGGTAGTTCAAAACCGCAGTTT
CACCTGTAATGATTTGTGCTGCCTCTCGATCGCCTGTTGGCGCCTCCACC
GATTGTCCGCAAAACACTCCCTCTGGTCCCAGTTTCTCTTCTACTATTTC
CCTAACAATGACTCCCATTCATCATCATCATCATCGGCTTCATCCATCAA
ATCCGTCTATCGAACTAGATTTGATAAGGACAGGGAGAGGAAACTAGCGG
TGCATAGAAAGGCTGTGCTGATGAAAGAGAGTCAAGTGGACCCAAATTCC
ATGAAGGTTTGAGAAATTGAAAGTAAGTTGCGAGACGAGGCCTGATAATT
GAAATATACATCTGCCGAGCTATCTAATTTACACACAGCCTAGCAAGCTT
CTGTGGCGTTGAATGTGTGGCACCCATAATTTGTTAAGGGTAGACACAAA
CATATAATTTAGCAAATTGTTGATCCTGCTGAATCTACATCGCATGCACT
CGATATGGAACTTAAGCTATGCCATCATCACATTGCAGGTTATGAAAACG
CCTATAGAGACCATATGCCAAAGCTTGACAATGCACAAGAAAGAGACCCA
TGTCATGAAATATCATCCTCTACTACAGTGTAACTTGACTAGACTGGATG
ACAATGAACTCAACACAAGAGCAATAAATCGAAACCTGCATAATTTTACT
GGAGATGGATGTCTGAGGTAGTCATAACTCGAATAAATAAACATTTGAGG
TTCACATCTGACTGTGCAGTCTTGGNTGTTGCCACTGAGACAAAATGTAC
AAATCACAGGCTTCTACAGACTTGGGGGCAAAAAGGGGATCCAAAATTTT
TGGACACTTAAGTTT
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