EY692809

Overview
NameEY692809
Unique NameEY692809
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length945
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY692809 vs. ExPASy Swiss-Prot
Match: CHUP1_ARATH (Protein CHUP1, chloroplastic OS=Arabidopsis thaliana GN=CHUP1 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.900e-22
Identity = 67/159 (42.14%), Postives = 87/159 (54.72%), Query Frame = 2 
Query:  110 LESLMLRNTSDSVAITTFGKMDQXXXXXXXXXXXXHIRTRXXXXXXXXXXXXX---FQLMSKSVEGVLAEKYPAYKDRHKLALEREKQIKEKAEKARAYRFRDNSNFDSXXXXXXXXXXXXXXXXIVSGDSSDQSHDD---RAAE-SQTISKMKFSQIE 565
            LESLM+RN  +SVAITTFG++DQ             IRT+                F +MSKSV+ VL EKYPAYKDRHKLA+EREK IK KA++ARA RF  N                       +GD S++S++    +A+E + T++KMK   IE
Sbjct:  487 LESLMIRNAGESVAITTFGQVDQESPGTPETPNLPRIRTQQQASSPGEGLNSVAASFHVMSKSVDNVLDEKYPAYKDRHKLAVEREKHIKHKADQARAERFGGNVALPPKLAQLKEKRVVVPSVITATGDQSNESNESNEGKASENAATVTKMKLVDIE 645
The following BLAST results are available for this feature:
BLAST of EY692809 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
CHUP1_ARATH5.900e-2242.14Protein CHUP1, chloroplastic OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-700-004-F08-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692809 ID=EY692809; Name=EY692809; organism=Citrus sinensis; type=EST; length=945bp
CCACGCGTCCGAAAGCAAANATGATTTAAGTGCTCTTTCATCACCAGCAA
GATCTATTTCAGGTAGCTCTCCAAGCAGGATGAGCATGAGCCATCGACCA
AGGGGTCCATTGGAATCTTTGATGCTGAGGAATACAAGTGATAGTGTGGC
CATCACTACATTTGGGAAAATGGACCAGGAATTACCTGATTTGCCAGAAA
CTCCAACCCTCCCACACATTAGAACACGGGTTTCTTCCAGTGACTCACTG
AACACTGTTTCAGATTCATTCCAGTTGATGTCAAAATCAGTAGAAGGAGT
TCTAGCGGAAAAATATCCTGCATACAAAGACCGGCACAAGTTGGCCTTAG
AAAGGGAGAAGCAAATTAAGGAAAAAGCAGAGAAAGCAAGAGCTTACAGG
TTTCGTGACAATTCAAATTTTGACTCCAAACACCCTACCTTGCCACCAAA
ACTTGCTCTATTAAAAGAGAAGCCAATAGTTTCTGGTGATTCAAGTGATC
AATCACATGATGACAGGGCTGCTGAATCTCAAACAATAAGCAAAATGAAA
TTTTCCCAAATTGAAAAGAGGCCTCCTAGAGTGTTTAGACCACCTCCTAA
ACCGTCTGGTGGTGCTCCTGCTGGTACAAATGCAAATCCTTCCAGTGGCA
CACCACCAGCTCCACCTTCTNCACCTGGTGCTACTNCACCTNCACCCCCA
CACCGNCACCAGGTGGACCACCTCCTCCACCTTCTNCNNCCAGAAACTTG
CCCAGAGAGTGGGAAGTGGTGATAAAGTTAACGAGCTCCTGAACTTGTTG
AATTTATCACACATTGTNAAACGTGAGGCAAAGAGGATCATCATCCTGAT
TCATCACTTTTAACATAAAAGCTAGGAGACATGATTGGGGAATTGAAACC
AATATATTCTTTTACTGGAAAACCTTGGGAAACTAAGGGGATTTT
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