EY692788

Overview
NameEY692788
Unique NameEY692788
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length448
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY692788 vs. ExPASy Swiss-Prot
Match: SODF_NICPL (Superoxide dismutase [Fe], chloroplastic (Fragment) OS=Nicotiana plumbaginifolia GN=SODB PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 7.922e-15
Identity = 43/91 (47.25%), Postives = 54/91 (59.34%), Query Frame = 1
Query:    4 FFWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIGAALTLFGSGYVWLVLKREERSSPWLNI-KCINXLVWMTSP-HQFDMWEHAYYL 270
            FFWESM+P GG  P   +LE I +DFGS+  F ++F  AA T FGSG+ WL  K EE+    +      N LV   +P    D+WEHAYYL
Sbjct:   80 FFWESMKPNGGGEPSGELLELINRDFGSYDAFVKEFKAAAATQFGSGWAWLAYKPEEKKLALVKTPNAENPLVLGYTPLLTIDVWEHAYYL 170          
BLAST of EY692788 vs. ExPASy Swiss-Prot
Match: SODF_SOYBN (Superoxide dismutase [Fe], chloroplastic OS=Glycine max GN=SODB PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.765e-14
Identity = 45/108 (41.67%), Postives = 57/108 (52.78%), Query Frame = 1
Query:    1 DFFWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIGAALTLFGSGYVWLVLKR-----EERSSP-----------WLNIKCINXLVW--MTSPHQFDMWEHAYYL 270
            DFFWE M+PGGG  P   +LE IE+DFGSF  F ++F  AA T FGSG+ WL  +      E  ++P             +   +N LVW         D+WEHAYYL
Sbjct:  104 DFFWECMKPGGGGKPSGELLELIERDFGSFVKFLDEFKAAAATQFGSGWAWLAYRARKFDGENVANPPSPDEDNKLVVLKSPNAVNPLVWGGYYPLLTIDVWEHAYYL 211          
BLAST of EY692788 vs. ExPASy Swiss-Prot
Match: SODF_ARATH (Superoxide dismutase [Fe], chloroplastic OS=Arabidopsis thaliana GN=SODB PE=1 SV=4)

HSP 1 Score: 75.8702 bits (185), Expect = 8.759e-14
Identity = 40/91 (43.96%), Postives = 53/91 (58.24%), Query Frame = 1
Query:    1 DFFWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIGAALTLFGSGYVWLVLKREERSSPWLNIKCINXLVWMTSP-HQFDMWEHAYYL 270
            +FFWESM+PGGG  P   +L  +E+DF S+  F E+F  AA T FG+G+ WL     E+         +N LV  + P    D+WEHAYYL
Sbjct:   88 EFFWESMKPGGGGKPSGELLALLERDFTSYEKFYEEFNAAAATQFGAGWAWLAYS-NEKLKVVKTPNAVNPLVLGSFPLLTIDVWEHAYYL 177          
BLAST of EY692788 vs. ExPASy Swiss-Prot
Match: SODF_LEGPH (Superoxide dismutase [Fe] OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=sodB PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 4.347e-13
Identity = 43/99 (43.43%), Postives = 53/99 (53.54%), Query Frame = 1
Query:    4 FFWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIGAALTLFGSGYVWLVLKREERSSPWLNIKCINXLVWMTSPHQ----FDMWEHAYYLITR*QR 288
            F+W SM P GG  PK  + E I K FGSF  FKE+F   A T FGSG+ WLV   +++S     I   N    MT         D+WEHAYY+  R +R
Sbjct:   76 FYWHSMSPNGGGEPKGRLAEAINKSFGSFAAFKEQFSQTAATTFGSGWAWLV---QDQSGALKIINTSNAGTPMTEGLNALLTCDVWEHAYYIDYRNRR 171          
BLAST of EY692788 vs. ExPASy Swiss-Prot
Match: SODF_RICTY (Superoxide dismutase [Mn/Fe] OS=Rickettsia typhi GN=sodB PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.157e-12
Identity = 42/104 (40.38%), Postives = 56/104 (53.85%), Query Frame = 1
Query:    4 FFWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIGAALTLFGSGYVWLV--------LKREERSSPWLNIKCINXLVWMTSPHQFDMWEHAYYLITR*QRT 291
            FFW S++P GG  P   V EQI +DFGSF  F E+F   AL  FGSG+VW+V        +K     +P +N+        M      D+WEHAYY+  R +R+
Sbjct:   92 FFWYSIKPHGGGKPSGKVFEQISQDFGSFEQFCEQFKQEALGQFGSGWVWVVYNNNKLQIIKTSNADTPIVNL--------MKPILVCDVWEHAYYIDYRNKRS 187          
BLAST of EY692788 vs. ExPASy Swiss-Prot
Match: SODF_RICFE (Superoxide dismutase [Mn/Fe] OS=Rickettsia felis GN=sodB PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 3.680e-12
Identity = 42/103 (40.78%), Postives = 53/103 (51.46%), Query Frame = 1
Query:    4 FFWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIGAALTLFGSGYVWLV--------LKREERSSPWLNIKCINXLVWMTSPHQFDMWEHAYYLITR*QR 288
            FFW S++P GG  P   +LEQI KDFGSF  F E+F   A+  FGSG+ WLV        +K     +P  N         M      D+WEHAYY+  R +R
Sbjct:   92 FFWHSIKPQGGGKPSGKILEQINKDFGSFEGFCEQFKQEAVGQFGSGWAWLVYHDNRLQIIKTANAGTPIAN--------GMKPLLACDVWEHAYYIDYRNKR 186          
BLAST of EY692788 vs. ExPASy Swiss-Prot
Match: SODM_MACNE (Superoxide dismutase [Mn], mitochondrial OS=Macaca nemestrina GN=SOD2 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.398e-11
Identity = 35/91 (38.46%), Postives = 51/91 (56.04%), Query Frame = 1
Query:    7 FWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIGAALTLFGSGYVWLVLKREE---RSSPWLNIKCINXLVWMTSPHQFDMWEHAYYL 270
            FW ++ P GG  PK  +LE I++DFGSF  +KEK   A++ + GSG+ WL   +E    + +  LN   +     +      D+WEHAYYL
Sbjct:  101 FWTNLSPNGGGEPKGELLEAIKRDFGSFEKYKEKLTAASVGVQGSGWGWLGFNKERGQLQIAACLNQDPLQGTTGLIPLLGIDVWEHAYYL 191          
BLAST of EY692788 vs. ExPASy Swiss-Prot
Match: SODM_BACHD (Superoxide dismutase [Mn] OS=Bacillus halodurans GN=sodA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.398e-11
Identity = 38/91 (41.76%), Postives = 49/91 (53.85%), Query Frame = 1
Query:    7 FWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIGAALTLFGSGYVWLVL---KREERSSPWLNIKCINXLVWMTSPHQFDMWEHAYYL 270
            FW+ + P GG  P   + + I  +FGSF  FKEKF  AA   FGSG+ WLV+   K E  S+P  +   +      T     D+WEHAYYL
Sbjct:   85 FWQILSPNGGGAPTGELADAINAEFGSFDQFKEKFADAAANRFGSGWAWLVVNDGKLEITSTPNQDTPLMEG---KTPILGLDVWEHAYYL 172          
BLAST of EY692788 vs. ExPASy Swiss-Prot
Match: SODF_SYNE7 (Superoxide dismutase [Fe] OS=Synechococcus elongatus (strain PCC 7942) GN=sodB PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.398e-11
Identity = 36/89 (40.45%), Postives = 45/89 (50.56%), Query Frame = 1
Query:    4 FFWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIGAALTLFGSGYVWLVLKREERSSPWLNIKCINXLVWMTSPHQFDMWEHAYYL 270
            F+W S++P GG  P   + ++I  DFGSF NF  +F  AA T FGSG+ WLVL                     T     D+WEHAYYL
Sbjct:   81 FYWNSIKPNGGGAPTGALADKIAADFGSFENFVTEFKQAAATQFGSGWAWLVLDNGTLKITKTGNADTPIAHGQTPLLTIDVWEHAYYL 169          
BLAST of EY692788 vs. ExPASy Swiss-Prot
Match: SODF_RICCN (Superoxide dismutase [Mn/Fe] OS=Rickettsia conorii GN=sodB PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.826e-11
Identity = 40/103 (38.83%), Postives = 53/103 (51.46%), Query Frame = 1
Query:    4 FFWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIGAALTLFGSGYVWL--------VLKREERSSPWLNIKCINXLVWMTSPHQFDMWEHAYYLITR*QR 288
            FFW S++P GG  P   +LEQI KDFGSF  F E+F   A+  FGSG+ WL        ++K     +P  +         M      D+WEHAYY+  R +R
Sbjct:   92 FFWHSIKPQGGGKPSGKILEQINKDFGSFEEFCEQFKQEAVGQFGSGWAWLIYHDNRLQIIKTANAGTPIAH--------GMKPLLACDVWEHAYYIDYRNKR 186          
The following BLAST results are available for this feature:
BLAST of EY692788 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
SODF_NICPL7.922e-1547.25Superoxide dismutase [Fe], chloroplastic (Fragment... [more]
SODF_SOYBN1.765e-1441.67Superoxide dismutase [Fe], chloroplastic OS=Glycin... [more]
SODF_ARATH8.759e-1443.96Superoxide dismutase [Fe], chloroplastic OS=Arabid... [more]
SODF_LEGPH4.347e-1343.43Superoxide dismutase [Fe] OS=Legionella pneumophil... [more]
SODF_RICTY2.157e-1240.38Superoxide dismutase [Mn/Fe] OS=Rickettsia typhi G... [more]
SODF_RICFE3.680e-1240.78Superoxide dismutase [Mn/Fe] OS=Rickettsia felis G... [more]
SODM_MACNE1.398e-1138.46Superoxide dismutase [Mn], mitochondrial OS=Macaca... [more]
SODM_BACHD1.398e-1141.76Superoxide dismutase [Mn] OS=Bacillus halodurans G... [more]
SODF_SYNE71.398e-1140.45Superoxide dismutase [Fe] OS=Synechococcus elongat... [more]
SODF_RICCN1.826e-1138.83Superoxide dismutase [Mn/Fe] OS=Rickettsia conorii... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-700-004-D11-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692788 ID=EY692788; Name=EY692788; organism=Citrus sinensis; type=EST; length=448bp
GACTTCTTTTGGGAGTCCATGCAGCCTGGAGGAGGTGACATACCCAAATA
TGGAGTACTTGAGCAGATTGAAAAGGACTTTGGTTCCTTTACAAATTTCA
AAGAGAAGTTTATAGGAGCTGCCCTCACATTGTTTGGCTCTGGCTATGTT
TGGCTTGTTTTGAAGAGGGAAGAGAGAAGCTCGCCGTGGTTAAACATCAA
ATGCATAAATNCACTTGTGTGGATGACATCCCCACATCAGTTTGATATGT
GGGAGCATGCTTATTATCTGATTACAAGATGACAAAGGACTATGCAAACG
TGTTATGAACCACCTGTGTCTTGAATGCTGCATGTCACGAATGGCTGTGC
AAAGCCTTTCTGATTTAGGCGACCCAAATCCCATGCTTGAAAGTTCTTTT
CAAAACTCAACAAAGATGTGCAAGCCCTAAGCACTGCTAAGGTTAAAA
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