EY692774

Overview
NameEY692774
Unique NameEY692774
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length893
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY692774_ssr100 microsatellite EY692774_ssr100:100..111. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY692774 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1)

HSP 1 Score: 318.931 bits (816), Expect = 2.399e-86
Identity = 161/235 (68.51%), Postives = 182/235 (77.45%), Query Frame = 3
Query:  129 IGTRL-PDIYSNSGRIQARFGFGKRKTAPKKSKQSSGSSDRPLWYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYPGQPLPFSXXXXXXXXXXXXGYIEFQRTXSLTRRETL-PGGKFFDPLAWPLTRKESHPQLQKSARPLARL 827
            +GTR+ P I+  SGR  A FGFGK+K APKKS + + ++DRPLWYPGA +P+WLDGSLVGDYGFDPFGLGKPAEYLQ+D DSLDQNLAKN AGD+IGTR EA+D +STP QPY+EVFG+QRFRECELIHGRWAMLATLGAL+VEWLTG+TWQDAGKVELV+GSSY GQPLPFS            GYIEFQR   L   + L PGGKFFDPL       E   QLQ +    ARL
Sbjct:   15 MGTRVAPGIHPGSGRFTAVFGFGKKKAAPKKSAKKTVTTDRPLWYPGAISPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGL-AADPEKTAQLQLAEIKHARL 248          
BLAST of EY692774 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1)

HSP 1 Score: 308.916 bits (790), Expect = 2.482e-83
Identity = 154/212 (72.64%), Postives = 172/212 (81.13%), Query Frame = 3
Query:  129 IGTRL-PDIYSNSGRIQARFGFGKRKTAPKKSKQSSGSSDRPLWYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYPGQPLPFSXXXXXXXXXXXXGYIEFQRTXSLTRRETL-PGGKFFDPL 758
            +GTR+  DI SNS R  ARFGFG +K +PKK+K  +  SDRPLW+PGAK+PE+LDGSLVGDYGFDPFGLGKPAEYLQ+D DSLDQNLAKN  G++IGTR EA D +STP QPY+EVFGLQRFRECELIHGRWAMLATLGA+TVEWLTG+TWQDAGKVELV+GSSY GQPLPFS            GYIEFQR   L   + L PGGKFFDPL
Sbjct:   14 MGTRVVSDISSNSSRFTARFGFGTKKASPKKAK--TVISDRPLWFPGAKSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWLTGVTWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPL 223          
BLAST of EY692774 vs. ExPASy Swiss-Prot
Match: CB4C_ARATH (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=1 SV=1)

HSP 1 Score: 281.952 bits (720), Expect = 3.250e-75
Identity = 140/213 (65.73%), Postives = 159/213 (74.65%), Query Frame = 3
Query:  132 GTRLPDIYSNSGRIQARFGF--GKRKTAP--KKSKQSSGSSDRPLWYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYPGQPLPFSXXXXXXXXXXXXGYIEFQRTXSLTRRETLPGGKFFDPL 758
            G R+ D    +GR+QARFGF  GK+K AP  KKS+Q     DR +W+PGA  PEWLDGS++GD GFDPFGLGKPAEYLQYD+D LDQNLAKN AGDIIG   E+S+++ TP QPYTEVFG+QRFRECELIHGRWAML TLGA+ VE LTGI WQDAGKVELVEGSSY GQPLPFS            GYIEFQR   L   + +  G +FDPL
Sbjct:   14 GIRIQDPRPGTGRVQARFGFSFGKKKPAPPPKKSRQVQDDGDRLVWFPGANPPEWLDGSMIGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGIIQESSEIKPTPFQPYTEVFGIQRFRECELIHGRWAMLGTLGAIAVEALTGIAWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVLVVGYIEFQRNSELDPEKRIYPGGYFDPL 226          
BLAST of EY692774 vs. ExPASy Swiss-Prot
Match: CB29_CHLRE (Chlorophyll a-b binding protein CP29 OS=Chlamydomonas reinhardtii GN=Lhcb4 PE=1 SV=3)

HSP 1 Score: 160.999 bits (406), Expect = 8.360e-39
Identity = 97/217 (44.70%), Postives = 115/217 (53.00%), Query Frame = 3
Query:  198 RKTAPKKSKQSSGSSDRP-----LWYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTP--LQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYPGQPLPFSXXXXXXXXXXXXGYIEFQRTXSLTRRETLPGGKFFDPLAWPLTRKESHPQLQKSARPLARL 827
            +K A     +S G   R      LW P    PEWLDGSL GD GFDP GL KP+E++    D  DQN AKN  G +        D  S+   L PY+EVFGL RFRECELIHGRWAMLA LGAL  E  TG++W +AGKVEL +G+SY G  LPFS            G  EF R       +    G  FDPL      +E   +L+ +    ARL
Sbjct:   29 KKVATSTGTRSGGVGYRKYQGDALWLPNTTRPEWLDGSLPGDRGFDPLGLSKPSEFVVIGVDENDQNAAKNNKGSVEAIVQATPDEVSSENRLAPYSEVFGLARFRECELIHGRWAMLACLGALVAEATTGVSWVEAGKVEL-DGASYAGLSLPFSITQLIWIEVILVGGAEFYRNSETNPEKRCYPGGVFDPLKLASEDEERAFRLKTAEIKHARL 244          
BLAST of EY692774 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 4.037e-17
Identity = 65/227 (28.63%), Postives = 87/227 (38.33%), Query Frame = 3
Query:  171 IQARFGFGKRKTAPKKSKQSSGSSDRPLWYPGAKA------PEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYPGQPLPFSXXXXXXXXXXXXGYIEFQRTXSL------------------------TRRETLPGGKFFDPLA 761
            + ++ G G   T+ K    ++ ++ +  W P  K       PEWLDGSL GD+GFDP GLGK   +L++                                           +RE ELIHGRWAMLA LG    +  TGI W +AG        + PG   PFS            G++E +R                            T  +  PGGKFFDPL+
Sbjct:   32 VNSKVGAGVSTTSRKLVVVAAAAAPKKSWIPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKW-------------------------------------------YREAELIHGRWAMLAVLGIFVGQAWTGIPWFEAG--------ADPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATPWSRTAENFSNSTGEQGYPGGKFFDPLS 207          
BLAST of EY692774 vs. ExPASy Swiss-Prot
Match: CB4B_SOLLC (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum GN=CAP10B PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.945e-16
Identity = 67/224 (29.91%), Postives = 82/224 (36.61%), Query Frame = 3
Query:  180 RFGFGKRKTAPKKSKQSSGSSDRPLWYPGAKA------PEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYPGQPLPFSXXXXXXXXXXXXGYIEFQR------------------------TXSLTRRETLPGGKFFDPLA 761
            RF       APKKS           W P  K+      PEWLDGSL GD+GFDP GLGK   +L++                                           +RE ELIHGRWAM A LG    +  +GI W +AG        + PG   PFS            G++E +R                          + T  +  PGGKFFDPLA
Sbjct:   41 RFVVAAAAVAPKKS-----------WIPAVKSGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKW-------------------------------------------YREAELIHGRWAMAAVLGIFVGQAWSGIPWFEAG--------ADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFDNDSQSIDWATPWSKTAENFANFTGEQGYPGGKFFDPLA 202          
BLAST of EY692774 vs. ExPASy Swiss-Prot
Match: CB4A_SOLLC (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.446e-15
Identity = 60/199 (30.15%), Postives = 74/199 (37.19%), Query Frame = 3
Query:  255 WYPGAKA------PEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYPGQPLPFSXXXXXXXXXXXXGYIEFQR------------------------TXSLTRRETLPGGKFFDPLA 761
            W P  +       PEWLDGSL GDYGFDP GLGK   +L++                                           +RE ELIHGRWAM A LG    +  +GI W +AG        + PG   PFS            G++E +R                          + T  +  PGGKFFDPLA
Sbjct:   55 WIPAVRGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKW-------------------------------------------YREAELIHGRWAMAAVLGIFVGQAWSGIPWFEAG--------ADPGAIAPFSFGTLLGTQLILMGWVESKRWVDFFDPDSQSVEWATPWSKTAENFANFTGEQGYPGGKFFDPLA 202          
The following BLAST results are available for this feature:
BLAST of EY692774 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
CB4A_ARATH2.399e-8668.51Chlorophyll a-b binding protein CP29.1, chloroplas... [more]
CB4B_ARATH2.482e-8372.64Chlorophyll a-b binding protein CP29.2, chloroplas... [more]
CB4C_ARATH3.250e-7565.73Chlorophyll a-b binding protein CP29.3, chloroplas... [more]
CB29_CHLRE8.360e-3944.70Chlorophyll a-b binding protein CP29 OS=Chlamydomo... [more]
CB4_SPIOL4.037e-1728.63Chlorophyll a-b binding protein CP24, chloroplasti... [more]
CB4B_SOLLC9.945e-1629.91Chlorophyll a-b binding protein CP24 10B, chloropl... [more]
CB4A_SOLLC6.446e-1530.15Chlorophyll a-b binding protein CP24 10A, chloropl... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-700-004-C09-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692774 ID=EY692774; Name=EY692774; organism=Citrus sinensis; type=EST; length=893bp
CCACGCGTCCGCCAGNAGTATCGATCACTTAACAAGTTACAATTTCAATC
AACACTACACACCCCACCGTAAGTTAGCCACAAGCCATGGCCTCAACCAC
AGCAGCAGCAGCCGCCACATCATCTTTCATTGGCACCCGCCTCCCCGACA
TTTACTCAAACTCGGGCCGTATCCAAGCCCGGTTCGGCTTCGGAAAGAGA
AAAACAGCACCCAAAAAGTCGAAACAGTCTTCCGGATCCTCTGATCGTCC
ACTTTGGTACCCAGGAGCCAAGGCACCCGAGTGGCTCGACGGGAGCTTGG
TGGGTGACTACGGGTTCGACCCGTTCGGGCTGGGCAAGCCAGCGGAGTAC
TTGCAGTATGACTATGACTCGTTGGACCAGAACTTGGCTAAGAACCCGGC
TGGCGATATTATTGGGACGAGGATTGAGGCCTCTGACATGCAGTCCACGC
CGCTTCAGCCGTACACTGAAGTCTTTGGTCTGCAGAGGTTCCGTGAGTGT
GAGCTCATTCATGGACGTTGGGCCATGTTGGCTACTCTCGGTGCCCTCAC
TGTTGAGTGGCTCACTGGGATTACTTGGCAAGACGCTGGCAAGGTAGAGT
TAGTTGAAGGATCATCATACCCTGGGCAACCACTTCCATTCTCAATAACA
ACGTTGATATGAATTGAGGTTTTGGTAATTGGCTACATTGAGTTCCAAAG
AACTCANAGCTTGACCCGGAGAGAGACTCTCCCCGGAGGAAAGTTTTTTG
ATCCTCTGGCTTGGCCGCTGACCCGGAAAGAAAGCCACCCTCAATTGCAG
AAATCAGCCCGCCCGCTTGCCAGGTTGCATTCTTGGCTTNCTGGACAGCT
GGTGGAACCGAAAAGCCTTTAAAAATGGGCTACCACTTGAGGA
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