EY692673

Overview
NameEY692673
Unique NameEY692673
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length887
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY692673_ssr170 microsatellite EY692673_ssr170:170..184. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY692673 vs. ExPASy Swiss-Prot
Match: NFYC2_ARATH (Nuclear transcription factor Y subunit C-2 OS=Arabidopsis thaliana GN=NFYC2 PE=1 SV=2)

HSP 1 Score: 139.813 bits (351), Expect = 1.972e-32
Identity = 78/107 (72.90%), Postives = 82/107 (76.64%), Query Frame = 3
Query:  408 MFWSNQMQEIEQTADFKNHSLPLAXIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWFHTERIK-ETLQKM-I*RLPFQD*CF*FLGGYIPXDELKERDLG 722
            MFW+NQMQEIE T DFKNH+LPLA IKKIMKADEDVRMISAEAPVIFAKACEMFILELTLR+W HTE  K  TLQK  I     +   F FL   IP DELKE  LG
Sbjct:   57 MFWANQMQEIEHTTDFKNHTLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRAWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEEGLG 163          
BLAST of EY692673 vs. ExPASy Swiss-Prot
Match: NFYC9_ARATH (Nuclear transcription factor Y subunit C-9 OS=Arabidopsis thaliana GN=NFYC9 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 5.939e-29
Identity = 70/106 (66.04%), Postives = 80/106 (75.47%), Query Frame = 3
Query:  411 FWSNQMQEIEQTADFKNHSLPLAXIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWFHTERIK-ETLQKM-I*RLPFQD*CF*FLGGYIPXDELKERDLG 722
            FW NQ +EIE+T DFKNHSLPLA IKKIMKADEDVRMISAEAPV+FA+ACEMFILELTLRSW HTE  K  TLQK  I     +   F FL   +P ++L++  LG
Sbjct:   62 FWENQFKEIEKTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAVTRTDIFDFLVDIVPREDLRDEVLG 167          
BLAST of EY692673 vs. ExPASy Swiss-Prot
Match: NFYC3_ARATH (Nuclear transcription factor Y subunit C-3 OS=Arabidopsis thaliana GN=NFYC3 PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.947e-28
Identity = 69/106 (65.09%), Postives = 79/106 (74.53%), Query Frame = 3
Query:  411 FWSNQMQEIEQTADFKNHSLPLAXIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWFHTERIK-ETLQKM-I*RLPFQD*CF*FLGGYIPXDELKERDLG 722
            FW  Q +EIE+T DFKNHSLPLA IKKIMKADEDVRMISAEAPV+FA+ACEMFILELTLRSW HTE  K  TLQK  I     +   F FL   +P ++L++  LG
Sbjct:   52 FWETQFKEIEKTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAVTRTDIFDFLVDIVPREDLRDEVLG 157          
BLAST of EY692673 vs. ExPASy Swiss-Prot
Match: NFYC4_ARATH (Nuclear transcription factor Y subunit C-4 OS=Arabidopsis thaliana GN=NFYC4 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.120e-27
Identity = 67/105 (63.81%), Postives = 77/105 (73.33%), Query Frame = 3
Query:  408 MFWSNQMQEIEQTADFKNHSLPLAXIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWFHTERIK-ETLQKM-I*RLPFQD*CF*FLGGYIPXDELKERD 716
            MFW+ Q QEIEQ  DFKNH LPLA IKKIMKADEDVRMISAEAP++FAKACE+FILELT+RSW H E  K  TLQK  I     +   F FL   +P +E+KE +
Sbjct:   59 MFWTYQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREEIKEEE 163          
BLAST of EY692673 vs. ExPASy Swiss-Prot
Match: NFYC1_ARATH (Nuclear transcription factor Y subunit C-1 OS=Arabidopsis thaliana GN=NFYC1 PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.259e-27
Identity = 66/103 (64.08%), Postives = 76/103 (73.79%), Query Frame = 3
Query:  408 MFWSNQMQEIEQTADFKNHSLPLAXIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWFHTERIK-ETLQKM-I*RLPFQD*CF*FLGGYIPXDELKE 710
            +FW+ Q QEIEQ  DFKNH LPLA IKKIMKADEDVRMISAEAP++FAKACE+FILELT+RSW H E  K  TLQK  I     +   F FL   +P DE+K+
Sbjct:   46 LFWTYQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKD 148          
BLAST of EY692673 vs. ExPASy Swiss-Prot
Match: NFYC_DICDI (Nuclear transcription factor Y subunit gamma OS=Dictyostelium discoideum GN=nfyc-1 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.281e-23
Identity = 70/166 (42.17%), Postives = 93/166 (56.02%), Query Frame = 3
Query:  237 YPPYHTAPLVASGTPAVAVPSPTQP------PSTFASSPXXXXXXXXXXXXXXXXXXXXXXXXM-FWSNQMQEIEQTADFKNHSLPLAXIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWFHTERIK-ETLQKM-I*RLPFQD*CF*FLGGYIPXDELK 707
            YP  + +    +GTPA++ PS T P      P+T  S+P                          FWS+Q+++I +T DFK H LPLA IKKIMK+D+DV  IS+EAP++FAKACE+ ILE+T RSW HTE  K  TLQ+  I     +   F FL   +P DE+K
Sbjct:  187 YPSLNDSSSNGNGTPALSSPSSTTPHPTTPHPTTPTSTPNQRFQSNGSSSFQNQLQNHLENKLSSFWSSQLRDIHKTEDFKTHELPLARIKKIMKSDKDVNKISSEAPILFAKACEILILEMTHRSWVHTEMNKRRTLQRTDIINSLSRCETFDFLIDMLPRDEIK 352          
BLAST of EY692673 vs. ExPASy Swiss-Prot
Match: NFYC6_ARATH (Nuclear transcription factor Y subunit C-6 OS=Arabidopsis thaliana GN=NFYC6 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.572e-19
Identity = 48/75 (64.00%), Postives = 57/75 (76.00%), Query Frame = 3
Query:  411 FWSNQMQEIEQTADFKNHSLPLAXIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWFHTERIK-ETLQK 632
            +W  QM+ +   +DFKN  LPLA IKKIMKAD DV M+SAEAP+IFAKACEMFI++LT+RSW   E  K  TLQK
Sbjct:   39 YWIEQMETV---SDFKNRQLPLARIKKIMKADPDVHMVSAEAPIIFAKACEMFIVDLTMRSWLKAEENKRHTLQK 110          
BLAST of EY692673 vs. ExPASy Swiss-Prot
Match: HAP5_YEAST (Transcriptional activator HAP5 OS=Saccharomyces cerevisiae GN=HAP5 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.815e-19
Identity = 49/83 (59.04%), Postives = 59/83 (71.08%), Query Frame = 3
Query:  411 FWSNQMQEIEQTA--------DFKNHSLPLAXIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWFHTERIK-ETLQK 632
            +W   + EIE T         DFK+HSLP A I+K+MK DEDV+MISAEAP+IFAKACE+FI ELT+R+W   ER K  TLQK
Sbjct:  133 YWQELINEIESTNEPGSEHQDDFKSHSLPFARIRKVMKTDEDVKMISAEAPIIFAKACEIFITELTMRAWCVAERNKRRTLQK 215          

HSP 2 Score: 21.557 bits (44), Expect = 5.815e-19
Identity = 6/11 (54.55%), Postives = 11/11 (100.00%), Query Frame = 1
Query:  655 RTDVFDFLVDI 687
            ++D+FDFL+D+
Sbjct:  224 KSDMFDFLIDV 234          
BLAST of EY692673 vs. ExPASy Swiss-Prot
Match: NFYC_RAT (Nuclear transcription factor Y subunit gamma OS=Rattus norvegicus GN=Nfyc PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.717e-18
Identity = 57/103 (55.34%), Postives = 67/103 (65.05%), Query Frame = 3
Query:  411 FWSNQMQEIEQTA--DFKNHSLPLAXIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWFHTERIK-ETLQKM-I*RLPFQD*CF*FLGGYIPXDELK 707
            FW   M+EI      DF+   LPLA IKKIMK DEDV+MISAEAPV+FAKA ++FI ELTLR+W HTE  K  TLQ+  I     +   F FL   +P DELK
Sbjct:   22 FWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPRDELK 124          
BLAST of EY692673 vs. ExPASy Swiss-Prot
Match: NFYC_PONAB (Nuclear transcription factor Y subunit gamma OS=Pongo abelii GN=NFYC PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.717e-18
Identity = 57/103 (55.34%), Postives = 67/103 (65.05%), Query Frame = 3
Query:  411 FWSNQMQEIEQTA--DFKNHSLPLAXIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWFHTERIK-ETLQKM-I*RLPFQD*CF*FLGGYIPXDELK 707
            FW   M+EI      DF+   LPLA IKKIMK DEDV+MISAEAPV+FAKA ++FI ELTLR+W HTE  K  TLQ+  I     +   F FL   +P DELK
Sbjct:   22 FWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPRDELK 124          
The following BLAST results are available for this feature:
BLAST of EY692673 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
NFYC2_ARATH1.972e-3272.90Nuclear transcription factor Y subunit C-2 OS=Arab... [more]
NFYC9_ARATH5.939e-2966.04Nuclear transcription factor Y subunit C-9 OS=Arab... [more]
NFYC3_ARATH2.947e-2865.09Nuclear transcription factor Y subunit C-3 OS=Arab... [more]
NFYC4_ARATH1.120e-2763.81Nuclear transcription factor Y subunit C-4 OS=Arab... [more]
NFYC1_ARATH3.259e-2764.08Nuclear transcription factor Y subunit C-1 OS=Arab... [more]
NFYC_DICDI1.281e-2342.17Nuclear transcription factor Y subunit gamma OS=Di... [more]
NFYC6_ARATH5.572e-1964.00Nuclear transcription factor Y subunit C-6 OS=Arab... [more]
HAP5_YEAST5.815e-1959.04Transcriptional activator HAP5 OS=Saccharomyces ce... [more]
NFYC_RAT4.717e-1855.34Nuclear transcription factor Y subunit gamma OS=Ra... [more]
NFYC_PONAB4.717e-1855.34Nuclear transcription factor Y subunit gamma OS=Po... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-700-003-C01-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692673 ID=EY692673; Name=EY692673; organism=Citrus sinensis; type=EST; length=887bp
CCACGCGTCCGAGTTTAACCTTCACTCTACTTTCTCTCTCTTAGGGTTTC
TGCTAACTCAATAAGCTCTTCTTGAAGATTCAGCTCGAGCAATCAGTGGT
ATTGTGATGAGAATATAGCTTGAAGAGGAAAAGTTTTAAAAAATTGGGCA
TGGATCAATCAGATCAAACACAACAACAACAACAGCAACAGCAGCAGCCT
GTGATGGGGGTTGTAGCTGGTGCTGGTCAGATGTCATATCCTCCCTACCA
TACGGCTCCTTTGGTGGCTTCTGGTACTCCTGCTGTGGCCGTCCCCTCCC
CAACCCAGCCTCCATCTACTTTCGCCAGTTCTCCGCACCAGCTTGCCTAC
CAACAAGCCCAGCACTTTCACCACCAACAGCAGCAGCAACAACAGCAGCA
GCTTCAGATGTTCTGGTCCAATCAAATGCAAGAAATTGAGCAAACGGCCG
ACTTCAAGAATCACAGCCTCCCACTTGCTANGATCAAGAAAATTATGAAA
GCTGATGAAGATGTGAGAATGATTTCAGCAGAGGCCCCTGTCATATTTGC
CAAGGCTTGTGAGATGTTTATTTTGGAACTAACTCTGCGGTCTTGGTTCC
ACACAGAGAGAATAAAGGAGACACTGCAAAAGATGATATAGCGGCTGCCA
TTTCAGGACTGATGTTTTTGATTTCTTGGTGGATATATTCCTANAGATGA
GTTGAAAGAGAGGGACTTGGGGTCACCAAGGCGCTCTTCCAGTGTANGGT
CACCCTGTGAATTGCCTTATACTTGTCCCGCCACACACCGGTGGGCATAC
AGGGTGATATGGGAAAGCATTCATCAGCAGCACTTTATCTGGCACAACTC
GACTCTGTGCTTTATGCATGGCTCAAGTAAATCAGAC
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