EY692662

Overview
NameEY692662
Unique NameEY692662
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length838
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY692662 vs. ExPASy Swiss-Prot
Match: TT12_ARATH (Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.418e-15
Identity = 41/119 (34.45%), Postives = 70/119 (58.82%), Query Frame = 3 
Query:  279 KSVFWTETVKMWKIATPIVFNILCNYGTNSFTNIFVGHIGEIELSSVTISLSVIGTFSFGFMLGMGSALETLCGQAFGAGQVHMLGVYMQRSWLILSVTCVCLLPIYCFASPILKLLGQ 635
            K   W E+  +W ++   +   + NY  +  T +F GH+G ++L+  +I+   I   ++G MLGM SA++T+CGQA+GA Q   +G+  QR+ ++     V L  +Y ++ PILK +GQ
Sbjct:   46 KLAVW-ESKLLWTLSGASIVVSVLNYMLSFVTVMFTGHLGSLQLAGASIATVGIQGLAYGIMLGMASAVQTVCGQAYGARQYSSMGIICQRAMVLHLAAAVFLTFLYWYSGPILKTMGQ 163
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BLAST of EY692662 vs. ExPASy Swiss-Prot
Match: S47A1_DANRE (Multidrug and toxin extrusion protein 1 OS=Danio rerio GN=slc47a1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.711e-11
Identity = 36/114 (31.58%), Postives = 61/114 (53.51%), Query Frame = 3 
Query:  294 TETVKMWKIATPIVFNILCNYGTNSFTNIFVGHIGEIELSSVTISLSVIGTFSFGFMLGMGSALETLCGQAFGAGQVHMLGVYMQRSWLILSVTCVCLLPIYCFASPILKLLGQ 635
            TE V++ K+A P+  + L  +  +  + +F GH+G+ EL+ V ++++VI         G+ SA +TL  Q FG+  +  +GV +QR  LIL + C     +     PIL  + Q
Sbjct:   51 TEIVELLKLAGPVFISQLMIFLISFVSTVFCGHLGKTELAGVALAIAVINVTGISIGSGLASACDTLISQTFGSNNLKRVGVILQRGILILLLACFPCWALLINTEPILLAVRQ 164
The following BLAST results are available for this feature:
BLAST of EY692662 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
TT12_ARATH3.418e-1534.45Protein TRANSPARENT TESTA 12 OS=Arabidopsis thalia... [more]
S47A1_DANRE8.711e-1131.58Multidrug and toxin extrusion protein 1 OS=Danio r... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-700-003-B02-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692662 ID=EY692662; Name=EY692662; organism=Citrus sinensis; type=EST; length=838bp
CCACGCGTCCGAGCGAAACCAACTGCATTCATACGTAGAGAAAAAGAAGA
GTGCAAAACAAAACTAAACAAACAACCCCCTCAGCCGAAGACCAAGTCAT
CAGGGCAAAAATATATCTTATCTGCTGTATATCGGTGTAAATCAACAGCA
CATCAGTACCCTACACGTGTAACATCATCGCCGGAAGAAGAATGGAGGAG
CCACTGCTGAACGGCGGTGCAGTCATTGGATGTCCTACTGCTGCTGACTA
TGAGCCTGTGAAGAACTTCAAGGAAGCCAAATCAGTGTTTTGGACTGAGA
CAGTGAAGATGTGGAAGATTGCTACCCCTATTGTGTTTAACATTTTGTGT
AATTATGGCACCAATTCTTTCACTAATATTTTTGTTGGCCATATTGGTGA
AATTGAGCTCTCTTCTGTTACCATTTCTCTTTCTGTTATTGGCACCTTCT
CTTTTGGGTTCATGCTTGGAATGGGGAGTGCTTTGGAAACACTCTGTGGT
CAAGCTTTTGGAGCAGGGCAAGTTCATATGCTTGGTGTATACATGCAACG
ATCCTGGTTGATTTTGTCGGTAACGTGTGTCTGTCTCTTGCCCATTTACT
GCTTTGCATCTCCAATCCTAAAGCTTCTCGGGCAAGAAGACAGATAGCCG
ATCTTGCTGGACAATCACAATCCTAACAATCCCCCATTATNNTCTCTTNG
CATCAATTTNCTACTCAAAAGTTCCTTCAGCTCAAGCAAAGTCAGNCATT
TGCTTGGATTGGATTGTGGGCTCTNTANTCACATTGNAATGCTTATGTCT
CATTTATGTGTTCATGGGCATGACTGTGCAACTATGCA
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