EY692657

Overview
NameEY692657
Unique NameEY692657
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length925
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY692657 vs. ExPASy Swiss-Prot
Match: SEC13_RAT (Protein SEC13 homolog OS=Rattus norvegicus GN=Sec13 PE=1 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 3.466e-56
Identity = 101/189 (53.44%), Postives = 130/189 (68.78%), Query Frame = 2
Query:  203 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPGMAPGALVGL---GLLDPXQKMASCGCDILXRVWR 760
            ++T HED +HD  MD+YG RLAT SSD S+KI  + N     +A L+GH GPVWQVAWAHP +G+ILASCSYD +VIIWKE N   W + H  + H SSVNS+ WAPH+ GL LACGSSDG IS+ T T +G W+  +I+ AH +G  +VSWAP + PG+L+        +  +K AS GCD L ++WR
Sbjct:    8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWKEEN-GTWEKTHEHSGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDQPSGQKPNYIKKFASGGCDNLIKLWR 195          

HSP 2 Score: 23.0978 bits (48), Expect = 3.466e-56
Identity = 8/13 (61.54%), Postives = 9/13 (69.23%), Query Frame = 3
Query:  807 HX*WVXSVAWAPN 845
            H  WV  VAWAP+
Sbjct:  211 HSDWVRDVAWAPS 223          
BLAST of EY692657 vs. ExPASy Swiss-Prot
Match: SEC13_MOUSE (Protein SEC13 homolog OS=Mus musculus GN=Sec13 PE=2 SV=3)

HSP 1 Score: 217.624 bits (553), Expect = 3.466e-56
Identity = 101/189 (53.44%), Postives = 130/189 (68.78%), Query Frame = 2
Query:  203 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPGMAPGALVGL---GLLDPXQKMASCGCDILXRVWR 760
            ++T HED +HD  MD+YG RLAT SSD S+KI  + N     +A L+GH GPVWQVAWAHP +G+ILASCSYD +VIIWKE N   W + H  + H SSVNS+ WAPH+ GL LACGSSDG IS+ T T +G W+  +I+ AH +G  +VSWAP + PG+L+        +  +K AS GCD L ++WR
Sbjct:    8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWKEEN-GTWEKTHEHSGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDQPSGQKPNYIKKFASGGCDNLIKLWR 195          

HSP 2 Score: 23.0978 bits (48), Expect = 3.466e-56
Identity = 8/13 (61.54%), Postives = 9/13 (69.23%), Query Frame = 3
Query:  807 HX*WVXSVAWAPN 845
            H  WV  VAWAP+
Sbjct:  211 HSDWVRDVAWAPS 223          
BLAST of EY692657 vs. ExPASy Swiss-Prot
Match: SEC13_BOVIN (Protein SEC13 homolog OS=Bos taurus GN=SEC13 PE=2 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 6.408e-55
Identity = 100/189 (52.91%), Postives = 128/189 (67.72%), Query Frame = 2
Query:  203 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPGMAPGALVGL---GLLDPXQKMASCGCDILXRVWR 760
            ++T HED +HD  MD+YG RLAT SSD S+KI  + N     +A L+GH GPVWQVAWAHP +G+ILASCSYD +VIIWKE N   W + H    H SSVNS+ WAPH+ GL LACGSSDG IS+ T T  G W+  +I+ AH +G  +VSWAP + PG+L+        +  +K AS GCD L ++W+
Sbjct:    8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILVADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWKEEN-GTWEKTHEHTGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGLGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDQPSGQKPNYIKKFASGGCDNLIKLWK 195          

HSP 2 Score: 23.0978 bits (48), Expect = 6.408e-55
Identity = 8/13 (61.54%), Postives = 9/13 (69.23%), Query Frame = 3
Query:  807 HX*WVXSVAWAPN 845
            H  WV  VAWAP+
Sbjct:  211 HSDWVRDVAWAPS 223          
BLAST of EY692657 vs. ExPASy Swiss-Prot
Match: SEC13_HUMAN (Protein SEC13 homolog OS=Homo sapiens GN=SEC13 PE=1 SV=3)

HSP 1 Score: 213.001 bits (541), Expect = 8.354e-55
Identity = 98/189 (51.85%), Postives = 130/189 (68.78%), Query Frame = 2
Query:  203 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPGMAPGALV---GLGLLDPXQKMASCGCDILXRVWR 760
            ++T HED +HD  MD+YG RLAT SSD S+KI  + N     +A L+GH GPVWQVAWAHP +G+ILASCSYD +VIIW+E N   W ++H    H SSVNS+ WAPH+ GL LACGSSDG IS+ T T +G W+  +I+ AH +G  +VSWAP + PG+L+        +  ++ AS GCD L ++W+
Sbjct:    8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREEN-GTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWK 195          

HSP 2 Score: 23.0978 bits (48), Expect = 8.354e-55
Identity = 8/13 (61.54%), Postives = 9/13 (69.23%), Query Frame = 3
Query:  807 HX*WVXSVAWAPN 845
            H  WV  VAWAP+
Sbjct:  211 HSDWVRDVAWAPS 223          
BLAST of EY692657 vs. ExPASy Swiss-Prot
Match: SEC13_DICDI (Protein transport protein SEC13 OS=Dictyostelium discoideum GN=sec13 PE=3 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.825e-51
Identity = 94/194 (48.45%), Postives = 125/194 (64.43%), Query Frame = 2
Query:  188 MPAQKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPGMAPGALVGLG---LLDPXQKMASCGCDILXRVWR 760
            M  Q +++GHED VHD   D+YGK LAT SSD  IKI  +     QHL  L+GH GPVWQVAWAHPKFG ILAS SYD +VI+WKE   N W+  H +  H+ SVNSI+WAPHE GLSLAC SSDG++++     +  W+  +  Q   +GV SVSW+P   P +LV      +  P +++ +  CD L ++++
Sbjct:    1 MATQNVDSGHEDMVHDAQFDYYGKFLATCSSDKMIKIFDVGGENPQHLVDLRGHEGPVWQVAWAHPKFGKILASASYDRKVIVWKEVGNNSWSIIHQYAGHELSVNSISWAPHEFGLSLACASSDGSVTIHNYN-NNVWEAPQKIQVSQIGVNSVSWSPAAIPTSLVNSANTIIPAPIKRIVTGSCDNLIKIFK 193          

HSP 2 Score: 25.0238 bits (53), Expect = 1.825e-51
Identity = 9/13 (69.23%), Postives = 9/13 (69.23%), Query Frame = 3
Query:  807 HX*WVXSVAWAPN 845
            H  WV  VAWAPN
Sbjct:  208 HKDWVRDVAWAPN 220          
BLAST of EY692657 vs. ExPASy Swiss-Prot
Match: SEC13_SCHPO (Protein transport protein sec13 OS=Schizosaccharomyces pombe GN=sec13 PE=1 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 5.269e-51
Identity = 92/194 (47.42%), Postives = 124/194 (63.92%), Query Frame = 2
Query:  203 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPGMAPGALVGLGLLDPXQKMASCGCDILXRVWRCIMGFGRW 784
            ++T H+D +HD  +D+YGKRLAT SSD +IK+  + N+    L TL+GH GPVWQ+ WAHPKFG+ILAS SYDG VI+W+E     W++      H++SVN+++WAPHE G  LAC SSDG +SV     DG  D TRI  AH  G  +V W+P    G++VG       +K+A+ GCD L ++W    G   W
Sbjct:    4 VDTQHDDMIHDAILDYYGKRLATCSSDQTIKVFSIENNQQTLLETLRGHSGPVWQLGWAHPKFGTILASASYDGHVIVWRE-TGGVWSELMDHTAHQASVNAVSWAPHEYGALLACASSDGKVSVLEFKDDGSCD-TRIFTAHEPGCNAVCWSPPSLSGSVVGQSPAAGPKKLATAGCDNLVKIWAFDAGVNNW 195          

HSP 2 Score: 24.6386 bits (52), Expect = 5.269e-51
Identity = 11/26 (42.31%), Postives = 14/26 (53.85%), Query Frame = 3
Query:  768 WDLEDGMLPCPSXHX*WVXSVAWAPN 845
            W LED +    + H  W   VAWAP+
Sbjct:  195 WILEDTL----AGHVDWTRDVAWAPS 216          
BLAST of EY692657 vs. ExPASy Swiss-Prot
Match: SEC13_USTMA (Protein transport protein SEC13 OS=Ustilago maydis GN=SEC13 PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 2.911e-50
Identity = 105/223 (47.09%), Postives = 130/223 (58.30%), Query Frame = 2
Query:  197 QKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLA-TLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKE-------------GNQN----------DWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPGMAPGALVGL------------GLLDPXQKMASCGCDILXRVW 757
            + IET HED VHD  +DFYGKRLAT SSD ++K+  + N      A TL GH+GPVWQVAWAHP FG ILASCSYDG+V+IWK+             G+Q+           WT+      H +SVNSI+WAPHELG  LAC SSDGN+SV T   DG W    +  AHPVG  +VSWAP + PG+L+              G     ++ AS GCD   ++W
Sbjct:   19 KNIETQHEDMVHDAQLDFYGKRLATCSSDRTVKVFDIVNGTPSTTAETLHGHQGPVWQVAWAHPTFGDILASCSYDGKVVIWKDNGAGASIGASAPYGSQSAYGAPTSSAGGWTKIKEHTLHTASVNSISWAPHELGSILACASSDGNVSVLTFNNDGTWAVDLV-AAHPVGCNAVSWAPAVVPGSLISAQSVGANAGAASNGEAKLVKRFASAGCDNTVKIW 240          
BLAST of EY692657 vs. ExPASy Swiss-Prot
Match: SEC13_EMENI (Protein transport protein sec13 OS=Emericella nidulans GN=sec13 PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 3.305e-47
Identity = 94/195 (48.21%), Postives = 127/195 (65.13%), Query Frame = 2
Query:  209 TGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQND--------WTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPGMAPGALV----GLGLLDPXQKMASCGCDILXRVW 757
            +GH+D +HD  +D+YG+RLAT SSD +IKI  +     + + TLKGH GPVW V WAHPKFG+ILAS SYDG+V+IW+E +Q+         WT+   F+ H +SVN I+WAPHE G  LAC SSDG++SV     D  W T +I  AH +GV S+SWAP  +PG+LV    G+G     ++  + G D L ++W
Sbjct:   10 SGHDDMIHDAGLDYYGRRLATCSSDKTIKIFEIEGDTHKLVETLKGHEGPVWCVEWAHPKFGTILASSSYDGKVLIWREQHQSSTAPIGSGAWTKVFDFSLHTASVNMISWAPHETGCLLACASSDGHVSVL-EFRDNSW-THQIFHAHGMGVNSISWAPAASPGSLVSSNPGIG---QQRRFVTGGSDNLLKIW 199          

HSP 2 Score: 22.7126 bits (47), Expect = 3.305e-47
Identity = 9/21 (42.86%), Postives = 13/21 (61.90%), Query Frame = 3
Query:  807 HX*WVXSVAWAPNWVXQITIA 869
            H  WV  VAW+P+ + +  IA
Sbjct:  217 HSDWVRDVAWSPSILSKSYIA 237          
BLAST of EY692657 vs. ExPASy Swiss-Prot
Match: SEC13_ASPTN (Protein transport protein sec13 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=sec13 PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 3.305e-47
Identity = 94/193 (48.70%), Postives = 125/193 (64.77%), Query Frame = 2
Query:  209 TGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQND--------WTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPGMAPGALVGLGLLDPXQ--KMASCGCDILXRVW 757
            +GHED +HD  +D+YG+RLAT SSD +IK+  +   A + + TLKGH G VW VAWAHPKFG+ILAS SYDG+V+IW+E +QN         WT+   F+ H +SVN ++WAPHE G  L C SSDG++SV     D  W T +I  AH +GV S+SWAP  APG+L+      P Q  +  + G D L ++W
Sbjct:   10 SGHEDMIHDAGLDYYGRRLATCSSDKTIKVFEIEGEAHRLVETLKGHEGAVWCVAWAHPKFGTILASSSYDGKVLIWREQHQNTTSPAAGSAWTKVFDFSLHTASVNMVSWAPHESGCLLGCASSDGHVSVL-EFQDNSW-THQIFHAHGMGVNSISWAPAAAPGSLISAN-PGPGQQRRFVTGGSDNLLKIW 199          

HSP 2 Score: 22.7126 bits (47), Expect = 3.305e-47
Identity = 9/21 (42.86%), Postives = 13/21 (61.90%), Query Frame = 3
Query:  807 HX*WVXSVAWAPNWVXQITIA 869
            H  WV  VAW+P+ + +  IA
Sbjct:  217 HSDWVRDVAWSPSILSKSYIA 237          
BLAST of EY692657 vs. ExPASy Swiss-Prot
Match: SEC13_ASPNC (Protein transport protein sec13 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=sec13 PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 9.538e-47
Identity = 97/201 (48.26%), Postives = 129/201 (64.18%), Query Frame = 2
Query:  188 MPAQKIE-TGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQN--------DWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPGMAPGALVGLGLLDPXQ--KMASCGCDILXRVW 757
            M AQ I  +GH++ +HD  +D+YG+RLAT SSD +IKI  +     + + TLKGH G VW VAWAHPKFG+ILAS SYDG+V+IW+E +QN         WT+   F+ H +SVN ++WAPHE G  LAC SSDG++SV     D  W T +I  AH +GV S+SWAP  APG+L+      P Q  +  + G D L ++W
Sbjct:    1 MAAQVISNSGHDEMIHDAGLDYYGRRLATCSSDKTIKIFEIEGETHRLIETLKGHEGAVWCVAWAHPKFGTILASSSYDGKVLIWREQHQNATSPVAGGAWTKVFDFSLHTASVNMVSWAPHESGCLLACASSDGHVSVL-EFRDNSW-THQIFHAHGMGVNSISWAPAAAPGSLISSN-PGPGQQRRFVTGGSDNLLKIW 198          

HSP 2 Score: 22.7126 bits (47), Expect = 9.538e-47
Identity = 9/21 (42.86%), Postives = 13/21 (61.90%), Query Frame = 3
Query:  807 HX*WVXSVAWAPNWVXQITIA 869
            H  WV  VAW+P+ + +  IA
Sbjct:  216 HSDWVRDVAWSPSVLSKSYIA 236          
The following BLAST results are available for this feature:
BLAST of EY692657 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
SEC13_RAT3.466e-5653.44Protein SEC13 homolog OS=Rattus norvegicus GN=Sec1... [more]
SEC13_MOUSE3.466e-5653.44Protein SEC13 homolog OS=Mus musculus GN=Sec13 PE=... [more]
SEC13_BOVIN6.408e-5552.91Protein SEC13 homolog OS=Bos taurus GN=SEC13 PE=2 ... [more]
SEC13_HUMAN8.354e-5551.85Protein SEC13 homolog OS=Homo sapiens GN=SEC13 PE=... [more]
SEC13_DICDI1.825e-5148.45Protein transport protein SEC13 OS=Dictyostelium d... [more]
SEC13_SCHPO5.269e-5147.42Protein transport protein sec13 OS=Schizosaccharom... [more]
SEC13_USTMA2.911e-5047.09Protein transport protein SEC13 OS=Ustilago maydis... [more]
SEC13_EMENI3.305e-4748.21Protein transport protein sec13 OS=Emericella nidu... [more]
SEC13_ASPTN3.305e-4748.70Protein transport protein sec13 OS=Aspergillus ter... [more]
SEC13_ASPNC9.538e-4748.26Protein transport protein sec13 OS=Aspergillus nig... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-700-003-A09-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692657 ID=EY692657; Name=EY692657; organism=Citrus sinensis; type=EST; length=925bp
CCACGCGTCCGCCACCACGCAAAAAGCCTAAAAACGTTTATTACTCTCAG
CCGGTGCTACTGGTCGGTCTTCGAATCCGCTCCTCTCTTAAGAAATTTGG
AGCTGAGAACATAAGATAAAAAGGAGCTACGAACTAGTGATCAAGGAGTT
GAAGTTTGAGGGGTAAAATAAAGAAATATAAAGTAAGATGCCTGCACAAA
AAATTGAAACTGGTCATGAAGACACTGTCCATGATGTAGCCATGGATTTC
TATGGAAAACGTTTAGCCACAGCTTCGTCTGACTCCAGCATTAAGATAAT
TGGTTTAAGCAACTCTGCTTCCCAGCACCTTGCTACATTGAAAGGCCATA
GAGGTCCTGTTTGGCAAGTTGCATGGGCACACCCCAAGTTTGGGTCAATC
CTTGCTTCCTGTTCCTATGATGGCCAAGTTATTATCTGGAAGGAAGGTAA
TCAAAATGATTGGACACAGGCTCATACTTTTAATGATCATAAATCATCTG
TCAACTCCATTGCGTGGGCACCTCATGAACTTGGTCTCTCCTTGGCTTGT
GGATCTTCTGATGGGAACATCTCAGTCTTTACTGCTACAGCTGATGGTGG
CTGGGATACTACCAGGATAGACCAGGCCCATCCAGTCGGAGTAACATCTG
TTTCATGGGCCCCGGGCATGGCTCCTGGTGCTTTAGTTGGATTGGGCTTA
CTGGATCCTNGTCAGAAAATGGCTTCTTGTGGTTGTGATATACTGNTAAG
GGTGTGGAGATGTATAATGGGATTTGGAAGATGGGATGCTTCCCTGCCCT
TCANANCACANNTGATGGGTGCNGAGCGTGGCATGGGCACCAAACTGGGT
CTTNCAAATCACAATTGCAGTGCATCACAGATGGGACGTTGTATTTGACC
TGTGCCAGGAAGGGAGCATGGAGGT
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