EY692630

Overview
NameEY692630
Unique NameEY692630
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length895
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY692630 vs. ExPASy Swiss-Prot
Match: YDC1_SCHPO (Uncharacterized RNA-binding protein C25G10.01 OS=Schizosaccharomyces pombe GN=SPAC25G10.01 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.963e-15
Identity = 40/95 (42.11%), Postives = 60/95 (63.16%), Query Frame = 1
Query:  193 NPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKAKRSRGRTPTPGHYHG 477
            N GN+L+V+G+++R+   +L++ F   G VT   ++ +P T+ S GF F++  TVE A   I  LN     GR++ V+KAKRSR  +PTPG Y G
Sbjct:   98 NLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNLNSQEFYGRVLNVQKAKRSRPHSPTPGKYMG 192          
BLAST of EY692630 vs. ExPASy Swiss-Prot
Match: SAFB2_MOUSE (Scaffold attachment factor B2 OS=Mus musculus GN=Safb2 PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 1.144e-11
Identity = 36/83 (43.37%), Postives = 54/83 (65.06%), Query Frame = 1
Query:  187 AANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKAK 435
            + + G NL+V+GLS+    ADL+  F   GKV    +VT+ R+  +  + FVTM T + A +CI +L+R+ L GR+I+VEKAK
Sbjct:  446 SCSSGRNLWVSGLSSSTRAADLKSLFSKHGKVIGAKVVTNARSPGARCYGFVTMSTSDEATKCISHLHRTELHGRMISVEKAK 528          
BLAST of EY692630 vs. ExPASy Swiss-Prot
Match: SAFB1_RAT (Scaffold attachment factor B1 OS=Rattus norvegicus GN=Safb PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 4.348e-11
Identity = 36/99 (36.36%), Postives = 56/99 (56.57%), Query Frame = 1
Query:  199 GNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKAKRSRGRTPTPGHYHGLREKQR 495
            G N +V+GLS+     DL+  F   GKV    +VT+ R+  +  + FVTM T E A +CI +L+++ L G++I+VEKAK        P    G  +K++
Sbjct:  427 GRNFWVSGLSSTTRATDLKNLFSRYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCINHLHKTELHGKMISVEKAKSEPAGKRVPDRRDGDSKKEK 525          
BLAST of EY692630 vs. ExPASy Swiss-Prot
Match: SAFB2_HUMAN (Scaffold attachment factor B2 OS=Homo sapiens GN=SAFB2 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.678e-11
Identity = 35/79 (44.30%), Postives = 51/79 (64.56%), Query Frame = 1
Query:  199 GNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKAK 435
            G NL+V+GLS+     DL+  F   GKV    +VT+ R+  +  + FVTM T + A +CI +L+R+ L GR+I+VEKAK
Sbjct:  406 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSDEATKCISHLHRTELHGRMISVEKAK 484          
The following BLAST results are available for this feature:
BLAST of EY692630 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
YDC1_SCHPO4.963e-1542.11Uncharacterized RNA-binding protein C25G10.01 OS=S... [more]
SAFB2_MOUSE1.144e-1143.37Scaffold attachment factor B2 OS=Mus musculus GN=S... [more]
SAFB1_RAT4.348e-1136.36Scaffold attachment factor B1 OS=Rattus norvegicus... [more]
SAFB2_HUMAN5.678e-1144.30Scaffold attachment factor B2 OS=Homo sapiens GN=S... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-700-002-G01-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692630 ID=EY692630; Name=EY692630; organism=Citrus sinensis; type=EST; length=895bp
CCACGCGTCCGCGAATAATCAGTCTAGGCAGCACCGCGAAACCGTGTTAG
GTCATCCGTGTGACTCCAGCTATTTCACTACCAAAGATAGATGTCATCAT
ATTCAAGGGAAGGAAGAGGCCAGAGGTCAAGATCATTATCAAGGTCCAGG
CGCAGTCGATCGAGGTCTAGGAGCCGGTCTCCTGATGCTGCGAATCCAGG
AAATAACTTGTATGTAACAGGCTTATCCACAAGGGTGACAAATGCTGATC
TTGAGAAGTTTTTTGGTGGTGAAGGGAAGGTCACTGAATGCCACTTGGTC
ACAGATCCTCGCACCAGAGAATCCTGTGGTTTTGCATTTGTTACTATGGA
AACTGTTGAGGGTGCTGACCGCTGTATCAAGTACTTAAACCGTTCAGTGC
TTGAAGGTCGACTAATCACCGTGGAAAAGGCAAAGAGGAGTCGTGGCAGA
ACACCAACTCCTGGCCATTATCATGGCTTGAGAGAGAAGCAGCGAGGACT
AGCATAGTGGAATGCCATCTGGTGCATTGAACATCACATCTTCATCCTAG
GTCCCCTGCCTTAGGCCTTGCATTTGTGTGGACCTACAATAGTCTTCACA
GACCCATAATCGTCCATGGCACGTGCTACCTGAGAGCCCTTTGCTTTTCT
CTTATGTAGCATTCTGGCATAAAATAAAGTGAAATGGTCGTAGACGTTCT
CGTANCTATTCCCCCTACAGATATACAGAGATTCTTATTCAGGGACGGNC
GAGGGAGATCACGTTCCCATATGGTAGAGGGAGATCACGATCCCATATGG
GTAGGAGGGCCCTGACTTATTTAGAAACACAGGGACCGTCCTTTTCTGCT
GGGACATTGGTTACGGAGGAAAGCAATCAGTTCATTACANTCTGA
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