EY692613

Overview
NameEY692613
Unique NameEY692613
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length908
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY692613 vs. ExPASy Swiss-Prot
Match: C3H19_ARATH (Zinc finger CCCH domain-containing protein 19 OS=Arabidopsis thaliana GN=At2g16470 PE=1 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 2.116e-37
Identity = 90/227 (39.65%), Postives = 116/227 (51.10%), Query Frame = 2 
Query:   35 VTQSAPKINESEKIWHYQDPSGKVQGPFSMVQLRKWNNTGYFPANLRIWRSNEKQDDSILLTDALAGKFHKDPRLVDISL--SQTIPYSGKSHGASSQPGMETPVGGSSNFDQNRTAWNQHXXXXXXXXXXXXXXLELPKQYRDGWASETNLPSPTPTQSTAGEIKGKTFEKEWSPTPNNQPGSLMVTNLFPGNVXKQSPPATGLETGQSPNFSTSSSASKLSVNVD 709
            V+Q  PK N+SEKIWHY+DPSGKVQGPFSM QLRKWNNTGYFPA L IW++NE   DS+LLTDALAG F K  + VD S   +Q   +SG+S  +    G    +  ++                          +E+P+  +D W+   +LPSPTP Q T    K + FE  WSPT                   K SP +      QS N+S + S    +  +D
Sbjct:  182 VSQPVPKSNDSEKIWHYKDPSGKVQGPFSMAQLRKWNNTGYFPAKLEIWKANESPLDSVLLTDALAGLFQKQTQAVDNSYMKAQVAAFSGQSSQSEPNLGFAARIAPTT--------------------------IEIPRNSQDTWSQGGSLPSPTPNQITTPTAKRRNFESRWSPT-------------------KPSPQS----ANQSMNYSVAQSGQSQTSRID 359
[Close]
BLAST of EY692613 vs. ExPASy Swiss-Prot
Match: C3H44_ARATH (Zinc finger CCCH domain-containing protein 44 OS=Arabidopsis thaliana GN=At3g51120 PE=2 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 1.628e-21
Identity = 44/69 (63.77%), Postives = 57/69 (82.61%), Query Frame = 2 
Query:   41 QSAPKINESEKIWHYQDPSGKVQGPFSMVQLRKWNNTGYFPANLRIWRSNEKQDDSILLTDALAGKFHK 247
            Q   K +E  +IWHY+DP+GK QGPFSMVQLR+W ++G+FP  LRIWR++E QD+S+LLTDALAG+F K
Sbjct:  645 QETGKDDEESEIWHYRDPTGKTQGPFSMVQLRRWKSSGHFPPYLRIWRAHENQDESVLLTDALAGRFDK 713
The following BLAST results are available for this feature:
BLAST of EY692613 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
C3H19_ARATH2.116e-3739.65Zinc finger CCCH domain-containing protein 19 OS=A... [more]
C3H44_ARATH1.628e-2163.77Zinc finger CCCH domain-containing protein 44 OS=A... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-700-002-E08-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692613 ID=EY692613; Name=EY692613; organism=Citrus sinensis; type=EST; length=908bp
CCACGCGTCCGCACCAGCTTCTGCCTCTACAGGTGTGACACAATCTGCTC
CCAAAATTAATGAATCAGAGAAAATATGGCATTACCAGGATCCATCTGGA
AAAGTTCAAGGGCCATTTTCCATGGTCCAGCTGCGGAAATGGAACAACAC
TGGATATTTCCCTGCAAATTTGAGAATTTGGAGATCTAACGAGAAGCAGG
ATGACTCTATACTTCTGACTGATGCATTGGCTGGCAAGTTTCATAAAGAT
CCTCGCTTGGTGGACATCAGTCTGTCTCAAACAATCCCATACTCTGGGAA
ATCACATGGAGCATCTTCACAGCCAGGAATGGAAACTCCTGTTGGAGGAA
GTTCAAACTTTGATCAGAATCGTACGGCTTGGAATCAGCACGGTACTCCA
GGTTCTTCAGGGCAGTCTGGCGGCACTCCTTCGCTTGAGCTTCCGAAGCA
ATATAGAGATGGTTGGGCATCTGAGACAAACCTCCCGTCTCCGACTCCAA
CTCAAAGCACTGCAGGTGAAATTAAGGGGAAAACATTTGAAAAAGAATGG
TCCCCCACCCCTAATAATCAACCTGGTTCTCTCATGGTGACCAATCTATT
TCCAGGCAATGTANGGAAGCAATCTCCTCCTGCAACTGGTTTGGAGACTG
GGCAATCGCCAAATTTTTCTACTTCATCTTCTGCATCAAAATTGAGTGTT
AATGTAGATGGTTAAATATCACTCATGGAGTGACTTCGGCATCTAAGCCC
GAAACAGTGAATCACAGAGGGTGCTGGTCAGTCCCCACAGCTNACTGCAT
CCCAGTCGGGTGGTGCCTCTTGTGATCCCTGTGTGATATAAAAAGATTGG
TGCTATCTCCAACTTTTGGTCAAAGTGTGATGCAATGTTCACCTGTTGAA
GGCAGGGG
back to top