EY692601

Overview
NameEY692601
Unique NameEY692601
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length954
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY692601 vs. ExPASy Swiss-Prot
Match: NHX6_ARATH (Sodium/hydrogen exchanger 6 OS=Arabidopsis thaliana GN=NHX6 PE=1 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 5.216e-47
Identity = 67/84 (79.76%), Postives = 74/84 (88.10%), Query Frame = 2
Query:  146 LQISPA-NDPHGSPAKEQQAAGVGILLQIMMLVLSFILGHVLRRHKFYYLPEASASLLIGLIVSALTNISNTETNIRYSFSFNE 394
            LQISPA +DP G   K+QQAAGVGILLQIMMLVLSF+LGHVLRRHKFYYLPEASASLLIGLIV  L NISNTET+IR  F+F++
Sbjct:    5 LQISPAIHDPQGQE-KQQQAAGVGILLQIMMLVLSFVLGHVLRRHKFYYLPEASASLLIGLIVGGLANISNTETSIRTWFNFHD 87          

HSP 2 Score: 54.6842 bits (130), Expect = 5.216e-47
Identity = 27/34 (79.41%), Postives = 31/34 (91.18%), Query Frame = 1
Query:  484 FSWQ-KPFFSNFGAIVTFAIFGTFLASMVTGILV 582
            FS Q KPFFSNFGAIVTF++ GTF+ASMVTG+LV
Sbjct:  104 FSLQPKPFFSNFGAIVTFSVLGTFVASMVTGLLV 137          

HSP 3 Score: 51.6026 bits (122), Expect = 5.216e-47
Identity = 23/30 (76.67%), Postives = 26/30 (86.67%), Query Frame = 3
Query:  672 YLGGVMFVMYRLPFVECLXVGALISAQIPI 761
            YLGGVMF+MYRLPFVECL  G+LISA  P+
Sbjct:  138 YLGGVMFLMYRLPFVECLMFGSLISATDPV 167          
BLAST of EY692601 vs. ExPASy Swiss-Prot
Match: NHX5_ARATH (Sodium/hydrogen exchanger 5 OS=Arabidopsis thaliana GN=NHX5 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.722e-43
Identity = 61/82 (74.39%), Postives = 70/82 (85.37%), Query Frame = 2
Query:  152 ISPA-NDPHGSPAKEQQAAGVGILLQIMMLVLSFILGHVLRRHKFYYLPEASASLLIGLIVSALTNISNTETNIRYSFSFNE 394
            ISP  +DP G   K+QQAAGVGILLQIMMLVLSF+LGHVLRRH+F+YLPEAS SLLIGLIV  L NIS+TET+IR  F+F+E
Sbjct:    2 ISPVEHDPQGQ-VKQQQAAGVGILLQIMMLVLSFVLGHVLRRHRFHYLPEASGSLLIGLIVGILANISDTETSIRTWFNFHE 82          

HSP 2 Score: 52.373 bits (124), Expect = 8.722e-43
Identity = 28/34 (82.35%), Postives = 30/34 (88.24%), Query Frame = 1
Query:  484 FSWQ-KPFFSNFGAIVTFAIFGTFLASMVTGILV 582
            FS Q KPFFSNFGAIVTFAI GTF+AS+VTG LV
Sbjct:   99 FSLQPKPFFSNFGAIVTFAIIGTFVASVVTGGLV 132          

HSP 3 Score: 50.0618 bits (118), Expect = 8.722e-43
Identity = 24/39 (61.54%), Postives = 28/39 (71.79%), Query Frame = 3
Query:  672 YLGGVMFVMYRLPFVECLXVGALISAQIPILFCYISGDV 788
            YLGG M++MY+LPFVECL  GALISA  P+    I  DV
Sbjct:  133 YLGGSMYLMYKLPFVECLMFGALISATDPVTVLSIFQDV 171          
The following BLAST results are available for this feature:
BLAST of EY692601 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
NHX6_ARATH5.216e-4779.76Sodium/hydrogen exchanger 6 OS=Arabidopsis thalian... [more]
NHX5_ARATH8.722e-4374.39Sodium/hydrogen exchanger 5 OS=Arabidopsis thalian... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-700-002-D08-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692601 ID=EY692601; Name=EY692601; organism=Citrus sinensis; type=EST; length=954bp
TGCTCGACCCACGCGTCCGCACAAGACAAGAAACGTGACTGACATTGAAT
TTTAGGGCTCATTGTGAAGGAGAAAAGAACAACAATTGACATTGAATTTT
AGGCCTCGAAAGTTGGGACATTGGGGTATAATGACGGGAGAGGCATTGCA
GATATCTCCGGCGAACGATCCTCATGGAAGTCCCGCAAAGGAGCAGCAAG
CCGCTGGTGTTGGCATACTCCTCCAGATCATGATGCTTGTACTCTCTTTC
ATCCTCGGCCACGTCCTTCGTCGTCACAAATTCTATTATCTTCCGGAAGC
CAGCGCTTCTCTTCTCATAGGTTTAATTGTTAGTGCACTGACTAATATCT
CTAATACTGAAACAAATATTAGGTATTCATTTTCTTTTAATGAATTAATG
TCACTGGATTTTTCATTTTTGCTTTTATGATGTGATCTTAAAACTCTAGT
TGCTCAGTTGCAACTTGTCTCCTCATGATTTTGTTTTCCTGGCAGAAACC
TTTTTTTTCTAACTTTGGAGCCATTGTGACATTTGCTATTTTTGGAACCT
TTTTAGCTTCAATGGTCACAGGTATACTAGTGTAAGTGTTTCTTTACATA
GAAATGACCGGATTTTGTATTGTACATTGAAATCCTGGCTTCTGATGTTT
TCTTTCCTGCTTTTTGATAGNTACCTTGGTGGAGTGATGTTCGTCATGTA
CAGACTTCCATTTGTTGAGTGCTTGATNGTTGGTGCTCTTATTTCAGCAC
AGATCCCTATACTGTTTTGCTATATTTCAGGGGACGTGTGCGCTTTTATT
TGTCTATTGACTGGTTAGCCAAAATAATTGATCAGCAAATATAGCATATA
CTATCTTTGAGCAAATAAATTCTATATTTTTTAAAGAGAAAGGGGATAAA
TTGAAGATTGGAGAATGAATCTCTTCTACTTGCTGGGGCTTAGTNCTAGG
AGTC
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