EY692595

Overview
NameEY692595
Unique NameEY692595
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length965
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY692595_ssr163 microsatellite EY692595_ssr163:163..177. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of EY692595 vs. ExPASy Swiss-Prot
Match: DR102_ARATH (DNA-damage-repair/toleration protein DRT102 OS=Arabidopsis thaliana GN=DRT102 PE=2 SV=2)

HSP 1 Score: 165.236 bits (417), Expect = 4.975e-40
Identity = 98/211 (46.45%), Postives = 120/211 (56.87%), Query Frame = 2 
Query:  185 PLKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEVGRRVXXXXXXXIXXXXXXXXXXXXXXAIFANKNPGVFAATCLTPADALNARSINNCNVLAVSGMSTSKESAVEILDTWLKTPFKAHAPRRVLSHGKRTCRGFSTSQ*SKMP*L-----VXMIN*IMIXXXXXXXXXXXXKTRELNPGEMIPGGSMKNGRESPTPGI 802
            PLKII GAD FGA LKDA+V+HLRSL IDVED G S YYS G+EVGRRV       +              A+FANK PGV+AATCL+  DA+NARSI+NCNVLA SG+ TS E+A+EI D W+KTPFK+  P             F  +  S+M  +            +             K RE  P +++PGGSMK  RE+PT  I
Sbjct:   11 PLKIITGADDFGASLKDAMVTHLRSLGIDVEDTGVSSYYSAGSEVGRRVSASSSSEVRGLVCCGTGVGV--AMFANKFPGVYAATCLSVEDAVNARSISNCNVLAFSGIKTSPETALEIFDAWIKTPFKSPCPASGSEPWSSVISSFLDNSLSEMSQIGKSTAGDSTTKKIDETTASCVICCLAKNREFTPVDIMPGGSMKIVRETPTSAI 219
The following BLAST results are available for this feature:
BLAST of EY692595 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
DR102_ARATH4.975e-4046.45DNA-damage-repair/toleration protein DRT102 OS=Ara... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-700-002-D02-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692595 ID=EY692595; Name=EY692595; organism=Citrus sinensis; type=EST; length=965bp
CTGTACGCTGCAGTACGGGTCGGNNATCCNNTGCTCGACCACGCGTCCGC
CCACGCGTCCTTGGACGCGTGGGCGGACGCGTGGGCGGACGCGTGGGCTT
ACTGACTCTCCACTGAACTCATCCCTCGGAATAGTCAACTCGTAGTGAAC
CATGGCTGAAAACGCCGCCGCCGCCGCTCCCAGCCCTCTCAAGATCATCG
CAGGCGCCGACTCCTTCGGCGCCGAATTGAAAGACGCTCTGGTCTCCCAC
CTCCGGTCACTCAACATAGACGTGGAAGATCTCGGCACCTCCGATTACTA
CTCCATCGGCGCCGAGGTCGGCCGCCGCGTCTCCTCCTCTGATTCCTCCG
ACATCACCACACGCGGCGTCGTCGCCTGCGGAACCGGAGTGGGCGTCGCA
ATCTTCGCCAACAAAAACCCCGGCGTCTTCGCCGCCACGTGTCTCACCCC
CGCCGACGCCCTGAACGCCCGCTCCATCAACAACTGCAACGTCCTCGCTG
TCTCAGGTATGTCCACTTCCAAAGAATCCGCCGTCGAAATCCTGGACACG
TGGCTTAAAACCCCTTTTAAGGCCCATGCCCCCCGTCGGGTTTTAAGCCA
TGGGAAGAGAACTTGTCGTGGTTTCTCGACCAGTCAATGATCGAAAATGC
CCTGATTGGTAANAATGATAAATTAGATAATGATTCTAGTGGCAGGACTT
GGAGCATATGGTGGTTAGGTTAAGACCAGGGAATTGAATCCGGGGGAAAT
GATTCCGGGTGGATCAATGAAGAATGGTAGGGAGAGTCCAACGCCCGGCA
TTTGGGAGATTTAAGGCCGGGAGTGGGGGGCCCGGGCCATCCCCTACATT
TGGGCATGATCTGGTGGGGNTGGAAGGGAACAACAAGGTGGGGAAATTGC
ATAAAGGGGAAAGGTCGATTTGATGGTGGGGATTATTGGTTACCGCGGGG
GGGGATGTGATATAG
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