EY692566

Overview
NameEY692566
Unique NameEY692566
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length888
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9230 contig Csv1_Contig9230:1..889. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY692566 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 321.242 bits (822), Expect = 4.361e-95
Identity = 156/176 (88.64%), Postives = 163/176 (92.61%), Query Frame = 2
Query:  149 ETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFE 676
            E ARQI+G+R +QS T   RK SFVVRAASTPPVKQGA+R LWFASKQSLSYLDG LPGD+GFDPLGLSDPEGTGGFIEPKWLAYGEVINGR+AMLGA GAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWAD YTLFVLEMALMGFAEHRRFQDWA PGSMG+QYFLG E
Sbjct:   17 EAARQIIGSRISQSVT---RKASFVVRAASTPPVKQGANRQLWFASKQSLSYLDGRLPGDFGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLE 189          

HSP 2 Score: 49.2914 bits (116), Expect = 4.361e-95
Identity = 29/54 (53.70%), Postives = 33/54 (61.11%), Query Frame = 3
Query:  729 PSGSWEDEKSMKDFKLKEVKNGRXACWH-LGLLCSRSCTGVGPYKT-YGSLADP 884
            P G  +DEKSMK+ KLKE+KNGR A    LG       TGVGPY+     LADP
Sbjct:  208 PLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADP 261          
BLAST of EY692566 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 311.612 bits (797), Expect = 1.656e-91
Identity = 153/177 (86.44%), Postives = 158/177 (89.27%), Query Frame = 2
Query:  149 ETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGA-DRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFE 676
            E  RQ   ARS  S  G SRKG  +VRAA+TPPVKQG  DRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEP+WLAYGEVINGR+AMLGAVGAIAPE LGK GLIPQETALAWFQTGVIPPAGTYNYWAD YTLFVLEMALMGFAEHRRFQDWA PGSMG+QYFLG E
Sbjct:   17 EAVRQSFRARSLPSSVGCSRKG--LVRAAATPPVKQGGVDRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLE 191          

HSP 2 Score: 46.9802 bits (110), Expect = 1.656e-91
Identity = 28/54 (51.85%), Postives = 33/54 (61.11%), Query Frame = 3
Query:  729 PSGSWEDEKSMKDFKLKEVKNGRXACWH-LGLLCSRSCTGVGPYKT-YGSLADP 884
            P G  +DEKS+K+ KLKEVKNGR A    LG       TGVGPY+     +ADP
Sbjct:  210 PLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHVADP 263          
BLAST of EY692566 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 1.880e-26
Identity = 69/166 (41.57%), Postives = 89/166 (53.61%), Query Frame = 2
Query:  164 ILGARSAQSPTGSS-RKGSFVV----RAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPG 643
            I+GA  A    G   R   F+     R+ +   V    DRPLWF       +LDGSLPGD+GFDPLGL SDPE        KW A  E+++ R+AMLGA G   PE L K G++      +W+       AG   Y+ D  TLFV+E+ L+G+AE RR+ D   PG
Sbjct:   26 IVGATKASFLGGKRLRVSKFIAPVGSRSVAVSAVAADPDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPESL------KWNAQAELVHSRWAMLGAAGIFIPEFLTKIGVL---NTPSWY------TAGEQEYFTDTTTLFVIELVLIGWAEGRRWADIIKPG 176          

HSP 2 Score: 30.0314 bits (66), Expect = 1.880e-26
Identity = 21/62 (33.87%), Postives = 27/62 (43.55%), Query Frame = 3
Query:  729 PSGSWEDE--------KSMKDFKLKEVKNGRXACWH-LGLLCSRSCTGVGPY-KTYGSLADP 884
            P G W D           +K+ + KE+KNGR A    +G       TG GP    +  LADP
Sbjct:  197 PGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 258          
BLAST of EY692566 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 9.146e-26
Identity = 61/140 (43.57%), Postives = 82/140 (58.57%), Query Frame = 2
Query:  227 RAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPG 643
            R+A+T  V    DRPLWF       +LDGSLPGD+GFDPLGL SDPE        +W    E+++ R+AMLGA G   PE+L K G++      +W+       AG   Y+ D  TLF++E+ L+G+AE RR+ D   PG
Sbjct:   52 RSATTVCVAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESL------RWNQQAELVHCRWAMLGAAGIFIPELLTKIGIL---NTPSWY------TAGEQEYFTDTTTLFIVELVLIGWAEGRRWADIIKPG 176          

HSP 2 Score: 30.0314 bits (66), Expect = 9.146e-26
Identity = 21/62 (33.87%), Postives = 27/62 (43.55%), Query Frame = 3
Query:  729 PSGSWEDE--------KSMKDFKLKEVKNGRXACWH-LGLLCSRSCTGVGPY-KTYGSLADP 884
            P G W D           +K+ + KE+KNGR A    +G       TG GP    +  LADP
Sbjct:  197 PGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 258          
BLAST of EY692566 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 5.039e-20
Identity = 59/143 (41.26%), Postives = 75/143 (52.45%), Query Frame = 2
Query:  230 AASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGR 655
            +A T   K  A +  W     S  YL GSL GD GFDPLGL+ DPE        KW    E++NGR+AMLG  G + PE+  K G+I       W+       AG   Y+A   TLFV+E  L  + E RR+QD  NPGS+ +
Sbjct:   42 SAKTSSFKVEAKKGEWLPGLASPDYLTGSLAGDNGFDPLGLAEDPENL------KWFVQAELVNGRWAMLGVAGMLLPEVFTKIGII---NVPEWYD------AGKEQYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQ 169          
BLAST of EY692566 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.582e-20
Identity = 63/156 (40.38%), Postives = 79/156 (50.64%), Query Frame = 2
Query:  191 PTGSSRKGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGR 655
            P G S   SF V A      K+G     W     S  YL GSLPGD GFDPLGL+ DPE        +W    E++NGR+AMLG  G + PE+    G+I       W+       AG   Y+A   TLFV+E  L  + E RR+QD  NPGS+ +
Sbjct:   38 PVGCSPSASFKVEA------KKGE----WLPGLASPGYLTGSLPGDNGFDPLGLAEDPENL------RWFVQAELVNGRWAMLGVAGMLLPEVFTSIGII---NVPKWY------AAGKEEYFASSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQ 168          
BLAST of EY692566 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.259e-16
Identity = 54/133 (40.60%), Postives = 71/133 (53.38%), Query Frame = 2
Query:  257 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTG-VIPPAGTYNYWADP--------YTLFVLEMALMGFAEHRR 619
            G DRP +    S+Q+ SYL G  PGDYG+D  GLS DPE    F   + L   EVI+ R+AMLGA+G + PEIL K G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMGF E  R
Sbjct:   51 GEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPE---TFARNREL---EVIHCRWAMLGALGCVFPEILSKNGVTFGEA--VWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAAQVVLMGFVEGYR 175          

HSP 2 Score: 36.965 bits (84), Expect = 1.259e-16
Identity = 20/57 (35.09%), Postives = 31/57 (54.39%), Query Frame = 3
Query:  720 SIQPSGSWEDEKSMKDFKLKEVKNGRXACWHL-GLLCSRSCTGVGPYKT-YGSLADP 884
            +  P G  +D ++  + K+KE+KNGR A + + G       TG GP +  Y  +ADP
Sbjct:  193 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHVADP 249          
BLAST of EY692566 vs. ExPASy Swiss-Prot
Match: CB120_HORVU (Chlorophyll a-b binding protein 1B-20, chloroplastic (Fragment) OS=Hordeum vulgare GN=LHC Ib-20 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.588e-16
Identity = 53/128 (41.41%), Postives = 71/128 (55.47%), Query Frame = 2
Query:  275 WFASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGR 655
            W    QS +YLDGSL GD GFDPL L+ DPE      + +W    +V+NGR+AMLG  G + PE+L KAGL+    A  W +       G   Y+A   T   + M+   + E RR+QD  NPGS+ +
Sbjct:   36 WLPGLQSPAYLDGSLEGDNGFDPLALAEDPE------DLRWFVQADVVNGRWAMLGVAGMLIPEVLTKAGLM---NAPEWLRL-----PGKETYFASSSTALRVHMS-STYVEIRRWQDIKNPGSVNQ 148          
BLAST of EY692566 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.765e-16
Identity = 54/133 (40.60%), Postives = 72/133 (54.14%), Query Frame = 2
Query:  257 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRR 619
            GADRP +    S+Q+ SYL G  PGDYG+D  GLS DPE    F + + L   EVI+ R+AMLGA+G I PE+L K G+  Q     WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R
Sbjct:   50 GADRPKFLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCIFPELLSKNGV--QFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQVVLMGLIEGYR 174          

HSP 2 Score: 35.039 bits (79), Expect = 2.765e-16
Identity = 19/57 (33.33%), Postives = 30/57 (52.63%), Query Frame = 3
Query:  720 SIQPSGSWEDEKSMKDFKLKEVKNGRXACWHL-GLLCSRSCTGVGPYKTYGS-LADP 884
            +  P G  +D ++  + K+KE+KNGR A + + G       TG GP +     +ADP
Sbjct:  192 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHIADP 248          
BLAST of EY692566 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.593e-16
Identity = 58/169 (34.32%), Postives = 87/169 (51.48%), Query Frame = 2
Query:  149 ETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRR 619
            E +R++LG   A+     +     V ++A +  +  GADRP +    S ++ SYL+G   GDYG+D  GLS DPE    F   + L   EVI+ R+AMLGA+G + PE+L K+G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R
Sbjct:   23 ELSRKVLGNVEARVTMRRT-----VSKSAGSDTIWYGADRPKFLGPFSGETPSYLNGEFAGDYGWDTAGLSSDPET---FARNREL---EVIHARWAMLGALGCLTPELLAKSGVKFGEA--VWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYR 178          

HSP 2 Score: 36.1946 bits (82), Expect = 3.593e-16
Identity = 21/57 (36.84%), Postives = 29/57 (50.88%), Query Frame = 3
Query:  720 SIQPSGSWEDEKSMKDFKLKEVKNGRXACWHL-GLLCSRSCTGVGPYKTYGS-LADP 884
            S  P G  +D  +  + K+KE+KNGR A + + G       TG GP +     LADP
Sbjct:  196 SFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADP 252          
The following BLAST results are available for this feature:
BLAST of EY692566 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
CB13_SOLLC4.361e-9588.64Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB23_PEA1.656e-9186.44Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB12_PETHY1.880e-2641.57Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB12_SOLLC9.146e-2643.57Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB24_ARATH5.039e-2041.26Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB24_PEA6.582e-2040.38Chlorophyll a-b binding protein P4, chloroplastic ... [more]
CB26_PETSP1.259e-1640.60Chlorophyll a-b binding protein 37, chloroplastic ... [more]
CB120_HORVU2.588e-1641.41Chlorophyll a-b binding protein 1B-20, chloroplast... [more]
CB21_LEMGI2.765e-1640.60Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_PHYPA3.593e-1634.32Chlorophyll a-b binding protein, chloroplastic OS=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-700-002-A07-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692566 ID=EY692566; Name=EY692566; organism=Citrus sinensis; type=EST; length=888bp
CCACGCGTCCGGCTTATTCTCCAAAAGCAGAAGCAGAAAGCCGAAGCACT
TTTAATTTATCGTATTGAAGTAGAGAAACAAGAGGAAAAAAGAAAATTAA
AAAATGGCAACCCAAGCTTTGGTTTCATCATCTCTTACATCTTCAGTGGA
GACTGCGAGACAAATTCTTGGAGCAAGATCAGCTCAATCCCCAACTGGGT
CATCAAGAAAAGGTTCCTTTGTTGTTAGGGCAGCTTCTACTCCTCCTGTT
AAGCAAGGAGCAGACAGACCGTTGTGGTTTGCATCCAAACAAAGCCTTTC
ATACTTGGATGGCAGCCTCCCCGGAGACTATGGATTCGACCCACTTGGTC
TCTCAGACCCTGAAGGCACAGGAGGGTTCATTGAGCCAAAATGGCTGGCC
TACGGCGAGGTCATCAACGGTCGTTATGCCATGTTGGGAGCTGTGGGAGC
CATTGCACCGGAGATTCTTGGCAAGGCAGGCCTCATTCCGCAAGAAACTG
CCCTGGCCTGGTTCCAAACCGGTGTGATCCCCCCAGCGGGAACATACAAC
TACTGGGCAGACCCTTACACACTTTTCGTCCTGGAAATGGCACTCATGGG
ATTTGCCGAGCACCGGAGATTCCAAGACTGGGCAAATCCAGGATCAATGG
GCAGGCAATACTTCCTCGGATTCGAGAATACTTGGGAAGATCCGGCGATC
CGGCTTACCCTGGAGGACCTCTATTCAACCCTCTGGGTCTTGGGAAGATG
AGAAGTCAATGAAGGATTTCAAGCTCAAGGAAGTGAAGAATGGAAGATTN
GCATGTTGGCATCTTGGGTTACTTTGTTCAAGGTCTTGTACAGGAGTTGG
GCCTTACAAAACCTATGGATCACTTGCTGATCCTGNAA
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