EY692496

Overview
NameEY692496
Unique NameEY692496
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length896
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY692496_ssr319 microsatellite EY692496_ssr319:319..328. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9888 contig Csv1_Contig9888:32..927. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY692496 vs. ExPASy Swiss-Prot
Match: PHR2_ARATH (Blue-light photoreceptor PHR2 OS=Arabidopsis thaliana GN=PHR2 PE=2 SV=2)

HSP 1 Score: 253.447 bits (646), Expect = 1.245e-66
Identity = 146/260 (56.15%), Postives = 177/260 (68.08%), Query Frame = 3
Query:   99 KQNLENPENHSNEEQNPLATIPSQSPFATLSLSFSLPQVLPANTFFIQPKISTLFSHQPNKVKVPTQAXXXXXXXXXXXXXXXXXXXXFKSTLSANPLQSPLSLGPHRPLDPNNGAAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGSRRLFWSSWLKHWS*CSVRAQRGVT**G-*IGGEDEAAMKTRXLS-EYFWGA-LVHLDDL 869
            ++NL NPE  S EEQNPLA   S  P A+LSL+     + P++T F++     LF+H PNKVK+PTQA                    FKST++ANPLQSPLS+ P RP+DP++ AA+RRA++VWFRNDLRVHDNE LN+AN+E VSVLPVYCFDPRDYGKSSSGFDKTGP+RA FLIESVS+LRKNLQARGS+LVVRVG          K     +V A R V+       G+ E AMK   +  +YFWG+ L HLDDL
Sbjct:    7 EENL-NPETKSAEEQNPLAIFHSSLPIASLSLT-----LFPSSTQFLK-----LFAHHPNKVKIPTQASSLTHLSLSSVSPFPSSRISFKSTIAANPLQSPLSIVPRRPVDPSSAAALRRAAVVWFRNDLRVHDNECLNSANDECVSVLPVYCFDPRDYGKSSSGFDKTGPFRAQFLIESVSELRKNLQARGSNLVVRVGKPEAVLVELAKEIGADAVYAHREVSHDEVKAEGKIETAMKEEGVEVKYFWGSTLYHLDDL 255          
BLAST of EY692496 vs. ExPASy Swiss-Prot
Match: CRYD_GLOVI (Cryptochrome DASH OS=Gloeobacter violaceus GN=cry PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.209e-22
Identity = 61/138 (44.20%), Postives = 87/138 (63.04%), Query Frame = 3
Query:  465 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGSRRLFWSSWLKHWS*CSVRAQRGVT**G*IGGED-EAAMKTRXLS-EYFWG-ALVHLDDL 869
            +VW+RNDLRVHD+E L +A +++  V+ +YCFDPR +GK+  GF+KTGP+RA FL+ESV+DLR++L+  GSDL+VR G       + +      +V     VT    +   D +AA+    +    FWG  LVH DDL
Sbjct:    7 LVWYRNDLRVHDHEPLTSALHKNARVVALYCFDPRQFGKAPFGFEKTGPFRARFLLESVADLRRSLRQLGSDLLVRRGHPEEVIPALVSELEIAAVHYHGEVTSEELVVERDLQAALAPLNVPVRSFWGTTLVHPDDL 144          
BLAST of EY692496 vs. ExPASy Swiss-Prot
Match: CRYD_SYNY3 (Cryptochrome DASH OS=Synechocystis sp. (strain PCC 6803) GN=cry PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 4.337e-17
Identity = 37/78 (47.44%), Postives = 57/78 (73.08%), Query Frame = 3
Query:  465 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVG 698
            +VWFRNDLR+HD+E L+ A    +++  VYC+DPR + ++  GF KTGP+R++FL +SV +L ++LQ  G+ L+V  G
Sbjct:    9 LVWFRNDLRLHDHEPLHRALKSGLAITAVYCYDPRQFAQTHQGFAKTGPWRSNFLQQSVQNLAESLQKVGNKLLVTTG 86          

HSP 2 Score: 23.0978 bits (48), Expect = 4.337e-17
Identity = 9/23 (39.13%), Postives = 13/23 (56.52%), Query Frame = 1
Query:  733 IGADAVYAHREVSHDEXKSEEKM 801
            I A  +Y HREV+ +E   E  +
Sbjct:   99 INAKTIYYHREVTQEELDVERNL 121          
BLAST of EY692496 vs. ExPASy Swiss-Prot
Match: CRYD_ORYSJ (Cryptochrome DASH, chloroplastic/mitochondrial OS=Oryza sativa subsp. japonica GN=CRYD PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 2.091e-16
Identity = 45/81 (55.56%), Postives = 56/81 (69.14%), Query Frame = 3
Query:  462 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSS--GFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVG 698
            +IVWFRNDLRV DNE++  A   S +VLPVYC DPR    S+   GF KTG  RA FLIE + DL++NL  +G DL++R G
Sbjct:   86 AIVWFRNDLRVLDNEAVVRAWAASDAVLPVYCVDPRISAGSTHYFGFPKTGALRAQFLIECLEDLKRNLTKQGLDLLIRHG 166          

HSP 2 Score: 21.9422 bits (45), Expect = 2.091e-16
Identity = 9/26 (34.62%), Postives = 15/26 (57.69%), Query Frame = 1
Query:  730 SIGADAVYAHREVSHDEXKSEEKMRQ 807
            ++ A  VYAH+E   +E   E  +R+
Sbjct:  178 AVTAHTVYAHKETCSEELLVEHLVRK 203          

HSP 3 Score: 21.1718 bits (43), Expect = 2.091e-16
Identity = 8/14 (57.14%), Postives = 11/14 (78.57%), Query Frame = 2
Query:  695 GKPETVLVELAKAL 736
            GKPE +L  +AKA+
Sbjct:  166 GKPEDILPSIAKAV 179          
BLAST of EY692496 vs. ExPASy Swiss-Prot
Match: CRYD_SOLLC (Cryptochrome DASH, chloroplastic/mitochondrial OS=Solanum lycopersicum GN=CRYD PE=3 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 5.862e-16
Identity = 62/158 (39.24%), Postives = 85/158 (53.80%), Query Frame = 3
Query:  462 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSS-SGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGSRRLFWSSWLK---------HWS*CS--VRAQRGVT---------**G*IGGEDEAAMKTRXLSEYFWGA-LVHLDDL 869
            +IVWFRNDLRV DNE+L  A   S ++LPVYC DPR +G +   G  KTG  RA F+IE ++DL++NL  RG DL+++ G       S  K         H   CS  V+ ++ VT           G IG +  +   T+   E  WG+ + H+DDL
Sbjct:   80 AIVWFRNDLRVLDNEALLRAWVSSEAILPVYCVDPRLFGTTHYFGMPKTGALRAQFIIECLNDLKRNLVKRGLDLLIQHGKPEDIVPSLAKAYKAHTVYAHKETCSEEVKVEKMVTRNLQKLVSPSSGGIGNDPGSGNTTKL--ELVWGSTMYHIDDL 235          
BLAST of EY692496 vs. ExPASy Swiss-Prot
Match: CRYD_XENLA (Cryptochrome DASH OS=Xenopus laevis GN=cry-dash PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.000e-15
Identity = 42/82 (51.22%), Postives = 56/82 (68.29%), Query Frame = 3
Query:  456 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDY-GKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVG 698
            R  I   RNDLR+HDNE L+ A+  +  ++P+YCFDPR Y G     F KTGP+R  FL+ESV DLR  L+ +GS+L++R G
Sbjct:    6 RVIICLLRNDLRLHDNEVLHWAHRNADQIVPLYCFDPRHYVGTHYFNFPKTGPHRLKFLLESVRDLRITLKKKGSNLLLRRG 87          
BLAST of EY692496 vs. ExPASy Swiss-Prot
Match: CRYD_DANRE (Cryptochrome DASH OS=Danio rerio GN=cry-dash PE=2 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 4.849e-15
Identity = 41/82 (50.00%), Postives = 52/82 (63.41%), Query Frame = 3
Query:  456 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDY-GKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVG 698
            R  I   RNDLR+HDNE  + A   +  ++P+YCFDPR Y G     F KTGP+R  FL++SV DLR  L+  GS L+VR G
Sbjct:    5 RTVICLLRNDLRLHDNEVFHWAQRNAEHIIPLYCFDPRHYQGTYHYNFPKTGPFRLRFLLDSVKDLRALLKKHGSTLLVRQG 86          

HSP 2 Score: 20.7866 bits (42), Expect = 4.849e-15
Identity = 7/17 (41.18%), Postives = 12/17 (70.59%), Query Frame = 1
Query:  757 HREVSHDEXKSEEKMRQ 807
            H EV+ +E   EEK+++
Sbjct:  108 HEEVASEEKSVEEKLKE 124          
BLAST of EY692496 vs. ExPASy Swiss-Prot
Match: CRYD_ARATH (Cryptochrome DASH, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=CRYD PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 6.287e-15
Identity = 41/80 (51.25%), Postives = 55/80 (68.75%), Query Frame = 3
Query:  462 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSS-SGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVG 698
            +I+WFRNDLRV DN++L  A + S ++LPVYC DPR +  +    F KTG  R  FL+E + DLRKNL  RG +L++R G
Sbjct:   86 TILWFRNDLRVLDNDALYKAWSSSDTILPVYCLDPRLFHTTHFFNFPKTGALRGGFLMECLVDLRKNLMKRGLNLLIRSG 165          

HSP 2 Score: 21.557 bits (44), Expect = 6.287e-15
Identity = 9/13 (69.23%), Postives = 10/13 (76.92%), Query Frame = 2
Query:  692 SGKPETVLVELAK 730
            SGKPE +L  LAK
Sbjct:  164 SGKPEEILPSLAK 176          
BLAST of EY692496 vs. ExPASy Swiss-Prot
Match: CRYD_RHOBA (Cryptochrome DASH OS=Rhodopirellula baltica GN=cry PE=3 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 1.799e-14
Identity = 37/79 (46.84%), Postives = 53/79 (67.09%), Query Frame = 3
Query:  462 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVG 698
            ++VWFRNDLR  D+E    A+        V+C DPR +  +  GF +TGP+RA FLIE+++DLR  L++ G +L+VRVG
Sbjct:    4 ALVWFRNDLRTIDHEPFLRASTAD-RCFAVHCIDPRQFETTELGFQRTGPFRARFLIENLTDLRSRLRSLGGELIVRVG 81          

HSP 2 Score: 21.557 bits (44), Expect = 1.799e-14
Identity = 9/26 (34.62%), Postives = 15/26 (57.69%), Query Frame = 1
Query:  730 SIGADAVYAHREVSHDEXKSEEKMRQ 807
            S+  DAV+ H E   +E  + E ++Q
Sbjct:   93 SLAIDAVHFHHEPRTEEADTAESVQQ 118          
BLAST of EY692496 vs. ExPASy Swiss-Prot
Match: CRYD_NATPD (Cryptochrome DASH OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=cry PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.166e-14
Identity = 40/79 (50.63%), Postives = 55/79 (69.62%), Query Frame = 3
Query:  462 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVG 698
            ++VWFR+DLRV DN +L  A   + +V+PVY FDP  Y +S  G  KTG +RA F  ++V+DLR +L+ RG DL+VR G
Sbjct:    4 AVVWFRDDLRVTDNPTLADAVAAAETVIPVYTFDPDRYTESEYGPPKTGGHRAVFRRQAVADLRASLRDRGGDLLVRSG 82          
The following BLAST results are available for this feature:
BLAST of EY692496 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
PHR2_ARATH1.245e-6656.15Blue-light photoreceptor PHR2 OS=Arabidopsis thali... [more]
CRYD_GLOVI3.209e-2244.20Cryptochrome DASH OS=Gloeobacter violaceus GN=cry ... [more]
CRYD_SYNY34.337e-1747.44Cryptochrome DASH OS=Synechocystis sp. (strain PCC... [more]
CRYD_ORYSJ2.091e-1655.56Cryptochrome DASH, chloroplastic/mitochondrial OS=... [more]
CRYD_SOLLC5.862e-1639.24Cryptochrome DASH, chloroplastic/mitochondrial OS=... [more]
CRYD_XENLA1.000e-1551.22Cryptochrome DASH OS=Xenopus laevis GN=cry-dash PE... [more]
CRYD_DANRE4.849e-1550.00Cryptochrome DASH OS=Danio rerio GN=cry-dash PE=2 ... [more]
CRYD_ARATH6.287e-1551.25Cryptochrome DASH, chloroplastic/mitochondrial OS=... [more]
CRYD_RHOBA1.799e-1446.84Cryptochrome DASH OS=Rhodopirellula baltica GN=cry... [more]
CRYD_NATPD7.166e-1450.63Cryptochrome DASH OS=Natronomonas pharaonis (strai... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-700-001-C07-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692496 ID=EY692496; Name=EY692496; organism=Citrus sinensis; type=EST; length=896bp
CCACGCGTCCGCGGACGCGTGGGGGCAGCTTATCTCCATCCAGTTCAGCT
GCAACACAATTTTCATCTTCCATCTTTAGGGTTGAAATGGATCCCAATAA
GCAAAATCTTGAAAACCCAGAAAACCATTCCAATGAGGAACAAAACCCAC
TTGCGACTATCCCTTCTCAATCACCATTTGCCACTCTTTCCCTCTCATTT
TCTCTCCCCCAAGTCCTCCCAGCCAACACTTTCTTCATTCAACCCAAAAT
TTCCACCTTATTTTCCCACCAACCAAACAAGGTCAAAGTCCCCACACAAG
CCTCTACGCTTACCCACATCTCTCTCTCCGCCTCCTCCACTCTCTCTCCT
TCCAAAATTTCATTCAAGTCCACACTCTCCGCAAACCCTCTTCAGAGCCC
TCTCTCTTTAGGGCCCCACCGCCCCTTGGACCCGAACAATGGGGCCGCAA
TTCGTCGAGCTTCCATTGTTTGGTTCCGCAACGACTTGCGGGTCCATGAT
AACGAATCTCTCAACACCGCCAATAACGAGAGCGTCTCTGTTTTGCCTGT
TTATTGTTTCGACCCGAGGGATTACGGCAAATCCTCTTCTGGCTTTGACA
AAACGGGGCCGTATCGGGCATCGTTTTTGATTGAGTCAGTTTCTGACCTT
CGCAAGAACTTGCAGGCACGTGGGTCTGATCTCGTGGTGAGAGTGGGAAG
CCGGAGACTGTTCTGGTCGAGTTGGCTAAAGCATTGGAGCTGATGCAGTG
TACGCGCACAGAGAGGTGTCACATGATGAGGNTAAATCGGAGGAGAAGAT
GAGGCAGCGATGAAGACGAGGNAATTGAGTGAGTACTTTTGGGGAGCACT
TGTACATCTTGATGATTTGCGNTTAAGTGGGGGAAATGCGACTANT
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