EY692493

Overview
NameEY692493
Unique NameEY692493
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length896
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY692493 vs. ExPASy Swiss-Prot
Match: PP123_ARATH (Pentatricopeptide repeat-containing protein At1g74750 OS=Arabidopsis thaliana GN=At1g74750 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.217e-29
Identity = 76/175 (43.43%), Postives = 109/175 (62.29%), Query Frame = 1
Query:  223 MLRAKHITNLSSTARSFFLNGSRCSASDGSSCTCSEDETCVSRRQH-NAQMVYTPARAGVVVSGEAAKAAGLQKSERVSVP-----------------SPSSLGRSDHVSYASSVDAVPKDVLTSSPISDQFVKAGVAAVCFLSDLVNYKLPALDGSGTANSPTNFMVDPTQPLS 693
            M+RAKHI+NLSS+ARSFFL+GSR SA+DG+SCTC+EDE+ VS+RQ    ++V T  RA  + +G A     ++  + + VP                 SP+  G++D V++AS++  + +DV    PI DQ  KAG+  V  LSD+ NYK+P  DG+     P + MVDPT+P+S
Sbjct:    1 MIRAKHISNLSSSARSFFLSGSRPSAADGNSCTCAEDESGVSKRQQIRTEVVQTGKRASNLAAGLAGSILPVEAGKPLVVPKTVEHFTRPSLLPQHVSSPALPGKADSVNHASAI--IKEDV--GVPIGDQIFKAGIGNVNLLSDIANYKIPLSDGTEVVGLPKSCMVDPTRPIS 171          
BLAST of EY692493 vs. ExPASy Swiss-Prot
Match: PPR49_ARATH (Pentatricopeptide repeat-containing protein At1g18900 OS=Arabidopsis thaliana GN=At1g18900 PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.914e-28
Identity = 80/181 (44.20%), Postives = 107/181 (59.12%), Query Frame = 1
Query:  223 MLRAKHITNLSSTARSFFLNGSRCSASDGSSCTCSEDETCVSRRQ-----------HNAQMVYTPARAGVVVSGEAAKAAGLQKSERVSVP---------SPSSLGRSDHVSYASSVDAVPKDV---LTSSPISDQFVKAGVAAVCFLSDLVNYKLPALDGSGTA-NSPTNFMVDPTQPLS 693
            M+RAKHI+NLSSTARSFFLNGSR S +DG+SC  S+DE CVS+RQ             + ++  P+  G ++ GE  K    +K +    P         SP+   +S  V+YAS+V  V ++V    +S PI DQ  KAG+ AV FLSDL N K+P+ DG   A   P + MVDPT+P+S
Sbjct:    1 MIRAKHISNLSSTARSFFLNGSRTSVTDGNSCVYSDDENCVSKRQQLRKEAGQTEKRPSSILPKPSVVGCILPGEVTKPVVPKKVDDFGRPSLLPQHVSSSPALPLKSHSVNYASTV--VREEVEGKASSEPIGDQIFKAGIVAVNFLSDLSNCKIPSYDGGSDAFGLPKSCMVDPTRPIS 179          
The following BLAST results are available for this feature:
BLAST of EY692493 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PP123_ARATH1.217e-2943.43Pentatricopeptide repeat-containing protein At1g74... [more]
PPR49_ARATH3.914e-2844.20Pentatricopeptide repeat-containing protein At1g18... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-700-001-C04-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692493 ID=EY692493; Name=EY692493; organism=Citrus sinensis; type=EST; length=896bp
CCACGCGTCCGGTAAAAGCTGTTACTGTGTTAATATGAAGCCTTTGAGTT
AACCTGACAGCCACCCCAACTTGGTTGGAAAAAAAGAAAAAACCTCAGGA
GTTGACGGCAGTAGAAGAGAGAAGGGAGCCGCCCCTCTCATTCTCTCAAA
AAAATTTCTCCATTTTTTTTCTTTTTCTTTCTTTGAACACACACCGAGAG
TCTTATACACTACTTTCAGATAATGTTGCGAGCAAAGCATATAACTAACC
TTTCAAGCACAGCTCGATCATTTTTTCTTAATGGCTCACGATGTAGCGCA
TCTGATGGAAGTTCATGTACTTGCTCTGAGGATGAAACTTGTGTCTCCCG
AAGGCAGCACAATGCTCAAATGGTATACACCCCTGCTCGGGCAGGTGTTG
TGGTTTCAGGGGAAGCAGCAAAAGCTGCGGGTTTACAAAAATCAGAGAGA
GTATCTGTTCCCTCTCCCAGTTCTTTAGGAAGATCAGATCATGTCAGTTA
TGCTAGTAGCGTTGATGCTGTTCCAAAGGATGTGCTCACATCCTCACCTA
TTTCAGACCAGTTTGTTAAGGCAGGTGTTGCGGCAGTGTGTTTTTTGTCT
GATTTAGTAAATTATAAGCTTCCTGCACTAGATGGAAGTGGTACAGCAAA
CTCTCCAACAAACTTTATGGTCGATCCCACCCAGCCTCTTTCAATATAAA
ACCTGCAAATGTGAAGACATTAGAAGAGAAATGTTTCCAAGTCTACCAAA
CTCATCTGCTGAGTCACAGTGGGGTCAATCCTCGACTGGCTATCCATGCC
CAGGATAAGTGATATTCNACATTGCACGCGGTTCAGCGAGTTCAATGCTT
CAATGGACTCGCTGGAACTCTATGATCTCTGATACGTGATCGAGGA
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