EY691732

Overview
NameEY691732
Unique NameEY691732
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length487
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY691732 vs. ExPASy Swiss-Prot
Match: ELOF1_ORYSJ (Transcription elongation factor 1 homolog OS=Oryza sativa subsp. japonica GN=Os07g0631100 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 5.045e-27
Identity = 53/60 (88.33%), Postives = 57/60 (95.00%), Query Frame = 1
Query:   13 FCNHGTSVECRIDMKNLIGEAICNICQESFSTTITALTEPIDIYSEWIDECERVNNLEDD 192
            FCNHG+SVECRIDMKNLIGEA C ICQE+FSTT+ ALTEPIDIYSEWIDECERVNN+EDD
Sbjct:   27 FCNHGSSVECRIDMKNLIGEASCRICQENFSTTVNALTEPIDIYSEWIDECERVNNVEDD 86          
BLAST of EY691732 vs. ExPASy Swiss-Prot
Match: ELOF1_ARATH (Transcription elongation factor 1 homolog OS=Arabidopsis thaliana GN=At5g46030 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 3.060e-24
Identity = 51/65 (78.46%), Postives = 56/65 (86.15%), Query Frame = 1
Query:   13 FCNHGTSVECRIDMKNLIGEAICNICQESFSTTITALTEPIDIYSEWIDECERVNNLEDDGAYEK 207
            FCNHG+SVEC IDMK+LIG+A C IC+ESFSTTITALTE IDIYSEWIDECERVN  EDD   E+
Sbjct:   27 FCNHGSSVECIIDMKHLIGKAACRICEESFSTTITALTEAIDIYSEWIDECERVNTAEDDVVQEE 91          
BLAST of EY691732 vs. ExPASy Swiss-Prot
Match: ELF1_YEAST (Transcription elongation factor 1 OS=Saccharomyces cerevisiae GN=ELF1 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.575e-12
Identity = 29/56 (51.79%), Postives = 38/56 (67.86%), Query Frame = 1
Query:   13 FCNHGTSVECRIDMKNLIGEAICNICQESFSTTITALTEPIDIYSEWIDECERVNN 180
            FCNH  SV C +D KN IG   C IC +SF T I +L++P+D+YS+W D  E VN+
Sbjct:   27 FCNHEKSVSCTLDKKNSIGTLSCKICGQSFQTRINSLSQPVDVYSDWFDAVEEVNS 82          
BLAST of EY691732 vs. ExPASy Swiss-Prot
Match: ELOF1_SCHPO (Transcription elongation factor 1 homolog OS=Schizosaccharomyces pombe GN=SPAC1B3.02c PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.742e-11
Identity = 31/70 (44.29%), Postives = 42/70 (60.00%), Query Frame = 1
Query:   13 FCNHGTSVECRIDMKNLIGEAICNICQESFSTTITALTEPIDIYSEWIDECE-------RVNNLEDDGAY 201
            FCNH  SV C +D ++ +G   C IC +S    ITAL+ PID+YS+WID C+        V+N+ D  AY
Sbjct:   27 FCNHEKSVSCSLDKQSGVGNLHCKICGQSHQCLITALSAPIDVYSDWIDACDAVANQAKEVDNINDQEAY 96          
BLAST of EY691732 vs. ExPASy Swiss-Prot
Match: ELOF1_CAEEL (Transcription elongation factor 1 homolog OS=Caenorhabditis elegans GN=Y54G11A.11 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.275e-11
Identity = 26/56 (46.43%), Postives = 36/56 (64.29%), Query Frame = 1
Query:   13 FCNHGTSVECRIDMKNLIGEAICNICQESFSTTITALTEPIDIYSEWIDECERVNN 180
            FCNH    E ++D +  +G   C +C E F T I  L+EPID+YS+W+D CE+ NN
Sbjct:   28 FCNHERVCEVKMDREKNVGYISCRVCSEDFQTNINYLSEPIDVYSDWVDACEQANN 83          
The following BLAST results are available for this feature:
BLAST of EY691732 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
ELOF1_ORYSJ5.045e-2788.33Transcription elongation factor 1 homolog OS=Oryza... [more]
ELOF1_ARATH3.060e-2478.46Transcription elongation factor 1 homolog OS=Arabi... [more]
ELF1_YEAST1.575e-1251.79Transcription elongation factor 1 OS=Saccharomyces... [more]
ELOF1_SCHPO1.742e-1144.29Transcription elongation factor 1 homolog OS=Schiz... [more]
ELOF1_CAEEL2.275e-1146.43Transcription elongation factor 1 homolog OS=Caeno... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C2-003-107-F05-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY691732 ID=EY691732; Name=EY691732; organism=Citrus sinensis; type=EST; length=487bp
CCACGCGTCCGCTTCTGTAACCATGGCACCAGTGTTGAGTGCCGCATTGA
TATGAAGAACTTGATTGGCGAAGCTATATGCAATATATGCCAAGAGAGCT
TCAGCACTACTATCACAGCTTTAACTGAACCAATAGACATATATAGTGAA
TGGATTGATGAATGTGAACGGGTTAACAACCTTGAAGATGACGGTGCTTA
TGAGAAAGCTTGATGTCTCCTGTACTAACGTCGGTGTTTGAATCTCTGTT
TATGAGAAAGCTTGATGTCTCCTGTACCAACATCGGTGTTTGAATCTCTA
GTGGATGTAATTATATCTGTTCACAGAGTAGTGCTCATTTACATCTGTAG
ACTATCTCAGGTTATGTTGCTAACTGATGTTGTGTAATTGGATGCTATTA
ATGCAGTTGTAATAATCATGGGTATTGTAAGTAATGCGGCCTGTTCTTTA
ATGTTGAATGCCGTTTTCGTGTAAAAAAAAAAAAAAA
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