EY690862 | Citrus Genome Database

Overview


Name	EY690862
Unique Name	EY690862
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	612

Libraries


Library Name	Type
Sweet orange bark, greenhouse plant	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY690862 vs. ExPASy Swiss-Prot
Match: TCPE_ARATH (T-complex protein 1 subunit epsilon OS=Arabidopsis thaliana GN=At1g24510 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.963e-55
Identity = 64/70 (91.43%), Postives = 66/70 (94.29%), Query Frame = 3

Query:  180 PIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVISPSEY 389
            PIETLSAVK+QQI+EN P  GIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVIS SEY
Sbjct:  466 PIETLSAVKSQQIKENIPFYGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVISNSEY 535

HSP 2 Score: 112.464 bits (280), Expect = 1.963e-55
Identity = 54/60 (90.00%), Postives = 59/60 (98.33%), Query Frame = 2

Query:    2 NLIRNHSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQP 181
            NLIRN SIVYGGGAAEIACS+AVDAAAD+YPGVEQYAIRAFA+ALD++PMALAENSGLQP
Sbjct:  407 NLIRNKSIVYGGGAAEIACSLAVDAAADKYPGVEQYAIRAFAEALDSVPMALAENSGLQP 466

[Close]

BLAST of EY690862 vs. ExPASy Swiss-Prot
Match: TCPE2_AVESA (T-complex protein 1 subunit epsilon OS=Avena sativa PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.048e-53
Identity = 59/70 (84.29%), Postives = 66/70 (94.29%), Query Frame = 3

Query:  180 PIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVISPSEY 389
            PI+TL+ VK+Q ++ENN  CGIDCNDVGTNDM+EQNVFETLIGKQQQILLATQVVKMILKIDDVI+PSEY
Sbjct:  466 PIDTLTVVKSQHVKENNSRCGIDCNDVGTNDMKEQNVFETLIGKQQQILLATQVVKMILKIDDVITPSEY 535

HSP 2 Score: 105.916 bits (263), Expect = 1.048e-53
Identity = 52/60 (86.67%), Postives = 58/60 (96.67%), Query Frame = 2

Query:    2 NLIRNHSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQP 181
            NLI N+SIVYGGG+AEI+CSIAV+AAADR+PGVEQYAIRAFADALDAIP+ALAENSGL P
Sbjct:  407 NLIINNSIVYGGGSAEISCSIAVEAAADRHPGVEQYAIRAFADALDAIPLALAENSGLPP 466

[Close]

BLAST of EY690862 vs. ExPASy Swiss-Prot
Match: TCPE1_AVESA (T-complex protein 1 subunit epsilon OS=Avena sativa PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.048e-53
Identity = 59/70 (84.29%), Postives = 66/70 (94.29%), Query Frame = 3

Query:  180 PIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVISPSEY 389
            PI+TL+ VK+Q ++ENN  CGIDCNDVGTNDM+EQNVFETLIGKQQQILLATQVVKMILKIDDVI+PSEY
Sbjct:  466 PIDTLTVVKSQHVKENNSRCGIDCNDVGTNDMKEQNVFETLIGKQQQILLATQVVKMILKIDDVITPSEY 535

HSP 2 Score: 105.916 bits (263), Expect = 1.048e-53
Identity = 52/60 (86.67%), Postives = 58/60 (96.67%), Query Frame = 2

Query:    2 NLIRNHSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQP 181
            NLI N+SIVYGGG+AEI+CSIAV+AAADR+PGVEQYAIRAFADALDAIP+ALAENSGL P
Sbjct:  407 NLIINNSIVYGGGSAEISCSIAVEAAADRHPGVEQYAIRAFADALDAIPLALAENSGLPP 466

[Close]

BLAST of EY690862 vs. ExPASy Swiss-Prot
Match: TCPE_MACFA (T-complex protein 1 subunit epsilon OS=Macaca fascicularis GN=CCT5 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.078e-38
Identity = 43/70 (61.43%), Postives = 57/70 (81.43%), Query Frame = 3

Query:  177 NPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVISPSE 386
            NPI+T++ V+ +Q++E NP  GIDC   GTNDM++Q+V ETLIGK+QQI LATQ+V+MILKIDD+  P E
Sbjct:  469 NPIQTMTEVRARQVKEMNPALGIDCLHKGTNDMKQQHVIETLIGKKQQISLATQMVRMILKIDDIRKPGE 538

HSP 2 Score: 87.8113 bits (216), Expect = 2.078e-38
Identity = 40/60 (66.67%), Postives = 52/60 (86.67%), Query Frame = 2

Query:    2 NLIRNHSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQP 181
            NLIR++ +VYGGGAAEI+C++AV   AD+ P +EQYA+RAFADAL+ IPMAL+ENSG+ P
Sbjct:  411 NLIRDNRVVYGGGAAEISCALAVSQEADKCPTLEQYAMRAFADALEVIPMALSENSGMNP 470

[Close]

BLAST of EY690862 vs. ExPASy Swiss-Prot
Match: TCPE_HUMAN (T-complex protein 1 subunit epsilon OS=Homo sapiens GN=CCT5 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.078e-38
Identity = 43/70 (61.43%), Postives = 57/70 (81.43%), Query Frame = 3

Query:  177 NPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVISPSE 386
            NPI+T++ V+ +Q++E NP  GIDC   GTNDM++Q+V ETLIGK+QQI LATQ+V+MILKIDD+  P E
Sbjct:  469 NPIQTMTEVRARQVKEMNPALGIDCLHKGTNDMKQQHVIETLIGKKQQISLATQMVRMILKIDDIRKPGE 538

HSP 2 Score: 87.8113 bits (216), Expect = 2.078e-38
Identity = 40/60 (66.67%), Postives = 52/60 (86.67%), Query Frame = 2

Query:    2 NLIRNHSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQP 181
            NLIR++ +VYGGGAAEI+C++AV   AD+ P +EQYA+RAFADAL+ IPMAL+ENSG+ P
Sbjct:  411 NLIRDNRVVYGGGAAEISCALAVSQEADKCPTLEQYAMRAFADALEVIPMALSENSGMNP 470

[Close]

BLAST of EY690862 vs. ExPASy Swiss-Prot
Match: TCPE_PONAB (T-complex protein 1 subunit epsilon OS=Pongo abelii GN=CCT5 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.799e-38
Identity = 43/70 (61.43%), Postives = 57/70 (81.43%), Query Frame = 3

Query:  177 NPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVISPSE 386
            NPI+T++ V+ +Q++E NP  GIDC   GTNDM++Q+V ETLIGK+QQI LATQ+V+MILKIDD+  P E
Sbjct:  469 NPIQTMTEVRARQVKEMNPALGIDCLHKGTNDMKQQHVIETLIGKKQQISLATQMVRMILKIDDIRKPGE 538

HSP 2 Score: 85.8853 bits (211), Expect = 7.799e-38
Identity = 39/60 (65.00%), Postives = 51/60 (85.00%), Query Frame = 2

Query:    2 NLIRNHSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQP 181
            NLIR++ +VYGGGAAE +C++AV   AD+ P +EQYA+RAFADAL+ IPMAL+ENSG+ P
Sbjct:  411 NLIRDNRVVYGGGAAETSCALAVSQEADKCPTLEQYAMRAFADALEVIPMALSENSGMNP 470

[Close]

BLAST of EY690862 vs. ExPASy Swiss-Prot
Match: TCPE_RAT (T-complex protein 1 subunit epsilon OS=Rattus norvegicus GN=Cct5 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.016e-37
Identity = 42/70 (60.00%), Postives = 57/70 (81.43%), Query Frame = 3

Query:  177 NPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVISPSE 386
            NPI+T++ V+ +Q++E+NP  GIDC   G+NDM+ Q+V ETLIGK+QQI LATQ+V+MILKIDD+  P E
Sbjct:  469 NPIQTMTEVRARQVKESNPALGIDCLHKGSNDMQYQHVIETLIGKKQQISLATQMVRMILKIDDIRKPGE 538

HSP 2 Score: 87.8113 bits (216), Expect = 1.016e-37
Identity = 40/60 (66.67%), Postives = 52/60 (86.67%), Query Frame = 2

Query:    2 NLIRNHSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQP 181
            NLIR++ +VYGGGAAEI+C++AV   AD+ P +EQYA+RAFADAL+ IPMAL+ENSG+ P
Sbjct:  411 NLIRDNRVVYGGGAAEISCALAVSQEADKCPTLEQYAMRAFADALEVIPMALSENSGMNP 470

[Close]

BLAST of EY690862 vs. ExPASy Swiss-Prot
Match: TCPE_MOUSE (T-complex protein 1 subunit epsilon OS=Mus musculus GN=Cct5 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.016e-37
Identity = 42/70 (60.00%), Postives = 57/70 (81.43%), Query Frame = 3

Query:  177 NPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVISPSE 386
            NPI+T++ V+ +Q++E+NP  GIDC   G+NDM+ Q+V ETLIGK+QQI LATQ+V+MILKIDD+  P E
Sbjct:  469 NPIQTMTEVRARQVKESNPALGIDCLHKGSNDMQYQHVIETLIGKKQQISLATQMVRMILKIDDIRKPGE 538

HSP 2 Score: 87.8113 bits (216), Expect = 1.016e-37
Identity = 40/60 (66.67%), Postives = 52/60 (86.67%), Query Frame = 2

Query:    2 NLIRNHSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQP 181
            NLIR++ +VYGGGAAEI+C++AV   AD+ P +EQYA+RAFADAL+ IPMAL+ENSG+ P
Sbjct:  411 NLIRDNRVVYGGGAAEISCALAVSQEADKCPTLEQYAMRAFADALEVIPMALSENSGMNP 470

[Close]

BLAST of EY690862 vs. ExPASy Swiss-Prot
Match: TCPE_DICDI (T-complex protein 1 subunit epsilon OS=Dictyostelium discoideum GN=cct5 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.986e-36
Identity = 44/64 (68.75%), Postives = 50/64 (78.12%), Query Frame = 3

Query:  183 IETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVI 374
            IE+LS VK  QI+E NP  GIDCN   TNDM+ Q+VF+TL GK QQ LLA QVVKMILKIDD+I
Sbjct:  467 IESLSTVKAMQIKEKNPRLGIDCNHRDTNDMKAQHVFDTLPGKTQQFLLANQVVKMILKIDDII 530

HSP 2 Score: 83.5741 bits (205), Expect = 6.986e-36
Identity = 37/58 (63.79%), Postives = 49/58 (84.48%), Query Frame = 2

Query:    2 NLIRNHSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGL 175
            NLIR++ ++YGGG++EI+C + + A AD    +EQYA+RAFADALDAIP+ALAENSGL
Sbjct:  407 NLIRDNRVIYGGGSSEISCGLKISAMADDIASIEQYAVRAFADALDAIPLALAENSGL 464

[Close]

BLAST of EY690862 vs. ExPASy Swiss-Prot
Match: TCPE_SCHPO (T-complex protein 1 subunit epsilon OS=Schizosaccharomyces pombe GN=cct5 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.969e-33
Identity = 39/58 (67.24%), Postives = 51/58 (87.93%), Query Frame = 2

Query:    2 NLIRNHSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGL 175
            NLIR++ +VYGGGAAEI+CS+AV   A++ PG++QY++ AFADALD IP+ALAENSGL
Sbjct:  413 NLIRDNRVVYGGGAAEISCSLAVTKEAEKIPGIDQYSMGAFADALDTIPLALAENSGL 470

HSP 2 Score: 76.6406 bits (187), Expect = 3.969e-33
Identity = 35/64 (54.69%), Postives = 50/64 (78.12%), Query Frame = 3

Query:  183 IETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVI 374
            IE L+AVK + ++EN    GIDC   G+NDMR+Q V + LIGK+QQ+LLATQ+ +M+LK++D+I
Sbjct:  473 IEALTAVKARHVKENKAYLGIDCLQTGSNDMRKQFVIDPLIGKKQQLLLATQLCRMVLKVNDII 536

The following BLAST results are available for this feature:

BLAST of EY690862 vs. ExPASy Swiss-Prot

BLAST of EY690862 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46


Match Name	E-value	Identity	Description
TCPE_ARATH	1.963e-55	91.43	T-complex protein 1 subunit epsilon OS=Arabidopsis...	[more]
TCPE2_AVESA	1.048e-53	84.29	T-complex protein 1 subunit epsilon OS=Avena sativ...	[more]
TCPE1_AVESA	1.048e-53	84.29	T-complex protein 1 subunit epsilon OS=Avena sativ...	[more]
TCPE_MACFA	2.078e-38	61.43	T-complex protein 1 subunit epsilon OS=Macaca fasc...	[more]
TCPE_HUMAN	2.078e-38	61.43	T-complex protein 1 subunit epsilon OS=Homo sapien...	[more]
TCPE_PONAB	7.799e-38	61.43	T-complex protein 1 subunit epsilon OS=Pongo abeli...	[more]
TCPE_RAT	1.016e-37	60.00	T-complex protein 1 subunit epsilon OS=Rattus norv...	[more]
TCPE_MOUSE	1.016e-37	60.00	T-complex protein 1 subunit epsilon OS=Mus musculu...	[more]
TCPE_DICDI	6.986e-36	68.75	T-complex protein 1 subunit epsilon OS=Dictyosteli...	[more]
TCPE_SCHPO	3.969e-33	67.24	T-complex protein 1 subunit epsilon OS=Schizosacch...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C2-003-092-C04-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY690862 ID=EY690862; Name=EY690862; organism=Citrus sinensis; type=EST; length=612bp
GAATCTGATTCGCAACCATTCTATTGTGTATGGCGGGGGTGCAGCTGAGA
TAGCTTGCTCAATTGCTGTAGATGCAGCTGCAGATAGATATCCGGGAGTT
GAACAGTATGCTATCAGGGCATTTGCAGATGCGTTGGATGCTATCCCGAT
GGCACTTGCAGAAAATAGTGGTCTCCAACCCTATTGAGACGCTATCGGCT
GTGAAAAATCAGCAAATTAGGGAGAATAATCCAAACTGCGGAATAGACTG
CAATGATGTTGGAACCAATGACATGCGTGAGCAAAATGTCTTTGAGACTT
TGATTGGGAAGCAGCAGCAGATTCTTCTCGCAACACAAGTTGTGAAGATG
ATTTTGAAAATTGATGATGTCATTTCCCCCTCTGAATATTGATTCATTCT
AAGGTCTAAGTTTCTGTTTGATTTTGCTTCACCAAGAATGCATTTCATGT
ATTTTGTTGGCTTGGTATCGACCCTGTCCACTTGATAACGACTGACTTTA
AAGGTTATGGGTTGGTTTTTGTTAAAATTGTACCGTGAATTACCTTTTTC
TGGTAGTGAGAATTGATGATTTTGCTTTGTTTACAAAAAAAAAAAAAAAA
AAAAAAAAAAAG