EY688798

Overview
NameEY688798
Unique NameEY688798
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length869
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY688798 vs. ExPASy Swiss-Prot
Match: PARN_ARATH (Poly(A)-specific ribonuclease PARN OS=Arabidopsis thaliana GN=PARN PE=1 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 4.559e-18
Identity = 53/130 (40.77%), Postives = 74/130 (56.92%), Query Frame = 3 
Query:    3 EMVSKFLDLKGSLDRNNDPISVLHPLAKLLEGGNTCAASYETYKEICSSTVSKVLFADQAKAVGIKWKTKLVESSDKTKEHESLRKVKAVNSDPSCGDRTKNNNFDDVSHDSSYTQLSSDEIIDSFYPRR 392
            E+V  FL LK  L+ ++ P+SVLHPL+K+LEGGNT AA YE YKEICSS VS+V+F+DQA+ VG+K +T+                      +  C   T+  N   V+H +S       ++ID+F   R
Sbjct:  579 ELVWDFLALKRQLESSDGPVSVLHPLSKILEGGNTGAADYEAYKEICSSHVSEVMFSDQAETVGVKSRTR---------------------PNAQCETETREENTVTVTHKAS-------DLIDAFLANR 680
The following BLAST results are available for this feature:
BLAST of EY688798 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PARN_ARATH4.559e-1840.77Poly(A)-specific ribonuclease PARN OS=Arabidopsis ... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C2-003-064-G06-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY688798 ID=EY688798; Name=EY688798; organism=Citrus sinensis; type=EST; length=869bp
CAGAAATGGTTTCCAAATTTCTTGATTTGAAGGGAAGCTTAGATAGAAAT
AACGATCCAATCTCGGTTTTGCATCCTCTTGCAAAATTGCTCGAAGGTGG
AAATACCTGTGCTGCTAGCTATGAAACTTACAAAGAAATATGTAGTTCAA
CTGTCTCAAAAGTCTTATTTGCGGATCAAGCAAAGGCAGTTGGTATCAAA
TGGAAGACCAAGTTGGTGGAATCCTCGGATAAGACCAAAGAACATGAAAG
TCTCCGTAAAGTAAAAGCAGTGAATTCTGATCCAAGTTGTGGCGATAGAA
CTAAGAATAACAATTTTGATGATGTATCACATGATTCCTCATACACCCAA
TTATCATCTGATGAGATCATTGATTCCTTTTATCCGCGCCGAGGCAAAGC
AGATTTGCAGCACTAACTTTTGACTTGGAATTTAAGAAAAATTATGTCTT
CCTTTACTATCAGAAGCTATCACACCAACCAACCTACCCCTGCCACCCCC
CCATCCCACACGCCCCGACCGCCACCGACACACACACCCCCCCTTGCGCC
AGGCACCCAGAGCACAAACACAAATAACCGCAGCCGACGCCACACCACAA
CCGAGCACCGCCGAGCCGCAACAACCAACCACGCGACACGGCAAAAACAC
GCAGCGACATAGACAAGCCGCTAAGACCAAACGTAAAGCAGCCCGCGACA
CCCCAAAACCAAAAACCAACCAGAGCGCAGCAGGCCACCAACGGCCGATA
CCAACCCAACACCAGACGCCAACACACAAGGGCTACCAAAAAGCCAAAAA
AACAACACCAAAGACACACCAACCGACAAAGAAAGACCACCCAAAAACCG
GACCCAACACGAGAAGGAC
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