EY711690

Overview
NameEY711690
Unique NameEY711690
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length923
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY711690 vs. ExPASy Swiss-Prot
Match: NHX6_ARATH (Sodium/hydrogen exchanger 6 OS=Arabidopsis thaliana GN=NHX6 PE=1 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 1.161e-36
Identity = 60/76 (78.95%), Postives = 65/76 (85.53%), Query Frame = 3
Query:  381 QISPA-NDPRGSPAKEQQVTGVGIILQITMLVLSFVLGHVLRRHKFYYLLEAGTSLLIGLIVGALANISNTETNIR 605
            QISPA +DP+G   K+QQ  GVGI+LQI MLVLSFVLGHVLRRHKFYYL EA  SLLIGLIVG LANISNTET+IR
Sbjct:    6 QISPAIHDPQGQE-KQQQAAGVGILLQIMMLVLSFVLGHVLRRHKFYYLPEASASLLIGLIVGGLANISNTETSIR 80          

HSP 2 Score: 65.0846 bits (157), Expect = 1.161e-36
Identity = 50/108 (46.30%), Postives = 58/108 (53.70%), Query Frame = 2
Query:  605 KAFIFNFGAIVTFAIFGTVLASMVTGIPVFRAG--------SFXYWTWCRSCIS**EKV--------VPSD----ALVFGEICFDDAMAISLYRTCP**ESCSSGQNF 868
            K F  NFGAIVTF++ GT +ASMVTG+ V+  G         F       S IS  + V        + SD    ALVFGE   +DAMAISLYRT     S SSGQNF
Sbjct:  109 KPFFSNFGAIVTFSVLGTFVASMVTGLLVYLGGVMFLMYRLPFVECLMFGSLISATDPVTVLSIFQELGSDVNLYALVFGESVLNDAMAISLYRTMSLVRSHSSGQNF 216          
BLAST of EY711690 vs. ExPASy Swiss-Prot
Match: NHX5_ARATH (Sodium/hydrogen exchanger 5 OS=Arabidopsis thaliana GN=NHX5 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.871e-31
Identity = 55/75 (73.33%), Postives = 63/75 (84.00%), Query Frame = 3
Query:  384 ISPA-NDPRGSPAKEQQVTGVGIILQITMLVLSFVLGHVLRRHKFYYLLEAGTSLLIGLIVGALANISNTETNIR 605
            ISP  +DP+G   K+QQ  GVGI+LQI MLVLSFVLGHVLRRH+F+YL EA  SLLIGLIVG LANIS+TET+IR
Sbjct:    2 ISPVEHDPQGQ-VKQQQAAGVGILLQIMMLVLSFVLGHVLRRHRFHYLPEASGSLLIGLIVGILANISDTETSIR 75          

HSP 2 Score: 55.4546 bits (132), Expect = 4.871e-31
Identity = 41/95 (43.16%), Postives = 48/95 (50.53%), Query Frame = 2
Query:  605 KAFIFNFGAIVTFAIFGTVLASMVTGIPVFRAGS--FXYWTWCRSCIS**EKVVPSD------------------ALVFGEICFDDAMAISLYRT 829
            K F  NFGAIVTFAI GT +AS+VTG  V+  GS    Y      C+     +  +D                  ALVFGE   +DAMAISLYRT
Sbjct:  104 KPFFSNFGAIVTFAIIGTFVASVVTGGLVYLGGSMYLMYKLPFVECLMFGALISATDPVTVLSIFQDVGTDVNLYALVFGESVLNDAMAISLYRT 198          
The following BLAST results are available for this feature:
BLAST of EY711690 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
NHX6_ARATH1.161e-3678.95Sodium/hydrogen exchanger 6 OS=Arabidopsis thalian... [more]
NHX5_ARATH4.871e-3173.33Sodium/hydrogen exchanger 5 OS=Arabidopsis thalian... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-702-010-F05-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711690 ID=EY711690; Name=EY711690; organism=Citrus sinensis; type=EST; length=923bp
CCACGCGTCCGCCCACGCGTCCGTTCAATCCTCCACCACCGAAGTCGTTA
CGGCTCACAAGAGAAGAAACGTGACTGATGCTTGGTTAAATTTTCTATTT
ATTTTCAGAAACTATTTTCTTTCTCCCTTTTCGGTTGGTTGTAACGCTGA
TGTTCTTTGGTTACTTGAGAGTAACAAATTGATTGGATGAATCAAACTTG
GGAATTGGCCTTCATGATTGTTAAGGTTATTAATTATATGTTTTTCGATA
CATAAATAGTCAAGCGATAGGTATTGGTAAATTATAGGGCTCATTGTGAA
GGAGAAAACAACAACAATTGAAATTGAATTTTAGGGCTCAAAAGTTGGGA
CATCGGGGTATAATGACCGGAGAGGCATTTCAGATATCTCCGGCGAACGA
TCCTCGTGGAAGTCCCGCAAAGGAGCAGCAAGTCACTGGCGTTGGCATAA
TCCTCCAGATCACGATGCTTGTACTCTCTTTCGTCCTCGGCCACGTCCTT
CGTCGTCACAAATTCTATTATCTTCTGGAAGCCGGCACTTCTCTTCTCAT
AGGTTTAATTGTTGGTGCACTGGCTAATATCTCTAATACTGAAACAAATA
TTAGAAAGCTTTTATTTTTAACTTTGGAGCCATTGTGACATTTGCAATTT
TTGGAACCGTTTTAGCTTCAATGGTCACGGGTATACCAGTTTTCAGAGCT
GGATCCTTCTGNTACTGGACTTGGTGTAGAAGCTGTATATCGTGATAAGA
AAAAGTAGTCCCATCTGATGCATTGGTTTTTGGGGAAATCTGTTTTGACG
ATGCAATGGCGATATCCTTGTACCGGACATGTCCCTAGTGAGAATCATGC
TCATCTGGGCAGAATTTTTCTGGTGATGTCAGGTTCNTGAGACTTTTGNT
GCTCATGNCTGCANATGCCNGAT
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