EY711656

Overview
NameEY711656
Unique NameEY711656
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length849
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY711656 vs. ExPASy Swiss-Prot
Match: MED31_ARATH (Mediator of RNA polymerase II transcription subunit 31 OS=Arabidopsis thaliana GN=At5g19910 PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.599e-36
Identity = 78/122 (63.93%), Postives = 81/122 (66.39%), Query Frame = 3
Query:   12 GYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHPANKELAHRQQFFFWKNYRNNRLKHILPRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGPALSPMQYGIPPGSALMKND 377
            GYLKYLQYWQRPEYIKFIMYPHCLYFLELLQN NFR AMAHPANKELAHRQQF++WKNYRNNRLKHILPR                                PALSPMQY     + L KND
Sbjct:   64 GYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNPNFRTAMAHPANKELAHRQQFYYWKNYRNNRLKHILPRPLPEPVPPQPPVAPSTSLPPAPSATAAL---SPALSPMQY----NNMLSKND 178          
BLAST of EY711656 vs. ExPASy Swiss-Prot
Match: MED31_DICDI (Putative mediator of RNA polymerase II transcription subunit 31 OS=Dictyostelium discoideum GN=med31 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.400e-16
Identity = 35/63 (55.56%), Postives = 45/63 (71.43%), Query Frame = 3
Query:   15 YLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHPANKELAHRQQFFFWKNYRNNRL 203
            YL YLQYW++PEY KFI+YP  LYFL+LLQ   FR  + H  + +  H QQF+ W+ YRNNR+
Sbjct:   89 YLVYLQYWKKPEYAKFIVYPQSLYFLDLLQEERFRQELNHSQSTDFIHEQQFYHWQYYRNNRM 151          
BLAST of EY711656 vs. ExPASy Swiss-Prot
Match: MED31_DANRE (Mediator of RNA polymerase II transcription subunit 31 OS=Danio rerio GN=med31 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.363e-11
Identity = 29/64 (45.31%), Postives = 39/64 (60.94%), Query Frame = 3
Query:   15 YLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHPANKELAHRQQFFFWKNYRNNRLK 206
            YLKYL YW+ PEY KF+ YPHCL+ LELLQ  +FR  + +    +    QQ   W++Y   R +
Sbjct:   48 YLKYLLYWKEPEYAKFLKYPHCLHMLELLQYEHFRKELVNAQCAKFIDEQQILHWQHYSRKRTR 111          
BLAST of EY711656 vs. ExPASy Swiss-Prot
Match: MED31_DROME (Mediator of RNA polymerase II transcription subunit 31 OS=Drosophila melanogaster GN=MED31 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.780e-11
Identity = 30/66 (45.45%), Postives = 42/66 (63.64%), Query Frame = 3
Query:   15 YLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHPANKELAHRQQFFFWKNYRNNRLKHI 212
            YLKYLQYW+ P+Y K++MYP CLYFL+LLQ  +FR  + +    +    Q    W++Y   R+K I
Sbjct:   55 YLKYLQYWKEPDYAKYLMYPMCLYFLDLLQYEHFRREIVNSQCCKFIDDQAILQWQHYTRKRIKLI 120          
BLAST of EY711656 vs. ExPASy Swiss-Prot
Match: MED31_TAESO (Mediator of RNA polymerase II transcription subunit 31 OS=Taenia solium GN=Ts24233 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.036e-11
Identity = 29/66 (43.94%), Postives = 39/66 (59.09%), Query Frame = 3
Query:   15 YLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHPANKELAHRQQFFFWKNYRNNRLKHI 212
            YL YLQYW+ P Y +FI YP CL+ L+LLQ+ +FR  +AH +       Q    WKNY   R + +
Sbjct:   64 YLSYLQYWKSPSYSRFITYPFCLHMLDLLQSPDFRREVAHESVTRFIDDQMLLHWKNYLRKRAEMV 129          
The following BLAST results are available for this feature:
BLAST of EY711656 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
MED31_ARATH1.599e-3663.93Mediator of RNA polymerase II transcription subuni... [more]
MED31_DICDI2.400e-1655.56Putative mediator of RNA polymerase II transcripti... [more]
MED31_DANRE1.363e-1145.31Mediator of RNA polymerase II transcription subuni... [more]
MED31_DROME1.780e-1145.45Mediator of RNA polymerase II transcription subuni... [more]
MED31_TAESO3.036e-1143.94Mediator of RNA polymerase II transcription subuni... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-702-010-C06-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711656 ID=EY711656; Name=EY711656; organism=Citrus sinensis; type=EST; length=849bp
CCACGCGTCCGGGTTACTTGAAATATCTTCAGTACTGGCAACGGCCGGAG
TACATTAAATTTATAATGTATCCACATTGCCTCTATTTTCTTGAACTTCT
ACAAAATGCAAACTTCCGCAATGCTATGGCACATCCTGCCAACAAGGAGT
TGGCACATAGGCAGCAATTCTTTTTCTGGAAGAACTATAGAAACAATCGA
CTAAAGCACATTTTACCAAGGCCTCTTCCTGAACCTGCTGAGGCTCCACC
ACCTGCTGCTGCTCCACCTCTGCCACCTGCACCACCTGTGCCGACTCCTG
TGACAGCTGCTTCAGGGCCAGCCCTTTCTCCTATGCAGTATGGAATTCCC
CCAGGATCAGCTCTGATGAAAAATGATATGAGGAGTAGCAGCATTGATCG
AAGAAAAAGGAAGAAAGATGGTTGAATTGGCATAACATTCCTGTGCCTTA
AACTTATGAGAAATGCATATTGATGATGCAAGGATTATAAGGGTTATTGA
ATCAGAGCATATGAGTGGAGATCATTCTGCAGGCCTATCATCTATTTATC
AAGGGGCTGATTTCATTTTGGTCGGTGGGAGGCTCATAATCATCACATTT
TTAACACCCCCAAATTCTTAATTTCTCTCAAGGTCAGCGAATCGTTAATT
TCTGGTCAGCGCTTCCAATGTTGGGCATCAGTAGTTTTTATTTTGTTTTA
TGGATATCAAGAAATACATACATTGAATGTGATGTGCTCTCTCACCCCTC
NTGNATNGNNATTATGTAAACTTGACCATTGNCGTCAAATTATCTCCCAC
TGTCAANGNNTCAAATCGAATTGATTAGACTATCGAAAAAAAAAAAAAA
back to top