EY711582

Overview
NameEY711582
Unique NameEY711582
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length933
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY711582 vs. ExPASy Swiss-Prot
Match: CI041_RAT (UPF0586 protein C9orf41 homolog OS=Rattus norvegicus PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 9.837e-30
Identity = 63/130 (48.46%), Postives = 84/130 (64.62%), Query Frame = 3
Query:   12 GKTERDQCYKPILEELDALFPN-RSKESPPACLVPGAGLGRLALEISRLGFISQGNEFSYYMMICSSFILNHTQTAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSD 398
            GK ERD CYKPI++E+   FP  R   S    LVPGAGLGRLA EI+ LG+  QGNE+S++M+  S+F+LN      ++ +YPWIH   N+   +DQ+RP+  PD+ P S      FSM  GDF E+YS+
Sbjct:  164 GKAERDACYKPIIKEIIKNFPKERWDPSKVNILVPGAGLGRLAWEIAMLGYACQGNEWSFFMLFSSNFVLNRCSEVDKYKLYPWIHQFSNNRRSADQIRPIFFPDVDPHSLPPGSNFSMTAGDFQEIYSE 293          
BLAST of EY711582 vs. ExPASy Swiss-Prot
Match: CI041_MOUSE (UPF0586 protein C9orf41 homolog OS=Mus musculus PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.285e-29
Identity = 62/130 (47.69%), Postives = 84/130 (64.62%), Query Frame = 3
Query:   12 GKTERDQCYKPILEELDALFPN-RSKESPPACLVPGAGLGRLALEISRLGFISQGNEFSYYMMICSSFILNHTQTAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSD 398
            GK ERD CYKPI++E+   FP  R   S    LVPGAGLGRLA E++ LG+  QGNE+S++M+  S+F+LN      ++ +YPWIH   N+   +DQ+RP+  PD+ P S      FSM  GDF E+YS+
Sbjct:  164 GKAERDACYKPIIKEIIKNFPKERWDPSKVNILVPGAGLGRLAWEVAMLGYACQGNEWSFFMLFSSNFVLNRCSEINKYKLYPWIHQFSNNRRSADQIRPILFPDVDPHSLPPGSNFSMTAGDFQEIYSE 293          
BLAST of EY711582 vs. ExPASy Swiss-Prot
Match: CI041_HUMAN (UPF0586 protein C9orf41 OS=Homo sapiens GN=C9orf41 PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.738e-29
Identity = 62/130 (47.69%), Postives = 84/130 (64.62%), Query Frame = 3
Query:   12 GKTERDQCYKPILEELDALFPN-RSKESPPACLVPGAGLGRLALEISRLGFISQGNEFSYYMMICSSFILNHTQTAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSD 398
            GK ERD CY+PI++E+   FP  R   S    LVPGAGLGRLA EI+ LG+  QGNE+S++M+  S+F+LN      ++ +YPWIH   N+   +DQ+RP+  PD+ P S      FSM  GDF E+YS+
Sbjct:  173 GKAERDACYQPIIKEILKNFPKERWDPSKVNILVPGAGLGRLAWEIAMLGYACQGNEWSFFMLFSSNFVLNRCSEINKYKLYPWIHQFSNNRRSADQIRPIFFPDVDPHSLPPGSNFSMTAGDFQEIYSE 302          
BLAST of EY711582 vs. ExPASy Swiss-Prot
Match: U586_DROME (UPF0586 protein CG11596 OS=Drosophila melanogaster GN=CG11596 PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.920e-25
Identity = 57/132 (43.18%), Postives = 80/132 (60.61%), Query Frame = 3
Query:   12 GKTERDQCYKPILEELDALFPNRSKESPPA-CLVPGAGLGRLALEISRLGFISQGNEFSYYMMICSSFILNHTQTAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPS 404
            G  ER+Q YKPI++ + A F +   E      LVPGAGLGRL  E++ LG+  +GNEFSY+M+I S+F+LN      ++ +YPW+H   N+L   DQ+ PV  PD+ P        F +  GDF+EVY  P+
Sbjct:  143 GALEREQSYKPIIDSIVAYFKHSDFELKDIKILVPGAGLGRLTYELACLGYSCEGNEFSYFMLIASNFVLNLCDNENKYVLYPWVHQYVNNLRREDQVAPVRFPDVCPLKNPPKGHFEIAAGDFLEVYKTPN 274          
BLAST of EY711582 vs. ExPASy Swiss-Prot
Match: YOI7_SCHPO (UPF0586 protein C1778.07 OS=Schizosaccharomyces pombe GN=SPBC1778.07 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.772e-24
Identity = 60/126 (47.62%), Postives = 84/126 (66.67%), Query Frame = 3
Query:   21 ERDQCYKPILEELDALFPNRSKE-SPPACLVPGAGLGRLALEISRLGFISQGNEFSYYMMICSSFILNHTQTAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPAS-AGITEGFSMCGGDFVEVY 392
            ER   Y P +EEL++LFP+ S + S    LVPG+GLGRLA +I+  GF  QGNEFSY+M++ S FILN  +   ++ +YP+IHS  N +   DQ+R ++IPD  P+     ++ FSM  GDF+EVY
Sbjct:  122 ERRTTYAPFIEELNSLFPSDSIDRSKIRVLVPGSGLGRLAFDIAVEGFACQGNEFSYFMLLTSHFILNCVKQENQFLVYPYIHSFSNHVMRDDQVRSLNIPDAVPSQYLRNSQNFSMAAGDFLEVY 247          
BLAST of EY711582 vs. ExPASy Swiss-Prot
Match: U586_DICDI (UPF0586 protein OS=Dictyostelium discoideum GN=DDB_G0282239 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 6.391e-21
Identity = 59/132 (44.70%), Postives = 81/132 (61.36%), Query Frame = 3
Query:   12 GKTERDQCYKPILEELDALFPNR--SKESPPACLVPGAGLGRLALEISRLGFISQGNEFSYYMMICSSFILNHTQTAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI-----HPASAGITEGFSMCGGDFVE 386
            GK ERDQ ++PI ++L  ++ +    + S      PGAGLGRL LEI+ LGF SQG E+S+ M+I S+F+LN  +   E+ I+P+IH   N L D DQLR V+IPD+      P +    E FSM  GDF +
Sbjct:  224 GKLERDQAFEPIKQQLLEIYGHIPFQERSKIRVYSPGAGLGRLCLEIASLGFSSQGIEYSFMMLIVSNFMLNKVEKINEFKIHPYIHQTVNVLRDIDQLRTVTIPDVLSSELLPKNNPALE-FSMSAGDFTK 354          
BLAST of EY711582 vs. ExPASy Swiss-Prot
Match: YNJ2_YEAST (UPF0586 protein YNL092W OS=Saccharomyces cerevisiae GN=YNL092W PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.379e-15
Identity = 45/112 (40.18%), Postives = 65/112 (58.04%), Query Frame = 3
Query:   66 LFPNRSKESPPAC--LVPGAGLGRLALEISRLGFISQGNEFSYYMMICSSFILNHTQTAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEG-FSMCGGDFVEVY 392
            L P     SPP    L+PG G GRL +++SR+G+  +GNEFSY+M++ S ++LN      +  IYP+IH   +     DQL P+ +PDI   S+    G  S+C G FV+ Y
Sbjct:  128 LVPFLKTLSPPKADILIPGCGTGRLLVDLSRMGYNCEGNEFSYHMLLVSQYMLNAGLLQNQIIIYPFIHCFSHWKKIEDQLSPIKVPDIEAWSSNKGMGSMSICAGSFVDCY 239          
The following BLAST results are available for this feature:
BLAST of EY711582 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
CI041_RAT9.837e-3048.46UPF0586 protein C9orf41 homolog OS=Rattus norvegic... [more]
CI041_MOUSE1.285e-2947.69UPF0586 protein C9orf41 homolog OS=Mus musculus PE... [more]
CI041_HUMAN3.738e-2947.69UPF0586 protein C9orf41 OS=Homo sapiens GN=C9orf41... [more]
U586_DROME1.920e-2543.18UPF0586 protein CG11596 OS=Drosophila melanogaster... [more]
YOI7_SCHPO2.772e-2447.62UPF0586 protein C1778.07 OS=Schizosaccharomyces po... [more]
U586_DICDI6.391e-2144.70UPF0586 protein OS=Dictyostelium discoideum GN=DDB... [more]
YNJ2_YEAST1.379e-1540.18UPF0586 protein YNL092W OS=Saccharomyces cerevisia... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-702-009-D03-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711582 ID=EY711582; Name=EY711582; organism=Citrus sinensis; type=EST; length=933bp
CCACGCGTCCGGGAAAAACAGAACGTGATCAATGCTACAAGCCTATTCTT
GAAGAACTTGACGCTCTATTCCCAAATCGATCCAAGGAGAGCCCTCCTGC
CTGTTTAGTCCCTGGTGCTGGTCTTGGGCGGCTGGCTTTGGAGATCTCCC
GTCTAGGTTTTATAAGCCAGGGAAACGAATTTTCCTACTACATGATGATA
TGCTCAAGTTTTATTCTTAATCATACTCAAACTGCTGGGGAGTGGAATAT
ATATCCTTGGATCCACAGCAATTGCAATTCACTTTCTGACAGTGACCAAC
TTCGTCCTGTTTCAATCCCAGACATTCATCCGGCAAGTGCTGGGATTACT
GAAGGTTTTTCTATGTGTGGTGGTGACTTTGTTGAAGTCTACAGTGACCC
AAGCCAAGTAGGTAGGAAACTAAAAGACTGCTTTCTCATATATCTTATTT
CTTAATATTGGATATATATTGTTTTTGATATGGATATTAATAACAATAAA
ATTAAGGGGACATTGAGTCTCAACGTGAGTCCCAACTATTATGTGTCATT
CATCTATTGGATAGTAATTTTATAACTGGCAAAATTAATACTCTANCATG
GATGAATGTCACATCAATTGGGATTNCAAGTNGGACTCAACTATTGGGAT
CTCTAGCATTTACTCATTNAATATATTNNATGATGCTATACCAGTCTCAT
GGTAGCTCCTGCAATCATTATCTATAGACTTGNTGAGCATTACAGATTTC
CCAGTTTTGAATAGTTTATCTGCATTTTCTGCCGTGGGATCCCTCATCAT
AAGCTTGGATGAAGTGTTTGAACCTAGAGTATCTACCTTTGCTTCTTATC
TATTAGGAGATGAAGAGGAGATGTATCAAATGTGATCTGTGCCAATTTAN
GGTGGACATAAAATCACTTTGCTGCTCCTAAAA
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