EY711460 | Citrus Genome Database

Overview


Name	EY711460
Unique Name	EY711460
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	962

Libraries


Library Name	Type
Sweet orange fruit, development stadium (3 of 6)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig7289	contig	Csv1_Contig7289:1098..2057.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of EY711460 vs. ExPASy Swiss-Prot
Match: YCF72_ORYSJ (Uncharacterized protein ycf72 OS=Oryza sativa subsp. japonica GN=ycf72-1 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.375e-42
Identity = 57/70 (81.43%), Postives = 60/70 (85.71%), Query Frame = -3

Query:  514 PLVRTVAEQFLDIKRTSPEGNFNVADVPSFAISFATAPAALANCPPFPSVISMLCMAVRKGISVEVDSSF 723
            P   TVA+QF D KRTSP+GN  VAD+PSFAISFATAPAALANCPP P VISMLCMAV KGISVEVDSSF
Sbjct:   46 PTCPTVAKQFWDTKRTSPDGNLKVADLPSFAISFATAPAALANCPPLPRVISMLCMAVPKGISVEVDSSF 115

HSP 2 Score: 61.2326 bits (147), Expect = 5.375e-42
Identity = 31/45 (68.89%), Postives = 32/45 (71.11%), Query Frame = -1

Query:  723 GAF-LPHPNGVVYRVITTPLTTGRFPSHHLDRALPKLFWFAPTIP 854
            GAF  P P G     ITTPLTTGR PS HLD ALPKLFWF PT+P
Sbjct:    2 GAFPSPPPWGWSTGFITTPLTTGRLPSQHLDPALPKLFWFTPTLP 46

HSP 3 Score: 38.1206 bits (87), Expect = 5.375e-42
Identity = 16/21 (76.19%), Postives = 19/21 (90.48%), Query Frame = -2

Query:  449 INQNPFPNRTSFFQSIRLSGC 511
            +++NPFPN TSFFQSIRLS C
Sbjct:  116 LSKNPFPNCTSFFQSIRLSRC 136

[Close]

BLAST of EY711460 vs. ExPASy Swiss-Prot
Match: YCF72_ORYSI (Uncharacterized protein ycf72 OS=Oryza sativa subsp. indica GN=ycf72-1 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.375e-42
Identity = 57/70 (81.43%), Postives = 60/70 (85.71%), Query Frame = -3

Query:  514 PLVRTVAEQFLDIKRTSPEGNFNVADVPSFAISFATAPAALANCPPFPSVISMLCMAVRKGISVEVDSSF 723
            P   TVA+QF D KRTSP+GN  VAD+PSFAISFATAPAALANCPP P VISMLCMAV KGISVEVDSSF
Sbjct:   46 PTCPTVAKQFWDTKRTSPDGNLKVADLPSFAISFATAPAALANCPPLPRVISMLCMAVPKGISVEVDSSF 115

HSP 2 Score: 61.2326 bits (147), Expect = 5.375e-42
Identity = 31/45 (68.89%), Postives = 32/45 (71.11%), Query Frame = -1

Query:  723 GAF-LPHPNGVVYRVITTPLTTGRFPSHHLDRALPKLFWFAPTIP 854
            GAF  P P G     ITTPLTTGR PS HLD ALPKLFWF PT+P
Sbjct:    2 GAFPSPPPWGWSTGFITTPLTTGRLPSQHLDPALPKLFWFTPTLP 46

HSP 3 Score: 38.1206 bits (87), Expect = 5.375e-42
Identity = 16/21 (76.19%), Postives = 19/21 (90.48%), Query Frame = -2

Query:  449 INQNPFPNRTSFFQSIRLSGC 511
            +++NPFPN TSFFQSIRLS C
Sbjct:  116 LSKNPFPNCTSFFQSIRLSRC 136

[Close]

BLAST of EY711460 vs. ExPASy Swiss-Prot
Match: YCF72_ORYSA (Uncharacterized protein ycf72 OS=Oryza sativa GN=ycf72-1 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.375e-42
Identity = 57/70 (81.43%), Postives = 60/70 (85.71%), Query Frame = -3

Query:  514 PLVRTVAEQFLDIKRTSPEGNFNVADVPSFAISFATAPAALANCPPFPSVISMLCMAVRKGISVEVDSSF 723
            P   TVA+QF D KRTSP+GN  VAD+PSFAISFATAPAALANCPP P VISMLCMAV KGISVEVDSSF
Sbjct:   46 PTCPTVAKQFWDTKRTSPDGNLKVADLPSFAISFATAPAALANCPPLPRVISMLCMAVPKGISVEVDSSF 115

HSP 2 Score: 61.2326 bits (147), Expect = 5.375e-42
Identity = 31/45 (68.89%), Postives = 32/45 (71.11%), Query Frame = -1

Query:  723 GAF-LPHPNGVVYRVITTPLTTGRFPSHHLDRALPKLFWFAPTIP 854
            GAF  P P G     ITTPLTTGR PS HLD ALPKLFWF PT+P
Sbjct:    2 GAFPSPPPWGWSTGFITTPLTTGRLPSQHLDPALPKLFWFTPTLP 46

HSP 3 Score: 38.1206 bits (87), Expect = 5.375e-42
Identity = 16/21 (76.19%), Postives = 19/21 (90.48%), Query Frame = -2

Query:  449 INQNPFPNRTSFFQSIRLSGC 511
            +++NPFPN TSFFQSIRLS C
Sbjct:  116 LSKNPFPNCTSFFQSIRLSRC 136

[Close]

BLAST of EY711460 vs. ExPASy Swiss-Prot
Match: YCF72_ORYNI (Uncharacterized protein ycf72 OS=Oryza nivara GN=ycf72-1 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.375e-42
Identity = 57/70 (81.43%), Postives = 60/70 (85.71%), Query Frame = -3

Query:  514 PLVRTVAEQFLDIKRTSPEGNFNVADVPSFAISFATAPAALANCPPFPSVISMLCMAVRKGISVEVDSSF 723
            P   TVA+QF D KRTSP+GN  VAD+PSFAISFATAPAALANCPP P VISMLCMAV KGISVEVDSSF
Sbjct:   46 PTCPTVAKQFWDTKRTSPDGNLKVADLPSFAISFATAPAALANCPPLPRVISMLCMAVPKGISVEVDSSF 115

HSP 2 Score: 61.2326 bits (147), Expect = 5.375e-42
Identity = 31/45 (68.89%), Postives = 32/45 (71.11%), Query Frame = -1

Query:  723 GAF-LPHPNGVVYRVITTPLTTGRFPSHHLDRALPKLFWFAPTIP 854
            GAF  P P G     ITTPLTTGR PS HLD ALPKLFWF PT+P
Sbjct:    2 GAFPSPPPWGWSTGFITTPLTTGRLPSQHLDPALPKLFWFTPTLP 46

HSP 3 Score: 38.1206 bits (87), Expect = 5.375e-42
Identity = 16/21 (76.19%), Postives = 19/21 (90.48%), Query Frame = -2

Query:  449 INQNPFPNRTSFFQSIRLSGC 511
            +++NPFPN TSFFQSIRLS C
Sbjct:  116 LSKNPFPNCTSFFQSIRLSRC 136

[Close]

BLAST of EY711460 vs. ExPASy Swiss-Prot
Match: YCF72_SACOF (Uncharacterized protein ycf72 OS=Saccharum officinarum GN=ycf72-1 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.999e-41
Identity = 56/70 (80.00%), Postives = 60/70 (85.71%), Query Frame = -3

Query:  514 PLVRTVAEQFLDIKRTSPEGNFNVADVPSFAISFATAPAALANCPPFPSVISMLCMAVRKGISVEVDSSF 723
            P   TVA+QF D KRTSP+GN  VA++PSFAISFATAPAALANCPP P VISMLCMAV KGISVEVDSSF
Sbjct:   46 PTCPTVAKQFWDTKRTSPDGNLKVANLPSFAISFATAPAALANCPPLPRVISMLCMAVPKGISVEVDSSF 115

HSP 2 Score: 61.2326 bits (147), Expect = 1.999e-41
Identity = 31/45 (68.89%), Postives = 32/45 (71.11%), Query Frame = -1

Query:  723 GAF-LPHPNGVVYRVITTPLTTGRFPSHHLDRALPKLFWFAPTIP 854
            GAF  P P G     ITTPLTTGR PS HLD ALPKLFWF PT+P
Sbjct:    2 GAFPSPPPWGWSTGFITTPLTTGRLPSQHLDPALPKLFWFTPTLP 46

HSP 3 Score: 38.1206 bits (87), Expect = 1.999e-41
Identity = 16/21 (76.19%), Postives = 19/21 (90.48%), Query Frame = -2

Query:  449 INQNPFPNRTSFFQSIRLSGC 511
            +++NPFPN TSFFQSIRLS C
Sbjct:  116 LSKNPFPNCTSFFQSIRLSRC 136

[Close]

BLAST of EY711460 vs. ExPASy Swiss-Prot
Match: YCF72_SACHY (Uncharacterized protein ycf72 OS=Saccharum hybrid GN=ycf72-1 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.999e-41
Identity = 56/70 (80.00%), Postives = 60/70 (85.71%), Query Frame = -3

Query:  514 PLVRTVAEQFLDIKRTSPEGNFNVADVPSFAISFATAPAALANCPPFPSVISMLCMAVRKGISVEVDSSF 723
            P   TVA+QF D KRTSP+GN  VA++PSFAISFATAPAALANCPP P VISMLCMAV KGISVEVDSSF
Sbjct:   46 PTCPTVAKQFWDTKRTSPDGNLKVANLPSFAISFATAPAALANCPPLPRVISMLCMAVPKGISVEVDSSF 115

HSP 2 Score: 61.2326 bits (147), Expect = 1.999e-41
Identity = 31/45 (68.89%), Postives = 32/45 (71.11%), Query Frame = -1

Query:  723 GAF-LPHPNGVVYRVITTPLTTGRFPSHHLDRALPKLFWFAPTIP 854
            GAF  P P G     ITTPLTTGR PS HLD ALPKLFWF PT+P
Sbjct:    2 GAFPSPPPWGWSTGFITTPLTTGRLPSQHLDPALPKLFWFTPTLP 46

HSP 3 Score: 38.1206 bits (87), Expect = 1.999e-41
Identity = 16/21 (76.19%), Postives = 19/21 (90.48%), Query Frame = -2

Query:  449 INQNPFPNRTSFFQSIRLSGC 511
            +++NPFPN TSFFQSIRLS C
Sbjct:  116 LSKNPFPNCTSFFQSIRLSRC 136

[Close]

BLAST of EY711460 vs. ExPASy Swiss-Prot
Match: YCF72_MAIZE (Uncharacterized protein ycf72 OS=Zea mays GN=ycf72-1 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.380e-41
Identity = 56/70 (80.00%), Postives = 60/70 (85.71%), Query Frame = -3

Query:  514 PLVRTVAEQFLDIKRTSPEGNFNVADVPSFAISFATAPAALANCPPFPSVISMLCMAVRKGISVEVDSSF 723
            P   TVA+QF D KRTSP+GN  VA++PSFAISFATAPAALANCPP P VISMLCMAV KGISVEVDSSF
Sbjct:   46 PTCPTVAKQFWDTKRTSPDGNLKVANLPSFAISFATAPAALANCPPLPRVISMLCMAVPKGISVEVDSSF 115

HSP 2 Score: 61.2326 bits (147), Expect = 3.380e-41
Identity = 31/45 (68.89%), Postives = 32/45 (71.11%), Query Frame = -1

Query:  723 GAF-LPHPNGVVYRVITTPLTTGRFPSHHLDRALPKLFWFAPTIP 854
            GAF  P P G     ITTPLTTGR PS HLD ALPKLFWF PT+P
Sbjct:    2 GAFPSPPPWGWSTGFITTPLTTGRLPSQHLDPALPKLFWFTPTLP 46

HSP 3 Score: 37.3502 bits (85), Expect = 3.380e-41
Identity = 16/20 (80.00%), Postives = 18/20 (90.00%), Query Frame = -2

Query:  449 NQNPFPNRTSFFQSIRLSGC 508
            ++NPFPN TSFFQSIRLS C
Sbjct:  117 SKNPFPNCTSFFQSIRLSRC 136

[Close]

BLAST of EY711460 vs. ExPASy Swiss-Prot
Match: RK2_ORYSJ (50S ribosomal protein L2, chloroplastic OS=Oryza sativa subsp. japonica GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.051e-38
Identity = 53/64 (82.81%), Postives = 57/64 (89.06%), Query Frame = 2

Query:  533 TDMPLRTAIHNIEITLGKGGQLARAAGAVAKLIAKEGTSATLKLPSGEVRLISKNCSATVRTSG 724
            TDMPL TAIHNIEIT G+GGQLARAAGAVAKLIAKEG SATL+LPSGEVRL+S+NC ATV   G
Sbjct:  131 TDMPLGTAIHNIEITRGRGGQLARAAGAVAKLIAKEGKSATLRLPSGEVRLVSQNCLATVGQVG 194

HSP 2 Score: 71.2478 bits (173), Expect = 1.051e-38
Identity = 37/55 (67.27%), Postives = 39/55 (70.91%), Query Frame = 1

Query:  724 GMVGANQNSLGRARSKWWLGKRPVVRGVVMTL*TTPLGWGR-KAPNGKKRPATPW 885
            G VG NQ SLGRA SK WLGKRPVVRGVVM     P G G  KAP G+K+P TPW
Sbjct:  194 GNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGKAPIGRKKPTTPW 248

HSP 3 Score: 27.7202 bits (60), Expect = 1.051e-38
Identity = 15/26 (57.69%), Postives = 17/26 (65.38%), Query Frame = 3

Query:  879 PLGYPALGRRVEK-E*YSGNLIPSRR 953
            P GYPALGRR  K + YS + I  RR
Sbjct:  247 PWGYPALGRRTRKRKKYSDSFILRRR 272

[Close]

BLAST of EY711460 vs. ExPASy Swiss-Prot
Match: RK2_ORYSI (50S ribosomal protein L2, chloroplastic OS=Oryza sativa subsp. indica GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.051e-38
Identity = 53/64 (82.81%), Postives = 57/64 (89.06%), Query Frame = 2

Query:  533 TDMPLRTAIHNIEITLGKGGQLARAAGAVAKLIAKEGTSATLKLPSGEVRLISKNCSATVRTSG 724
            TDMPL TAIHNIEIT G+GGQLARAAGAVAKLIAKEG SATL+LPSGEVRL+S+NC ATV   G
Sbjct:  131 TDMPLGTAIHNIEITRGRGGQLARAAGAVAKLIAKEGKSATLRLPSGEVRLVSQNCLATVGQVG 194

HSP 2 Score: 71.2478 bits (173), Expect = 1.051e-38
Identity = 37/55 (67.27%), Postives = 39/55 (70.91%), Query Frame = 1

Query:  724 GMVGANQNSLGRARSKWWLGKRPVVRGVVMTL*TTPLGWGR-KAPNGKKRPATPW 885
            G VG NQ SLGRA SK WLGKRPVVRGVVM     P G G  KAP G+K+P TPW
Sbjct:  194 GNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGKAPIGRKKPTTPW 248

HSP 3 Score: 27.7202 bits (60), Expect = 1.051e-38
Identity = 15/26 (57.69%), Postives = 17/26 (65.38%), Query Frame = 3

Query:  879 PLGYPALGRRVEK-E*YSGNLIPSRR 953
            P GYPALGRR  K + YS + I  RR
Sbjct:  247 PWGYPALGRRTRKRKKYSDSFILRRR 272

[Close]

BLAST of EY711460 vs. ExPASy Swiss-Prot
Match: RK2_ORYSA (50S ribosomal protein L2, chloroplastic OS=Oryza sativa GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.051e-38
Identity = 53/64 (82.81%), Postives = 57/64 (89.06%), Query Frame = 2

Query:  533 TDMPLRTAIHNIEITLGKGGQLARAAGAVAKLIAKEGTSATLKLPSGEVRLISKNCSATVRTSG 724
            TDMPL TAIHNIEIT G+GGQLARAAGAVAKLIAKEG SATL+LPSGEVRL+S+NC ATV   G
Sbjct:  131 TDMPLGTAIHNIEITRGRGGQLARAAGAVAKLIAKEGKSATLRLPSGEVRLVSQNCLATVGQVG 194

HSP 2 Score: 71.2478 bits (173), Expect = 1.051e-38
Identity = 37/55 (67.27%), Postives = 39/55 (70.91%), Query Frame = 1

Query:  724 GMVGANQNSLGRARSKWWLGKRPVVRGVVMTL*TTPLGWGR-KAPNGKKRPATPW 885
            G VG NQ SLGRA SK WLGKRPVVRGVVM     P G G  KAP G+K+P TPW
Sbjct:  194 GNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGKAPIGRKKPTTPW 248

HSP 3 Score: 27.7202 bits (60), Expect = 1.051e-38
Identity = 15/26 (57.69%), Postives = 17/26 (65.38%), Query Frame = 3

Query:  879 PLGYPALGRRVEK-E*YSGNLIPSRR 953
            P GYPALGRR  K + YS + I  RR
Sbjct:  247 PWGYPALGRRTRKRKKYSDSFILRRR 272

The following BLAST results are available for this feature:

BLAST of EY711460 vs. ExPASy Swiss-Prot

BLAST of EY711460 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
YCF72_ORYSJ	5.375e-42	81.43	Uncharacterized protein ycf72 OS=Oryza sativa subs...	[more]
YCF72_ORYSI	5.375e-42	81.43	Uncharacterized protein ycf72 OS=Oryza sativa subs...	[more]
YCF72_ORYSA	5.375e-42	81.43	Uncharacterized protein ycf72 OS=Oryza sativa GN=y...	[more]
YCF72_ORYNI	5.375e-42	81.43	Uncharacterized protein ycf72 OS=Oryza nivara GN=y...	[more]
YCF72_SACOF	1.999e-41	80.00	Uncharacterized protein ycf72 OS=Saccharum officin...	[more]
YCF72_SACHY	1.999e-41	80.00	Uncharacterized protein ycf72 OS=Saccharum hybrid ...	[more]
YCF72_MAIZE	3.380e-41	80.00	Uncharacterized protein ycf72 OS=Zea mays GN=ycf72...	[more]
RK2_ORYSJ	1.051e-38	82.81	50S ribosomal protein L2, chloroplastic OS=Oryza s...	[more]
RK2_ORYSI	1.051e-38	82.81	50S ribosomal protein L2, chloroplastic OS=Oryza s...	[more]
RK2_ORYSA	1.051e-38	82.81	50S ribosomal protein L2, chloroplastic OS=Oryza s...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C3-702-007-H12-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY711460 ID=EY711460; Name=EY711460; organism=Citrus sinensis; type=EST; length=962bp
GTACCCTTTGTCACTGTTCCGGAATTCTTTCGCTCGACCCACGCGTCCGA
TTGTTTCAATCACCGACAGAACCAGAAGCGCCCCTTGTTTCAAAGAGAGG
AGGACGGGTTATTCACATTTGATTTGATGGTCAGAGGCGAATTGAAAGCT
AAGCAGTGGTAATAGTAATTCGAAAGATTTCCCGGGGAAAAATAGAGATG
TCTCCTACGTTACCCATAATATGTGGAAGTATCGACGTAATTTCATAGAG
TCATTCGGTCTGAATGCTACATGAAGAACATAAGCCAGATGACGGAACGG
GAAGACCTAGGATGTAGAAGATCATAACATGAGTGATTCGGCAGATTTGG
ATTCCTATATATCCACTCATGTGGTACTTCATTATATGATATTGTGGTAC
TTCATTATATGATATATATAAGATCCATCTGTATAGATATCATCATCTAC
ATCCAGAAAGCCGTATGCTTTGGAAGAAGCTTGTACGGTTTGGGAAGGGG
TTTTGATTGATCAAAAAGATGAATCTACTTCAACCGATATGCCCTTACGC
ACGGCCATACATAACATAGAAATCACACTTGGAAAGGGTGGACAATTAGC
TAGAGCAGCGGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGGACATCGG
CCACATTAAAATTACCTTCTGGGGAGGTCCGTTTGATATCCAAAAACTGC
TCAGCAACAGTCCGGACAAGTGGGGAATGGTGGGGGCGAACCAGAATAGT
TTGGGTAGAGCCCGATCTAAATGGTGGCTAGGAAAGCGTCCTGTAGTAAG
AGGAGTAGTTATGACCCTGTAAACCACCCCATTGGGGTGGGGAAGAAAGG
CTCCAAATGGTAAAAAAAGACCGGCAACCCCTTGGGTTATCCTGCCCTTG
GAAGACGAGTTGAAAAGGAATAATATAGTGGAAATTTGATTCCTTCCCGC
CGAACTAATAGG