EY711458

Overview
NameEY711458
Unique NameEY711458
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length937
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10551 contig Csv1_Contig10551:1..938. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY711458 vs. ExPASy Swiss-Prot
Match: C3H46_ARATH (Zinc finger CCCH domain-containing protein 46 OS=Arabidopsis thaliana GN=At3g51950 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 3.205e-20
Identity = 81/227 (35.68%), Postives = 99/227 (43.61%), Query Frame = 2
Query:   38 GARMFYNNTQDMLWRRKMXXXXXXXXXXXXXSRRLMGLQLLDVKKHHHHRALSTGSPIPSPTHSPNIFHQNLVFPPLHSSSAEPSPENGSNPLPTFSAPAAEKHVANGKEFTSCEENI-NRKDTSLDENNAVPENLEHNLPDSPFASPTKGTGEYFSAFSNNANGTEKDXXXXXXXXXXXXXXXXXXXASLDMASFKSFNCQMPRFSSGHGAIGMYTGTGGPTCPVG 715
            G R FYNNTQD+LWR K              SRRLM LQLLDVKKH    +       P+  HSPN F Q+L+ P                PL               +E+   E+   + K+ S D+   +PE LE +LPDSPFASP      +   F+++A+    D                    S    SF SFN QMPR      AIGM  G GGPTC VG
Sbjct:  365 GGRGFYNNTQDVLWRSKFEEEILELQ-----SRRLMNLQLLDVKKHFQLNS-------PTNIHSPNPFSQSLISP---------------RPLSVIK-----------REYDGGEKGKGSSKEGSDDDTMNLPERLEDSLPDSPFASP----AHHLLLFADSADNNGSD------LWSPSSDNDDNSTPSTLSDSFNSFNYQMPRLP----AIGMLPGRGGPTCRVG 539          
BLAST of EY711458 vs. ExPASy Swiss-Prot
Match: C3H22_ORYSJ (Zinc finger CCCH domain-containing protein 22 OS=Oryza sativa subsp. japonica GN=Os03g0328900 PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 3.432e-14
Identity = 75/234 (32.05%), Postives = 103/234 (44.02%), Query Frame = 2
Query:   14 RDPFDL-QHGARMFY--NNTQDMLWRRKMXXXXXXXXXXXXX---SRRLMGLQLLDVKKHHHHRALSTGSPIPSPTHSPNIFHQNLVFPPLHSSSAEPSPENGSNPLPTFSAPAAEKHVANGKEFTSCEENINRKDTSLDENNAVPENLEHNLPDSPFASPTKGTGEYFSAFSNNANGT------EKDXXXXXXXXXXXXXXXXXXXASLDMASFKSFNCQMPRFSSGHGAIGM 679
            RDPFDL Q GARM    N+T +M+ RRK+                SRRLM LQLLD+K +    A++T   +  PT   N F  +    PL ++  E  P++G     T       K V  G +    EE+      + D +    ++LEHNLPDSPFASPTK +     +F+    G                             ++LD+ S + F     R +S HGAIGM
Sbjct:  468 RDPFDLHQLGARMLQHSNSTNEMMLRRKLEEQQQAAELQQAIELHSRRLMDLQLLDLK-NRAAAAVTTAMAMTIPT--ANAFGSS---QPLATTMVESPPDSGEQLKGTGYFTEERKMVNGGGDK---EESAGEASLNADSD----QSLEHNLPDSPFASPTKSSVSAHQSFTTTDTGVVATSSCSASHVGISAGTNAGGGINHLRPSTLDIPSPRDFFSVSSRLASDHGAIGM 688          
BLAST of EY711458 vs. ExPASy Swiss-Prot
Match: C3H23_ORYSJ (Zinc finger CCCH domain-containing protein 23 OS=Oryza sativa subsp. japonica GN=Os03g0329200 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.304e-13
Identity = 76/233 (32.62%), Postives = 105/233 (45.06%), Query Frame = 2
Query:   11 ARDPFDL-QHGARMFY--NNTQDMLWRRKMXXXXXXXXXXXXX---SRRLMGLQLLDVKKHHH-HRALSTGSPIPSPTHSPNIFHQNLVFPPLHSSSAEPSPENGSNPLPTFSAPAAEKHVANGKEFTSCEENINRKDTSLDENNAVPENLEHNLPDSPFASPTKGTGEYFSAFSNNANGTEKD---XXXXXXXXXXXXXXXXXXXASLDMASFKSFNCQMPRFSSGHGAIGM 679
            ARDPFD  Q GARM    N+  +++ RRK+                SRRL+GLQLLD+K     H A +T   +P+P    N F       P  ++  E  P +    + +  +P+  K V  G +  S  E     D+         ++ EHNLPDSPFAS TK T  +F+A +  A G+E D                       +LD+ S ++    MPR S  HGAIGM
Sbjct:  460 ARDPFDFHQLGARMLQHSNSANELMLRRKLEEQQQAAELQQAIDLHSRRLIGLQLLDLKSSAAVHAAETTTMSLPTPI--TNAFTSG---QPGATTIVESPPSSTGQLMASCGSPSEGKVVNGGNKADSAGEVTRNADSD--------QSGEHNLPDSPFASSTKSTA-FFTATAATAIGSEGDFTTGSSCNIGGSAVGSANPLRPPTLDIPSPRTCFFPMPRLSE-HGAIGM 677          
The following BLAST results are available for this feature:
BLAST of EY711458 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
C3H46_ARATH3.205e-2035.68Zinc finger CCCH domain-containing protein 46 OS=A... [more]
C3H22_ORYSJ3.432e-1432.05Zinc finger CCCH domain-containing protein 22 OS=O... [more]
C3H23_ORYSJ1.304e-1332.62Zinc finger CCCH domain-containing protein 23 OS=O... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-702-007-H10-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711458 ID=EY711458; Name=EY711458; organism=Citrus sinensis; type=EST; length=937bp
CCACGCGTCCGCAAGAGACCCTTTTGACCTTCAACATGGGGCAAGAATGT
TCTATAATAATACTCAGGACATGCTGTGGAGGAGGAAAATGGAGGAGCAA
GCTGATTTGCAGCAAGCCCTCGAGCTTCAAAGTAGAAGATTAATGGGGCT
ACAACTTCTTGATGTTAAGAAGCATCATCATCACAGGGCTCTTTCTACTG
GCAGCCCAATTCCTTCCCCCACTCACTCTCCTAATATTTTCCATCAAAAT
CTTGTCTTTCCTCCACTTCACAGCAGCAGTGCAGAACCTTCACCAGAGAA
TGGTTCGAACCCTTTGCCCACATTTTCTGCTCCTGCTGCTGAGAAGCATG
TTGCAAATGGCAAGGAATTCACCAGCTGTGAAGAAAATATCAATAGAAAG
GATACCTCCCTTGATGAAAACAATGCTGTGCCAGAAAACTTGGAGCACAA
TCTTCCTGATAGCCCCTTTGCATCTCCTACTAAAGGCACTGGAGAATACT
TTTCAGCTTTCTCAAATAATGCCAATGGGACCGAAAAAGATGCCGCAACA
TCTGCTGCTAACAATAATTTGGTTTCTTCTAACTTAACCACTGCTAATGC
TTCTCTAGACATGGCATCTTTCAAATCTTTTAACTGTCAAATGCCTAGGT
TCTCATCTGGGCATGGAGCCATAGGAATGTACACGGGCACGGGTGGACCG
ACTTGTCCTGTGGGAAACTAGNTTCTTCCTTCCTACTTGGGAGATTACGA
AGAATAAAGAACCCAAAAAAAAAACTTACTCCGAGACTGTAGGGAAACAC
CACAGCTTCCAATCCTAATACCATCATCAACACCGTCATTCTCATCTTAC
CGTTCGGTATTGGCTGGAATTGGGGACTTACTGTTACTCTTACTACCATA
CAAATTTGCATACGCAAATGGTGGGAAGAAGTGGGTC
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