EY711417

Overview
NameEY711417
Unique NameEY711417
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length972
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10549 contig Csv1_Contig10549:1..973. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY711417 vs. ExPASy Swiss-Prot
Match: SIZ1_ARATH (E3 SUMO-protein ligase SIZ1 OS=Arabidopsis thaliana GN=SIZ1 PE=1 SV=2)

HSP 1 Score: 241.506 bits (615), Expect = 5.516e-63
Identity = 156/308 (50.65%), Postives = 189/308 (61.36%), Query Frame = 3
Query:   45 RVRIGDLPSWHFPDGSLCAPAGGEDKPKVEMLKHVKQEGVSEGHIGLKLGIRKNRNGLWEVSKPEDMNGSSGSRLQEKFENHDLKVIPMSSSATGSGRDGEDASVNQDVGGTFDFTNNGIEHDSMSLNVDPTYAFADRNPCAPVGNAEVIVLSDSEDENDLFISSENIYRDNRNDVGGVSFSVPSAGIANSYPEDPAIGAGGDSCLGYLASNDNDFWMPLWPLPSGT---XGGQVFSCLARM*MSQMALWICSTALSTVQLX*MXIHWPPDTFMGSASLVPG*TVGAAAE*GMLYGQSLAFYRKDPPL 959
            R  +G+L  WH PDGSLC P+  + K K+EML  VKQEG S+G   LKLGIRKNRNG+WEVSKP + NG S S  QEK    +  +IPMSSSATGSGRDG+DASVNQD  GTFDF  NG+E DS+S+NVD  Y F DRN     GN EVIVLSDS+DENDL I+    Y   + D GG++F +   GI NSY EDP   AGG S LG L ++D++F  PLW  PS T    G Q+F   A +    + L   S    + ++        P+T M S  +VPG T  + A  G L    LAF R DP L
Sbjct:  455 RRELGELSQWHAPDGSLC-PSAVDIKRKMEMLP-VKQEGYSDGPAPLKLGIRKNRNGIWEVSKP-NTNGLSSSNRQEKVGYQEKNIIPMSSSATGSGRDGDDASVNQDAIGTFDFVANGMELDSISMNVDSGYNFPDRNQSGEGGNNEVIVLSDSDDENDLVITPGPAYSGCQTD-GGLTFPLNPPGIINSYNEDPHSIAGGSSGLG-LFNDDDEFDTPLWSFPSETPEAPGFQLFRSDADVSGGLVGLHHHSPLNCSPEIN-GGYTMAPETSMASVPVVPGSTGRSEANDG-LVDNPLAFGRDDPSL 755          
BLAST of EY711417 vs. ExPASy Swiss-Prot
Match: SIZ1_ORYSJ (E3 SUMO-protein ligase SIZ1 OS=Oryza sativa subsp. japonica GN=SIZ1 PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.793e-29
Identity = 92/228 (40.35%), Postives = 119/228 (52.19%), Query Frame = 3
Query:   60 DLPSWHFPDGSLCAPAGGED-KPKVEMLKHVKQEGVSEGHIGLKLGIRKNRNGLWEVSKPEDMNGSS--GSRLQEKFENHDL-KVIPMSSSATGSGRDGEDASVNQDVGGTFDFT-NNG-IEHDSMSLNVDPTYAFADRNPCAPVGNAEVIVLSDSEDENDLFISSENIYRDNRNDVGGVSFSVPSAGI--ANSYPEDPAIGAGGDSCLGYLASNDNDFWMPLWPLPS 719
            +L  WH PDG+LC P   ED KP ++       EG S+G   LK+GI++N NG+WEVS   D    S  G+R+Q       L  ++ MS+S T S RDGED SVNQ+     D + NNG  E DS SLN        DR P       +VIVLSDS++END  +    +Y DN     G  F   + GI     Y ED  +G  G   LG L++N +DF M  W + S
Sbjct:  456 ELSQWHMPDGTLCNPK--EDVKPAMQNGNEQMMEGTSDGQKSLKIGIKRNPNGIWEVSSKADDKKPSVVGNRMQNNSGFRALNNIMHMSNSPTSSYRDGEDPSVNQESNRHVDLSLNNGNNEFDSFSLNFGQACNTDDR-PQQQHNATDVIVLSDSDEENDAMVCPPAVY-DNTTTANGSGFPFTTNGIGYTERYQEDAGVGTSG---LGLLSNNVDDFEMNNWQMHS 676          

HSP 2 Score: 21.557 bits (44), Expect = 2.793e-29
Identity = 23/85 (27.06%), Postives = 35/85 (41.18%), Query Frame = 2
Query:  737 GFQLFSPDVDVPDGFMDLQHGSINCSTPMNGYTLASRYFHGFCILSPRLN-CWSCCRMRDALW-----------AIPCFLPERPS 955
            GFQ F  D DV + F+   H S   +   N Y+L          ++P L+ C +   M  +L            ++  FLP +PS
Sbjct:  684 GFQFFGNDTDVHNTFVG-SHNSFGLAP--NDYSLDCNVGVEEASVTPALSVCRNSNEMHGSLVDNPLALVGDDPSLQIFLPSQPS 765          
BLAST of EY711417 vs. ExPASy Swiss-Prot
Match: SIZ2_ORYSJ (E3 SUMO-protein ligase SIZ2 OS=Oryza sativa subsp. japonica GN=SIZ2 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 6.607e-16
Identity = 68/219 (31.05%), Postives = 105/219 (47.95%), Query Frame = 3
Query:   63 LPSWHFPDGSLCAPAGGEDKPKVEMLK-HVKQEGVSEGHIG-LKLGIRKNRNGLWEVSKPEDMNGSSGSRLQEKFENHDLKVIPMSSSATGSGRDGEDASVNQDVGGTFDFTNNGIEHDSMSLNVDPTYAFADRNPCAPVGNAEVIVLSDSEDENDLFISSENIYRDNRNDVGGVSFSVP--SAGIANSYPEDPAIGAGGDSCLGYLASNDNDFWMPLW 707
            L  WH PDG+LC P     KP + ++K  +K+E +SE   G LKLGIR+N NG WE++K  D N      +++  EN       + S++     + ++   N + G     T+N  + DS  ++           P AP    +VIVLSDS+D+N + +S  ++   + +D G      P  ++GI    P     GAG D    +L   D D  +P W
Sbjct:  467 LAQWHLPDGTLCMPTDTRSKPNIRIVKQEIKEEPLSEETGGRLKLGIRRNNNGQWEINKRLDSNNGQNGYIED--EN------CVVSASNTDDENSKNGIYNPEPGQFDQLTSNIYDLDSSPMDA--------HFPPAPT-EQDVIVLSDSDDDNVMVLSPGDVNFSSAHDNGNAFPPNPPEASGICGEQPR----GAGPD-VTSFLDGFD-DLELPFW 662          
The following BLAST results are available for this feature:
BLAST of EY711417 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
SIZ1_ARATH5.516e-6350.65E3 SUMO-protein ligase SIZ1 OS=Arabidopsis thalian... [more]
SIZ1_ORYSJ2.793e-2940.35E3 SUMO-protein ligase SIZ1 OS=Oryza sativa subsp.... [more]
SIZ2_ORYSJ6.607e-1631.05E3 SUMO-protein ligase SIZ2 OS=Oryza sativa subsp.... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-702-007-E03-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711417 ID=EY711417; Name=EY711417; organism=Citrus sinensis; type=EST; length=972bp
CACTGGTCACCTTTGGTACTATTCCGGAATTTCTTCTCGACCCACGCGTC
CGAATTGGAGATTTACCGTCCTGGCACTTTCCTGATGGTTCTCTCTGTGC
TCCTGCTGGCGGGGAGGATAAACCAAAAGTGGAAATGTTGAAGCATGTTA
AGCAGGAAGGTGTTTCAGAAGGTCATATTGGTTTGAAACTTGGAATCAGG
AAGAATCGCAACGGGCTGTGGGAAGTTAGCAAACCTGAAGACATGAATGG
CTCTTCTGGTAGTAGATTACAGGAGAAGTTTGAAAATCATGATCTGAAAG
TCATCCCAATGAGCAGCAGCGCTACTGGAAGTGGTAGGGATGGTGAAGAT
GCAAGTGTAAATCAGGATGTTGGTGGAACCTTCGATTTCACCAACAATGG
AATAGAGCATGATTCTATGTCTTTGAATGTTGACCCGACGTATGCATTTG
CTGACAGAAATCCATGTGCACCGGTTGGCAATGCAGAAGTTATTGTTCTT
AGTGATTCTGAAGATGAGAATGACCTCTTCATATCTTCTGAAAACATATA
TAGGGACAACCGAAATGATGTCGGTGGGGTTTCTTTTTCTGTGCCCTCTG
CGGGAATTGCCAATTCCTACCCTGAAGATCCTGCTATTGGTGCTGGGGGG
GACTCGTGCTTGGGTTATCTTGCTTCCAATGACAATGATTTTTGGATGCC
TCTTTGGCCTTTACCATCTGGAACTCANGGAGGGCAGGTTTTCAGCTGTT
TAGCCCGGATGTAGATGTCCCAGATGGCTTTATGGATTTGCAGCACGGCT
CTATCAACTGTTCAACTCCNATGAATGGNTATACATTGGCCTCCAGATAC
TTTCATGGGTTCTGCATCCTTAGTCCCAGGTTGAACTGTTGGAGCTGCTG
CCGAATGAGGGATGCTTTATGGGCAATCCCTTGCTTTTTACCGGAAAGAC
CCTCCCTTAAATTTTCTTCAAC
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