EY711348

Overview
NameEY711348
Unique NameEY711348
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length946
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY711348_ssr145 microsatellite EY711348_ssr145:145..156. BLAST: Citrus ESTs to Prunus persica proteins V1
EY711348_ssr223 microsatellite EY711348_ssr223:223..234. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY711348 vs. ExPASy Swiss-Prot
Match: IPO5_MOUSE (Importin-5 OS=Mus musculus GN=Ipo5 PE=1 SV=3)

HSP 1 Score: 115.546 bits (288), Expect = 4.366e-25
Identity = 57/159 (35.85%), Postives = 94/159 (59.12%), Query Frame = 3
Query:  234 VFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQFHRDSIDAAQXVPAW 710
            +  +V +IL ++  ++K   LP+F++L   +  +    +   +R+  +CIFDD+ E C  A+ KY E ++  +L+   D + +VRQAA YGLGV A+FGG   +P   +AL  L  VI+ P A   EN+ A +N +SA+GKI +F  D ++  + +P W
Sbjct:  838 ILTKVSDILHSIFSSYKEKVLPWFEQLLPLIVNLICPQRPWPDRQWGLCIFDDIVEHCSPASFKYAEYFISPMLQYVCDNSPEVRQAAAYGLGVMAQFGGDNYRPFCTDALPLLVRVIQAPEAKTKENVNATENCISAVGKIMKFKPDCVNVEEVLPHW 996          
BLAST of EY711348 vs. ExPASy Swiss-Prot
Match: RNBP6_MOUSE (Ran-binding protein 6 OS=Mus musculus GN=Ranbp6 PE=2 SV=3)

HSP 1 Score: 112.464 bits (280), Expect = 3.696e-24
Identity = 68/221 (30.77%), Postives = 116/221 (52.49%), Query Frame = 3
Query:  234 VFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQFHRDSIDAAQXVPAWXNCFAI----KVI*LRLNCS*TALFNGREVRQ*SSGSPPSYLPKIVSVFAETLVGRSSTEQN 884
            +  +V +IL +L  T+K   LP+F++L   +  +    +   +R+  +CIFDD+ E C   + KY E +   +L    D N +VRQAA YGLGV A+FGG   + L  EA+  L  VI+  N+   +N++A +N +SA+GKI +F  + ++  + +P W +   +    +     LN     + +   V     G   S LPKI+S+ AE  +  + + ++
Sbjct:  846 ILTKVSDILHSLFSTYKEKILPWFEQLLPLIVNLICSSRPWPDRQWGLCIFDDIIEHCSPTSFKYVEYFRWPMLLNMRDNNPEVRQAAAYGLGVMAQFGGDDYRSLCSEAVPLLVKVIKCANSKTKKNVIATENCISAIGKILKFKPNCVNVDEVLPHWLSWLPLHEDKEEAIQTLNFLCDLIESNHPV---VIGPNNSNLPKIISIIAEGKINETISHED 1063          
BLAST of EY711348 vs. ExPASy Swiss-Prot
Match: IPO5_HUMAN (Importin-5 OS=Homo sapiens GN=IPO5 PE=1 SV=4)

HSP 1 Score: 112.079 bits (279), Expect = 4.827e-24
Identity = 57/159 (35.85%), Postives = 94/159 (59.12%), Query Frame = 3
Query:  234 VFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQFHRDSIDAAQXVPAW 710
            +  +V +IL ++  ++K   LP+F++L   +  +    +   +R+  +CIFDDV E C  A+ KY E +L  +L+   D + +VRQAA YGLGV A++GG   +P   EAL  L  VI+  ++   EN+ A +N +SA+GKI +F  D ++  + +P W
Sbjct:  838 ILTKVSDILHSIFSSYKEKVLPWFEQLLPLIVNLICPHRPWPDRQWGLCIFDDVIEHCSPASFKYAEYFLRPMLQYVCDNSPEVRQAAAYGLGVMAQYGGDNYRPFCTEALPLLVRVIQSADSKTKENVNATENCISAVGKIMKFKPDCVNVEEVLPHW 996          
BLAST of EY711348 vs. ExPASy Swiss-Prot
Match: RNBP6_HUMAN (Ran-binding protein 6 OS=Homo sapiens GN=RANBP6 PE=1 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 1.075e-23
Identity = 56/159 (35.22%), Postives = 92/159 (57.86%), Query Frame = 3
Query:  234 VFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQFHRDSIDAAQXVPAW 710
            +  +V +IL +L  T+K   LP+F++L   +  +    +   +R+  +CIFDD+ E C   + KY E +   +L    D N +VRQAA YGLGV A+FGG   + L  EA+  L  VI+  N+   +N++A +N +SA+GKI +F  + ++  + +P W
Sbjct:  846 ILTKVSDILHSLFSTYKEKILPWFEQLLPLIVNLICSSRPWPDRQWGLCIFDDIIEHCSPTSFKYVEYFRWPMLLNMRDNNPEVRQAAAYGLGVMAQFGGDDYRSLCSEAVPLLVKVIKCANSKTKKNVIATENCISAIGKILKFKPNCVNVDEVLPHW 1004          
BLAST of EY711348 vs. ExPASy Swiss-Prot
Match: IMB3_SCHPO (Importin subunit beta-3 OS=Schizosaccharomyces pombe GN=sal3 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.663e-16
Identity = 58/209 (27.75%), Postives = 103/209 (49.28%), Query Frame = 3
Query:  234 VFDQVGEILGTLIKTFKAAFLPFFDELSSYLTP-MWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQFHRDSI-DAAQXVPAWXNCFAIKVI*LRLNCS*TALFNGREVRQ*SSGSPPSYLPKIVSVFAET 854
            + +++ +    ++K  K AF PF++ L  Y+   + G D  A++   A+C+ DD+ E     +  Y + +LP+L E       ++RQAA YG+GV A+ GG +   +   AL  L  ++  P+A   E + A +N   A+ KIC+F    + D  + V  W N   +         + T L    E+ + +  +  S +P I+++ AET
Sbjct:  843 LLNEINKTFSVVLKIHKTAFCPFWERLLPYMDGFLSGNDTVAKQW--ALCMMDDLIEFTGPDSWNYKDHFLPYLAEGIQSSEPEIRQAASYGIGVAAQHGGELYAEICSSALPALFKMLELPDARDEEQIYATENICVAICKICRFCSQRVQDLDKVVTYWINTLPVTHDEDDAPYAYTFL---AELMEQNHVAVASQMPTIITILAET 1046          
The following BLAST results are available for this feature:
BLAST of EY711348 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
IPO5_MOUSE4.366e-2535.85Importin-5 OS=Mus musculus GN=Ipo5 PE=1 SV=3[more]
RNBP6_MOUSE3.696e-2430.77Ran-binding protein 6 OS=Mus musculus GN=Ranbp6 PE... [more]
IPO5_HUMAN4.827e-2435.85Importin-5 OS=Homo sapiens GN=IPO5 PE=1 SV=4[more]
RNBP6_HUMAN1.075e-2335.22Ran-binding protein 6 OS=Homo sapiens GN=RANBP6 PE... [more]
IMB3_SCHPO1.663e-1627.75Importin subunit beta-3 OS=Schizosaccharomyces pom... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-702-006-F10-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711348 ID=EY711348; Name=EY711348; organism=Citrus sinensis; type=EST; length=946bp
TGCAGGACCGGTCCGGATTCCCGTGCCGACCCCGCGTCCGCATTGAATGA
ATGCCACAGATCTCGGGGCCACTTCTGGATGAAGGCCAGGTCAGATCCAT
TGTAGATGAGATAAAACAGGTGATCACAGCCAGCTCTAGTAGAAAGAGAG
AGAGAGCAGAGAGGGCCAAAGCTGAAGACTTTGATGCTGAGGAGTCAGAA
TTGATTAAAGAGGAGAATGAACAAGAAGAAGAAGTTTTTGACCAAGTGGG
TGAAATTTTGGGAACTTTGATCAAAACATTTAAAGCTGCTTTCTTGCCAT
TCTTTGATGAGCTATCTTCGTATCTGACACCTATGTGGGGCAAGGATAAG
ACTGCTGAAGAGAGAAGGATTGCAATCTGCATTTTTGATGATGTTGCTGA
GCAGTGTCGAGAGGCTGCTCTTAAGTATTACGAGACATATCTTCCATTCT
TGTTGGAGGCCTGCAATGATGAGAACCAAGATGTCCGACAGGCAGCTGTA
TATGGGCTTGGTGTTTGTGCAGAGTTTGGTGGATCTGTAGTTAAACCACT
TGTTGGCGAGGCTTTATCAAGGCTAAATGTTGTAATACGGCATCCTAATG
CTTTGCAACCTGAGAATTTGATGGCTTATGATAATGCTGTTTCTGCATTG
GGAAAAATATGCCAGTTTCATCGTGACAGTATTGACGCAGCTCAGGNTGT
TCCTGCATGGNNTAACTGCTTTGCCATAAAGGTGATTTGATTGAGGCTAA
ATTGTTCATGAACAGCTTTGTTCAATGGGAGAGAGGTCAGACAGTGATCT
TCTGGGTCCCCACCATCATATCTTCCTAAAATTGTTTCAGTGTTTGCTGA
GACCCTTGTGGGAAGATCTAGCACTGAACAAAATTAAGTCGATATGTCAT
CTTTTGAAGCACTCAGCAGACATGGCGCCAGCTCCCTTGCTTCACA
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