EY711339

Overview
NameEY711339
Unique NameEY711339
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length620
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9697 contig Csv1_Contig9697:1217..1837. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY711339 vs. ExPASy Swiss-Prot
Match: HMCS_ARATH (Hydroxymethylglutaryl-CoA synthase OS=Arabidopsis thaliana GN=HMGS PE=2 SV=2)

HSP 1 Score: 165.622 bits (418), Expect = 1.793e-40
Identity = 84/123 (68.29%), Postives = 100/123 (81.30%), Query Frame = 1
Query:   16 SELDG*RVVLFSYGSGLTATMFSLKLSEGRHPFSLSNILSVMNVAGKLKSRHEFPPENFVEVMKLMEHRYGAKDFVTSKDS--SLLAPGTYYLTEVDSMYRRFYAKKPADVTNCENGSLANGH 378
            ++L G RVV+FSYGSG TATMFSL+L++ + PFS+SNI SVM+V GKLK+RHE+ PE FVE MKLMEHRYGAKDFVT+K+    LLAPGTYYL EVDS+YRRFY KK       E+GS+ANGH
Sbjct:  345 NDLAGKRVVMFSYGSGSTATMFSLRLNDNKPPFSISNIASVMDVGGKLKARHEYAPEKFVETMKLMEHRYGAKDFVTTKEGIIDLLAPGTYYLKEVDSLYRRFYGKKG------EDGSVANGH 461          
BLAST of EY711339 vs. ExPASy Swiss-Prot
Match: HMCS1_BLAGE (Hydroxymethylglutaryl-CoA synthase 1 OS=Blattella germanica GN=HMGCS-1 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.170e-15
Identity = 46/112 (41.07%), Postives = 66/112 (58.93%), Query Frame = 1
Query:    4 STHASELDG*RVVLFSYGSGLTATMFSLKLS-EGRHPFSLSNILS-VMNVAGKLKSRHEFPPENFVEVMKLMEHRYGAKDFVTSKDSSLLAPGTYYLTEVDSMYRRFYAKKP 333
            S  A EL G RV LFSYGSGL ++MFSL++S +     SL  ++S + ++  +L  RH+  PE F + M+  EH +    +       +L PGT+YL  VDS+YRR Y + P
Sbjct:  341 SKSAQELAGKRVALFSYGSGLASSMFSLRISSDASAKSSLQRLVSNLSHIKPQLDLRHKVSPEEFAQTMETREHNHHKAPYTPEGSIDVLFPGTWYLESVDSLYRRSYKQVP 452          
BLAST of EY711339 vs. ExPASy Swiss-Prot
Match: HMCS2_RAT (Hydroxymethylglutaryl-CoA synthase, mitochondrial OS=Rattus norvegicus GN=Hmgcs2 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.528e-15
Identity = 48/109 (44.04%), Postives = 63/109 (57.80%), Query Frame = 1
Query:   13 ASELDG*RVVLFSYGSGLTATMFSLKLSEGRHPFSLSNIL--SVMNVAGKLKSRHEFPPENFVEVMKLMEHRYGAKDFVTSKDSSLLAPGTYYLTEVDSMYRRFYAKKP 333
            A EL G R+  FSYGSGL A+ FS ++S+   P S    L  SV ++  +L SR    PE F E+M   E  Y   +F    D+S L PGT+YL  VD M+RR YA++P
Sbjct:  399 AQELAGSRIGAFSYGSGLAASFFSFRVSKDASPGSPLEKLVSSVSDLPKRLDSRRRMSPEEFTEIMNQREQFYHKVNFSPPGDTSNLFPGTWYLERVDEMHRRKYARRP 507          
BLAST of EY711339 vs. ExPASy Swiss-Prot
Match: HMCS2_MOUSE (Hydroxymethylglutaryl-CoA synthase, mitochondrial OS=Mus musculus GN=Hmgcs2 PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 5.807e-15
Identity = 48/109 (44.04%), Postives = 62/109 (56.88%), Query Frame = 1
Query:   13 ASELDG*RVVLFSYGSGLTATMFSLKLSEGRHPFSLSNIL--SVMNVAGKLKSRHEFPPENFVEVMKLMEHRYGAKDFVTSKDSSLLAPGTYYLTEVDSMYRRFYAKKP 333
            A EL G R+  FSYGSGL A+ FS ++S+   P S    L  SV ++  +L SR    PE F E+M   E  Y   +F    D+S L PGT+YL  VD M+RR YA+ P
Sbjct:  399 AQELAGSRIGAFSYGSGLAASFFSFRVSKDASPGSPLEKLVSSVSDLPKRLDSRRRMSPEEFTEIMNQREQFYHKVNFSPPGDTSNLFPGTWYLERVDEMHRRKYARCP 507          
BLAST of EY711339 vs. ExPASy Swiss-Prot
Match: HMCS2_BOVIN (Hydroxymethylglutaryl-CoA synthase, mitochondrial OS=Bos taurus GN=HMGCS2 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.905e-15
Identity = 45/109 (41.28%), Postives = 61/109 (55.96%), Query Frame = 1
Query:   13 ASELDG*RVVLFSYGSGLTATMFSLKLSEGRHPFSLSNIL--SVMNVAGKLKSRHEFPPENFVEVMKLMEHRYGAKDFVTSKDSSLLAPGTYYLTEVDSMYRRFYAKKP 333
            A +L G R+  FSYGSGL A+ FS ++S+   P S    L  S  ++  +L SR    PE F E+M   E  Y   +F    D + L PGT+YL  VD +YRR YA++P
Sbjct:  399 AQDLAGSRIGAFSYGSGLAASFFSFRVSQDASPGSPLEKLVSSTSDLQKRLASRKRVSPEEFTEIMNQREQYYHKMNFSPPGDKNSLFPGTWYLERVDELYRRKYARRP 507          
BLAST of EY711339 vs. ExPASy Swiss-Prot
Match: HMCS2_PIG (Hydroxymethylglutaryl-CoA synthase, mitochondrial OS=Sus scrofa GN=HMGCS2 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.882e-14
Identity = 45/107 (42.06%), Postives = 61/107 (57.01%), Query Frame = 1
Query:   13 ASELDG*RVVLFSYGSGLTATMFSLKLSEGRHPFSLSNIL--SVMNVAGKLKSRHEFPPENFVEVMKLMEHRYGAKDFVTSKDSSLLAPGTYYLTEVDSMYRRFYAK 327
            A +L G R+  FSYGSGL A+ +SL++S+   P S    L  SV ++  +L SR    PE F E+M   E  Y   +F    D + L PGT+YL  VD +YRR YA+
Sbjct:  399 AQDLAGSRIGAFSYGSGLAASFYSLRVSQDASPGSPLEKLVSSVSDLPERLASRKRVSPEEFTEIMNQREQYYHKVNFTPPGDPNSLFPGTWYLERVDELYRRKYAR 505          
BLAST of EY711339 vs. ExPASy Swiss-Prot
Match: HMCS2_HUMAN (Hydroxymethylglutaryl-CoA synthase, mitochondrial OS=Homo sapiens GN=HMGCS2 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.095e-13
Identity = 45/109 (41.28%), Postives = 62/109 (56.88%), Query Frame = 1
Query:   13 ASELDG*RVVLFSYGSGLTATMFSLKLSEGRHPFSLSNIL--SVMNVAGKLKSRHEFPPENFVEVMKLMEHRYGAKDFVTSKDSSLLAPGTYYLTEVDSMYRRFYAKKP 333
            A EL G R+  FSYGSGL A+ FS ++S+   P S  + L  S  ++  +L SR    PE F E+M   E  Y   +F    D++ L PGT+YL  VD  +RR YA++P
Sbjct:  399 AQELAGSRIGAFSYGSGLAASFFSFRVSQDAAPGSPLDKLVSSTSDLPKRLASRKCVSPEEFTEIMNQREQFYHKVNFSPPGDTNSLFPGTWYLERVDEQHRRKYARRP 507          
BLAST of EY711339 vs. ExPASy Swiss-Prot
Match: HMCS1_PONAB (Hydroxymethylglutaryl-CoA synthase, cytoplasmic OS=Pongo abelii GN=HMGCS1 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.523e-12
Identity = 40/107 (37.38%), Postives = 63/107 (58.88%), Query Frame = 1
Query:   19 ELDG*RVVLFSYGSGLTATMFSLKLSEGRHPFSLSNIL--SVMNVAGKLKSRHEFPPENFVEVMKLMEHRYGAKDFVTSKDSSLLAPGTYYLTEVDSMYRRFYAKKP 333
            +L G R+ +FSYGSGL AT++SLK+++   P S  + +  S+ ++  +L SR    P+ F E MKL E  +   +++       L  GT+YL  VD  +RR YA++P
Sbjct:  364 QLAGKRIGVFSYGSGLAATLYSLKVTQDATPGSALDKITASLCDLKSRLDSRTGVAPDVFAENMKLREDTHHLVNYIPQGSIDSLFEGTWYLVRVDEKHRRTYARRP 470          
BLAST of EY711339 vs. ExPASy Swiss-Prot
Match: HMCS1_HUMAN (Hydroxymethylglutaryl-CoA synthase, cytoplasmic OS=Homo sapiens GN=HMGCS1 PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 3.523e-12
Identity = 40/107 (37.38%), Postives = 63/107 (58.88%), Query Frame = 1
Query:   19 ELDG*RVVLFSYGSGLTATMFSLKLSEGRHPFSLSNIL--SVMNVAGKLKSRHEFPPENFVEVMKLMEHRYGAKDFVTSKDSSLLAPGTYYLTEVDSMYRRFYAKKP 333
            +L G R+ +FSYGSGL AT++SLK+++   P S  + +  S+ ++  +L SR    P+ F E MKL E  +   +++       L  GT+YL  VD  +RR YA++P
Sbjct:  364 QLAGKRIGVFSYGSGLAATLYSLKVTQDATPGSALDKITASLCDLKSRLDSRTGVAPDVFAENMKLREDTHHLVNYIPQGSIDSLFEGTWYLVRVDEKHRRTYARRP 470          
BLAST of EY711339 vs. ExPASy Swiss-Prot
Match: HMCS1_RAT (Hydroxymethylglutaryl-CoA synthase, cytoplasmic OS=Rattus norvegicus GN=Hmgcs1 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.601e-12
Identity = 40/108 (37.04%), Postives = 64/108 (59.26%), Query Frame = 1
Query:   19 ELDG*RVVLFSYGSGLTATMFSLKLSEGRHPFSLSNIL--SVMNVAGKLKSRHEFPPENFVEVMKLMEHRYGAKDFVTSKDSSLLAPGTYYLTEVDSMYRRFYAKKPA 336
            +L G R+ +FSYGSGL AT++SLK+++   P S  + +  S+ ++  +L SR    P+ F E MKL E  +   +++       L  GT+YL  VD  +RR YA++P+
Sbjct:  364 QLAGKRIGVFSYGSGLAATLYSLKVTQDATPGSALDKITASLCDLKSRLDSRTCVAPDVFAENMKLREDTHHLANYIPQCSIDSLFEGTWYLVRVDEKHRRTYARRPS 471          
The following BLAST results are available for this feature:
BLAST of EY711339 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
HMCS_ARATH1.793e-4068.29Hydroxymethylglutaryl-CoA synthase OS=Arabidopsis ... [more]
HMCS1_BLAGE1.170e-1541.07Hydroxymethylglutaryl-CoA synthase 1 OS=Blattella ... [more]
HMCS2_RAT1.528e-1544.04Hydroxymethylglutaryl-CoA synthase, mitochondrial ... [more]
HMCS2_MOUSE5.807e-1544.04Hydroxymethylglutaryl-CoA synthase, mitochondrial ... [more]
HMCS2_BOVIN9.905e-1541.28Hydroxymethylglutaryl-CoA synthase, mitochondrial ... [more]
HMCS2_PIG2.882e-1442.06Hydroxymethylglutaryl-CoA synthase, mitochondrial ... [more]
HMCS2_HUMAN1.095e-1341.28Hydroxymethylglutaryl-CoA synthase, mitochondrial ... [more]
HMCS1_PONAB3.523e-1237.38Hydroxymethylglutaryl-CoA synthase, cytoplasmic OS... [more]
HMCS1_HUMAN3.523e-1237.38Hydroxymethylglutaryl-CoA synthase, cytoplasmic OS... [more]
HMCS1_RAT4.601e-1237.04Hydroxymethylglutaryl-CoA synthase, cytoplasmic OS... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-006-F01-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711339 ID=EY711339; Name=EY711339; organism=Citrus sinensis; type=EST; length=620bp
TTCTCGACCCACGCGTCCGAATTGGATGGCTAGCGAGTGGTTTTGTTCTC
GTATGGAAGTGGTTTGACTGCAACGATGTTCTCATTGAAACTCAGTGAAG
GTCGTCATCCCTTCAGCTTGTCAAACATCCTATCTGTTATGAATGTTGCA
GGGAAGTTGAAATCAAGGCATGAGTTTCCCCCAGAGAATTTTGTGGAAGT
CATGAAGCTAATGGAGCATAGATATGGAGCCAAAGACTTTGTAACAAGCA
AAGACAGTAGCCTTTTGGCTCCAGGAACATACTATCTCACTGAAGTTGAC
TCCATGTACCGGAGATTCTATGCCAAGAAGCCTGCAGATGTTACCAACTG
CGAGAATGGGTCACTTGCAAATGGTCACTAAGGGTGATCAAATTATTATT
TGTATCGCCCGAATTTGATTCATCTTGTTCAATGTTGTTTTTAATTAAGC
AAATTAGTGTTGCCCGTACTTAAAAAATATCCGTGCTTCCTTGAGTTTGT
GATGCAAAAACAAATAGTAGTTGTTCATCTGCAAGCATGCGATCAGCGGT
GAATTGTTTTCTTTGTAATAAAAGTTCCCAAATGCCTTGATTAACAAAAA
AAAAAAAAAAAAAAAAAAGG
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