EY711326

Overview
NameEY711326
Unique NameEY711326
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length875
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10533 contig Csv1_Contig10533:1..877. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY711326 vs. ExPASy Swiss-Prot
Match: PAO2_ARATH (Probable polyamine oxidase 2 OS=Arabidopsis thaliana GN=PAO2 PE=2 SV=1)

HSP 1 Score: 310.457 bits (794), Expect = 8.249e-84
Identity = 157/210 (74.76%), Postives = 175/210 (83.33%), Query Frame = 1
Query:  217 SYALLDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQRAISIVFDRRPELRLEGLAHKVLQWYLCRMEGWFAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKGAAIDDLGVGIENK**CISTKVL-AKCGVLGVVS 843
            SYAL DMDGNQVPQELVT++G  FE IL+E +KVR+E D D+SI +A SIVF R+PELRLEGLAH VLQWY+CRMEGWFAADAETIS K WD+EELLPGGHGLMVRGY PVINTLAKGLDIR+GHRVTKI R Y GVKVT E G+TFVADA V+AVPLGVLK+ TIKFEP+LP+WK  AI+DLGVGIENK      KV   K   LGVV+
Sbjct:  120 SYALFDMDGNQVPQELVTQIGVTFERILEEINKVRDEQDADISISQAFSIVFSRKPELRLEGLAHNVLQWYVCRMEGWFAADAETISAKCWDQEELLPGGHGLMVRGYRPVINTLAKGLDIRVGHRVTKIVRRYNGVKVTTENGQTFVADAAVIAVPLGVLKSGTIKFEPKLPEWKQEAINDLGVGIENKIILHFEKVFWPKVEFLGVVA 329          
BLAST of EY711326 vs. ExPASy Swiss-Prot
Match: PAO3_ARATH (Polyamine oxidase 3 OS=Arabidopsis thaliana GN=PAO3 PE=1 SV=1)

HSP 1 Score: 297.36 bits (760), Expect = 2.924e-81
Identity = 148/190 (77.89%), Postives = 160/190 (84.21%), Query Frame = 1
Query:  217 SYALLDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQRAISIVFDRRPELRLEGLAHKVLQWYLCRMEGWFAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKGAAIDDLGVGIENK 786
            SYAL D  GNQV QELVTKVGE FE IL+E  KVR+E DEDMSI +A SIVF R PELRLEGLAH VLQWYLCRMEGWFAADAETIS K WD+EELLPGGHGLMVRGY PVINTL+KGLDIRL HR+TKI+R Y GVKVT E G TFVADA V+A+PLGVLK+  I FEP+LP WK  AI+DLGVGIENK
Sbjct:  121 SYALFDKAGNQVSQELVTKVGENFEHILEEICKVRDEQDEDMSIAQAFSIVFKRNPELRLEGLAHNVLQWYLCRMEGWFAADAETISAKCWDQEELLPGGHGLMVRGYRPVINTLSKGLDIRLSHRITKISRRYSGVKVTTEKGDTFVADAAVIALPLGVLKSGMITFEPKLPQWKQEAINDLGVGIENK 310          

HSP 2 Score: 26.9498 bits (58), Expect = 2.924e-81
Identity = 10/13 (76.92%), Postives = 10/13 (76.92%), Query Frame = 2
Query:  797 FQQRFWPNVEFLG 835
            F   FWPNVEFLG
Sbjct:  315 FDNVFWPNVEFLG 327          
BLAST of EY711326 vs. ExPASy Swiss-Prot
Match: PAO4_ARATH (Probable polyamine oxidase 4 OS=Arabidopsis thaliana GN=PAO4 PE=1 SV=1)

HSP 1 Score: 252.292 bits (643), Expect = 4.127e-68
Identity = 124/191 (64.92%), Postives = 148/191 (77.49%), Query Frame = 1
Query:  217 SYALLDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQRAISIVFDRRPELRLEGLAHKVLQWYLCRMEGWFAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYIG-VKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKGAAIDDLGVGIENK 786
            SY L DM GN++P +LVTKVG+AF+ IL+ET+K+R+E   DMS+ + ISIV DR PELR EG+A++VLQWYLCRME WFA DA  ISLK WD++E L GGHGLMV+GY PVI T+AK LDIRL HRVTK+ R     V V VEGG  FVADAV++ VP+GVLKA  I+FEP LP WK +AI  LGVG ENK
Sbjct:  121 SYGLFDMHGNKIPPQLVTKVGDAFKRILEETEKIRDETANDMSVLQGISIVLDRNPELRQEGMAYEVLQWYLCRMEAWFAVDANLISLKCWDQDECLSGGHGLMVQGYEPVIRTIAKDLDIRLNHRVTKVVRTSNNKVIVAVEGGTNFVADAVIITVPIGVLKANLIQFEPELPQWKTSAISGLGVGNENK 311          

HSP 2 Score: 28.1054 bits (61), Expect = 4.127e-68
Identity = 10/13 (76.92%), Postives = 11/13 (84.62%), Query Frame = 2
Query:  797 FQQRFWPNVEFLG 835
            F + FWPNVEFLG
Sbjct:  316 FDRAFWPNVEFLG 328          
BLAST of EY711326 vs. ExPASy Swiss-Prot
Match: LDL2_ORYSJ (Lysine-specific histone demethylase 1 homolog 2 OS=Oryza sativa subsp. japonica GN=Os08g0143400 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.989e-17
Identity = 62/195 (31.79%), Postives = 97/195 (49.74%), Query Frame = 1
Query:  217 SYALLDMDGNQVPQELVTKVGEAFESILKETDKVRE---EHDEDMSIQRAISIVFDRRPELRLEGLAHKVLQWYLCRMEGWFAADAETISLKSWDKEEL--LPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKGAAIDDLGVGIENK 786
            S  L   DG  V  +L   +   F ++L+   ++RE   +  E +S+   I  +  R  ++       +VL W+L  +E   A     +SL  WD+++   + G H  +  G   +++ L  G+ +     V +I     GV +TVEGG+ F AD  +   PLGVLK+R+I FEP LP+ K  AI  LG G+ NK
Sbjct:  245 SCPLYHHDGRTVDMKLDRSMDLVFNTLLEHATRLREYLKKAAEGISLGEGIERL-RRFYKVAKSVEEREVLDWHLANLEFSNAGCLSELSLAHWDQDDQYEMGGDHCFLAGGNARLVHALCDGVPVLYEKTVKRIEHGEDGVSITVEGGQVFKADMALCTAPLGVLKSRSIIFEPELPERKLEAIQRLGFGLLNK 438          
BLAST of EY711326 vs. ExPASy Swiss-Prot
Match: LDL2_ARATH (Lysine-specific histone demethylase 1 homolog 2 OS=Arabidopsis thaliana GN=LDL2 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.316e-16
Identity = 53/127 (41.73%), Postives = 71/127 (55.91%), Query Frame = 1
Query:  412 KVLQWYLCRMEGWFAADAETISLKSWDKEEL--LPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKGAAIDDLGVGIENK 786
            K+  W+L  +E   A     +S   WD+++   + G H  +  G   +IN LA+GL I  G  V  I     GV+V + G + F AD ++  VPLGVLK R+IKFEP LP  K AAID LG G+ NK
Sbjct:  311 KLFDWHLANLEYANAGCLSNLSAAYWDQDDPYEMGGDHCFLAGGNWRLINALAEGLPIIYGKSVDTIKYGDGGVEV-ISGSQIFQADMILCTVPLGVLKKRSIKFEPELPRRKQAAIDRLGFGLLNK 436          
BLAST of EY711326 vs. ExPASy Swiss-Prot
Match: KDM1B_MOUSE (Lysine-specific histone demethylase 1B OS=Mus musculus GN=Kdm1B PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.276e-14
Identity = 51/142 (35.92%), Postives = 71/142 (50.00%), Query Frame = 1
Query:  370 FDRRPELRLEGLAHKVLQWYLCRMEGWFAADAETISLKSWDKEELLP---GGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKGAAIDDLGVGIENK 786
            F +   ++   L  +VLQ++L  +E    +    +S +SWD  E      G H L+  GY  +I  LA+GLDIRL   V  I      V+VT   G    A  V+V VPL +L+   I+F P L + K  AI+ LG GI  K
Sbjct:  526 FVKESGIQFSELEGQVLQFHLSNLEYACGSSLHQVSARSWDHNEFFAQFAGDHTLLTPGYSTIIEKLAEGLDIRLKSPVQSIDYTGDEVQVTTTDGMGHSAQKVLVTVPLAILQRGAIQFNPPLSEKKMKAINSLGAGIIEK 667          
BLAST of EY711326 vs. ExPASy Swiss-Prot
Match: LDL1_ORYSJ (Lysine-specific histone demethylase 1 homolog 1 OS=Oryza sativa subsp. japonica GN=Os02g0755200 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.175e-13
Identity = 59/191 (30.89%), Postives = 90/191 (47.12%), Query Frame = 1
Query:  238 DGNQVPQELVTKVGEAFESILKETDKVRE------EHDEDMSIQRAISIVFDRRPELRLEGLAHKVLQWYLCRMEGWFAADAETISLKSWDKEEL--LPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKGAAIDDLGVGIENK 786
            DG  V  ++  +V  AF  +L +  ++R+       H  D+S+  A+   F     +  E     +L W+L  +E   AA    +S+  WD+++   + G H  +  G    +  LA G+ I  G  V +I     G  V  +  +TF  D V+  VPLGVLK   I+F P LP  K  AI+ LG G+ NK
Sbjct:  367 DGRPVDPDMDARVEAAFNQLLDKVCQLRQVVADSIPHGVDVSLGMALE-AFRAAHGVAAEREERMLLDWHLANLEYANAAPLVDLSMAFWDQDDPYEMGGDHCFIPGGNSRFVRALADGIPIFYGQNVRRIQYGCDGAMVYTDK-QTFRGDMVLCTVPLGVLKKGNIQFVPELPAQKREAIERLGFGLLNK 555          
BLAST of EY711326 vs. ExPASy Swiss-Prot
Match: LSDA_DROME (Possible lysine-specific histone demethylase 1 OS=Drosophila melanogaster GN=Su(var)3-3 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.420e-13
Identity = 57/172 (33.14%), Postives = 80/172 (46.51%), Query Frame = 1
Query:  328 HDEDMSIQRAISIVFDRRP-ELRLEGLAHKVLQWYLCRMEGWFAADAETISLKSWDKEELLP--GGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKT------FVADAVVVAVPLGVLK----------ARTIKFEPRLPDWKGAAIDDLGVGIENK 786
            H E+  +   +  +   RP ++ L      +L W+   +E   A     +SLK WD+++     G H  +  GY  V   L + LDIR+   V +I     GV+V  E  KT      + AD VV  + LGVLK          + T+KF+P LPDWK  AI  LG G  NK
Sbjct:  491 HAEEKQMLAKLHELEQNRPSDVYLSSRDRLILDWHFANLEFANATRLNNLSLKHWDQDDDFEFIGHHTTVRNGYSCVPVALTENLDIRVNSAVKEIKYGTKGVEVVAENLKTSNSQMTYKADLVVCTLTLGVLKVAVAHKESQQSNTVKFDPPLPDWKQQAIKRLGFGNLNK 662          
BLAST of EY711326 vs. ExPASy Swiss-Prot
Match: KDM1_MOUSE (Lysine-specific histone demethylase 1 OS=Mus musculus GN=Kdm1 PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 7.618e-13
Identity = 49/144 (34.03%), Postives = 76/144 (52.78%), Query Frame = 1
Query:  385 ELRLEGLAHKVLQWYLCRMEGWFAADAETISLKSWDKEE--LLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVKV----TVEGGKTFV--ADAVVVAVPLGVLKAR--TIKFEPRLPDWKGAAIDDLGVGIENK 786
            ++ L     ++L W+   +E   A    T+SLK WD+++     G H  +  GY  V   LA+GLDI+L   V ++     G +V    T    +TF+   DAV+  +PLGVLK +   ++F P LP+WK +A+  +G G  NK
Sbjct:  519 DVYLSSRDRQILDWHFANLEFANATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPVALAEGLDIKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTSAVQRMGFGNLNK 662          
BLAST of EY711326 vs. ExPASy Swiss-Prot
Match: KDM1_HUMAN (Lysine-specific histone demethylase 1 OS=Homo sapiens GN=KDM1 PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 7.618e-13
Identity = 49/144 (34.03%), Postives = 76/144 (52.78%), Query Frame = 1
Query:  385 ELRLEGLAHKVLQWYLCRMEGWFAADAETISLKSWDKEE--LLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVKV----TVEGGKTFV--ADAVVVAVPLGVLKAR--TIKFEPRLPDWKGAAIDDLGVGIENK 786
            ++ L     ++L W+   +E   A    T+SLK WD+++     G H  +  GY  V   LA+GLDI+L   V ++     G +V    T    +TF+   DAV+  +PLGVLK +   ++F P LP+WK +A+  +G G  NK
Sbjct:  518 DVYLSSRDRQILDWHFANLEFANATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPVALAEGLDIKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTSAVQRMGFGNLNK 661          
The following BLAST results are available for this feature:
BLAST of EY711326 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
PAO2_ARATH8.249e-8474.76Probable polyamine oxidase 2 OS=Arabidopsis thalia... [more]
PAO3_ARATH2.924e-8177.89Polyamine oxidase 3 OS=Arabidopsis thaliana GN=PAO... [more]
PAO4_ARATH4.127e-6864.92Probable polyamine oxidase 4 OS=Arabidopsis thalia... [more]
LDL2_ORYSJ2.989e-1731.79Lysine-specific histone demethylase 1 homolog 2 OS... [more]
LDL2_ARATH4.316e-1641.73Lysine-specific histone demethylase 1 homolog 2 OS... [more]
KDM1B_MOUSE5.276e-1435.92Lysine-specific histone demethylase 1B OS=Mus musc... [more]
LDL1_ORYSJ1.175e-1330.89Lysine-specific histone demethylase 1 homolog 1 OS... [more]
LSDA_DROME3.420e-1333.14Possible lysine-specific histone demethylase 1 OS=... [more]
KDM1_MOUSE7.618e-1334.03Lysine-specific histone demethylase 1 OS=Mus muscu... [more]
KDM1_HUMAN7.618e-1334.03Lysine-specific histone demethylase 1 OS=Homo sapi... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-006-D11-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711326 ID=EY711326; Name=EY711326; organism=Citrus sinensis; type=EST; length=875bp
CCACGCGTCCGCAACTTATGAAGTCCTTCACTTATGACATTGTGAAGCCT
TCTTCTGTGATTGTGTCAAGGTTTCATTTGTATCTTTATTAGACTTATTA
CCTTCTACAAAATTCCAAGTACAAATTTCCCTTTGTGTTTGCTGAATCTT
TTTTTTTTTAAATTAATTTGGAAGCAATTAATGTATGGCGTTGCTGAGGA
TATATATTCTTTTTGCAGTTATGCGCTCCTTGATATGGATGGGAATCAAG
TTCCTCAGGAGTTAGTCACAAAGGTTGGAGAAGCTTTTGAAAGCATTTTG
AAAGAGACGGACAAAGTAAGAGAAGAACATGATGAAGACATGTCCATACA
ACGCGCCATTTCTATTGTTTTTGATAGGAGGCCAGAATTAAGGTTGGAGG
GGCTTGCCCATAAGGTACTTCAATGGTACTTGTGCAGAATGGAAGGCTGG
TTTGCTGCAGATGCTGAGACAATATCACTTAAATCATGGGATAAGGAAGA
GCTGCTTCCTGGGGGTCATGGGCTTATGGTTCGGGGTTACCTACCGGTTA
TAAACACCCTTGCCAAAGGTCTTGACATTCGCTTAGGCCACAGGGTTACT
AAAATAACAAGGCATTATATTGGAGTGAAGGTAACAGTAGAAGGTGGAAA
GACATTTGTTGCAGATGCTGTTGTTGTTGCTGTTCCTCTTGGTGTGTTGA
AGGCGAGAACCATCAAGTTTGAACCTAGGCTCCCTGACTGGAAGGGAGCA
GCCATTGATGACCTTGGTGTGGGCATTGAGAATAAATAATAATGCATTTC
AACAAAGGTTTTGGCCAAATGTGGAGTTCTTGGGGTGGTTTCGATACATC
ATATGGGTGCACTACTTTCTAATCT
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