EY711322

Overview
NameEY711322
Unique NameEY711322
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length921
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9826 contig Csv1_Contig9826:393..1313. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY711322 vs. ExPASy Swiss-Prot
Match: SST2_SCHPO (AMSH-like protease sst2 OS=Schizosaccharomyces pombe GN=sst2 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.149e-14
Identity = 57/208 (27.40%), Postives = 99/208 (47.60%), Query Frame = 1
Query:  310 AEIKVHYPSSTDLTTTEDISLNQAGQYGIVPIKDGDPGGAISTMESVLSLDDGRWLHPAEKSCPPMVHEAREDPFQFVSTKQPSPPPVLAQVQQASIPPSRVADPRPGPAQDISLNT-----NEYQHLHVPVNMMQDFLRISSANTRKNLETCGVLAGSXKNRFFHITTLIIPKQEITSDSCQTLNEEEIFEVQDRLSLFP-SWLGSY 915
            +++++  PSSTDL + +   L+++     +P  D     +  T  S L +   R+   +      +  E  +D       K+P                +R ++PRP PA    ++         + +++P  + + FL +   NT+KNLETCG+L G  +   F IT L+IP QE TSD+C T +E  +FE QD+ +L    W+ ++
Sbjct:  152 SDLQILPPSSTDLLSPDSQKLSKSSSD--LPQFDYPSLNSSPTFNSNLPISSSRFEKTSLSDSKLVSPEPLDDNKDIQFIKKPIY--------------TRTSEPRPKPAGTFKIHAYTEGGKPLRTIYLPKLLKKVFLDVVKPNTKKNLETCGILCGKLRQNAFFITHLVIPLQEATSDTCGTTDEASLFEFQDKHNLLTLGWIHTH 343          
BLAST of EY711322 vs. ExPASy Swiss-Prot
Match: D1039_DICDI (Probable ubiquitin thiolesterase DG1039 OS=Dictyostelium discoideum GN=DG1039 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.927e-14
Identity = 39/102 (38.24%), Postives = 63/102 (61.76%), Query Frame = 1
Query:  574 LAQVQQASIPPSRVADPRPG-PAQDISLNTNEYQHLHVPVNMMQDFLRISSANTRKNLETCGVLAGSXKNRFFHITTLIIPKQEITSDSCQTLNEEEIFEVQ 876
            LAQ    + P       +P   + + S   ++ + + V   + Q+F+R++  NT++++ETCG+L+G+  N  F ITT+IIPKQE T+D+C T+ E EIFE Q
Sbjct:  502 LAQSPAVNTPSITPTTNKPNIDSSEASKKYSKLRKIIVHGEVFQEFMRLAENNTKRSIETCGILSGTLSNDVFRITTIIIPKQEGTTDTCNTIEEHEIFEYQ 603          

HSP 2 Score: 20.7866 bits (42), Expect = 3.927e-14
Identity = 6/20 (30.00%), Postives = 12/20 (60.00%), Query Frame = 2
Query:  860 KFLKFKIDYLFFPLGWDHTH 919
            +  +++++     LGW HTH
Sbjct:  598 EIFEYQLENDLLTLGWIHTH 617          
BLAST of EY711322 vs. ExPASy Swiss-Prot
Match: STABP_RAT (STAM-binding protein OS=Rattus norvegicus GN=Stambp PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.704e-14
Identity = 53/154 (34.42%), Postives = 79/154 (51.30%), Query Frame = 1
Query:  466 GRWLHPAEKSCPPMVHEAREDPFQFV---STKQPSPPPVLAQVQQASIPPSRVADPRPGPAQDISLNTNEYQHLHVPVNMMQDFLRISSANTRKNLETCGVLAGSXKNRFFHITTLIIPKQEITSDSCQTLNEEEIFEVQDRLSLFP-SWLGSY 915
            G  L   EK C  +   +   P Q     +T +P+ PPV+ +    S+ P  ++     P  +        +H+ VP N+  +FL+++SANT K +ETCGVL G      F IT ++IP+Q    D C T NEEEIF +QD L L    W+ ++
Sbjct:  194 GPLLPDLEKPCVDVAPSSPFSPTQTSDCNTTLRPAKPPVVDR----SLKPGALSVIENVPTIE------GLRHIVVPRNLCSEFLQLASANTAKGIETCGVLCGKLMRNEFTITHVLIPRQNGGPDYCHTENEEEIFFMQDDLGLLTLGWIHTH 337          
BLAST of EY711322 vs. ExPASy Swiss-Prot
Match: STABP_HUMAN (STAM-binding protein OS=Homo sapiens GN=STAMBP PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.449e-14
Identity = 44/125 (35.20%), Postives = 70/125 (56.00%), Query Frame = 1
Query:  544 STKQPSPPPVLAQVQQASIPPSRVADPRPGPAQDISLNTNEYQHLHVPVNMMQDFLRISSANTRKNLETCGVLAGSXKNRFFHITTLIIPKQEITSDSCQTLNEEEIFEVQDRLSLFP-SWLGSY 915
            +T +P+ PPV+ +    S+ P  +++    P  D        +H+ VP  +   FL+++SANT + +ETCG+L G      F IT ++IPKQ   SD C T NEEE+F +QD+  L    W+ ++
Sbjct:  223 TTVRPAKPPVVDR----SLKPGALSNSESIPTID------GLRHVVVPGRLCPQFLQLASANTARGVETCGILCGKLMRNEFTITHVLIPKQSAGSDYCNTENEEELFLIQDQQGLITLGWIHTH 337          
BLAST of EY711322 vs. ExPASy Swiss-Prot
Match: STABP_MOUSE (STAM-binding protein OS=Mus musculus GN=Stambp PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.271e-13
Identity = 51/145 (35.17%), Postives = 74/145 (51.03%), Query Frame = 1
Query:  502 PMVHEAREDPFQFVSTK------QPSPPPVLAQVQQASIPPSRVADPRPGPAQDISLNTNEYQHLHVPVNMMQDFLRISSANTRKNLETCGVLAGSXKNRFFHITTLIIPKQEITSDSCQTLNEEEIFEVQDRLSLFP-SWLGSY 915
            P V  A   PF    T       +P+ PPV+ +    S+ P  ++     P  +        +H+ VP N+  +FL+++SANT K +ETCGVL G      F IT ++IP+Q    D C T NEEEIF +QD L L    W+ ++
Sbjct:  203 PCVDVAPSSPFSPTQTPDCNTGMRPAKPPVVDR----SLKPGALSVIENVPTIE------GLRHIVVPRNLCSEFLQLASANTAKGIETCGVLCGKLMRNEFTITHVLIPRQNGGPDYCHTENEEEIFFMQDDLGLLTLGWIHTH 337          
BLAST of EY711322 vs. ExPASy Swiss-Prot
Match: STABP_XENLA (STAM-binding protein-like OS=Xenopus laevis GN=stambp PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.189e-11
Identity = 46/149 (30.87%), Postives = 70/149 (46.98%), Query Frame = 1
Query:  484 AEKSCPPMVHEAREDP----FQFVSTKQPSPPPVLAQVQQASIPPSRVADPRPGPAQDISLNTNEYQHLHVPVNMMQDFLRISSANTRKNLETCGVLAGSXKNRFFHITTLIIPKQEITSDSCQTLNEEEIFEVQDRLSLFP-SWLGSY 915
            AE    P++    E P         T QP PP V       S+ PS       G   D        +H+ +P ++   FL++S  NT++ +ETCG+L G      F +T +I+PKQ    D C T +EEE+F +QD+  L    W+ ++
Sbjct:  192 AEPLGSPLIPGMNEPPVTPLLPSYGTVQPHPPAV-----DRSLKPSSYGSNSSGVTSD------GLRHVKIPRDVCCKFLQLSENNTQRGVETCGILCGKLLQNEFTVTHVIVPKQSGGPDYCNTESEEELFLIQDQQGLITLGWIHTH 329          
BLAST of EY711322 vs. ExPASy Swiss-Prot
Match: STABP_DANRE (STAM-binding protein-like OS=Danio rerio GN=stambp PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 1.189e-11
Identity = 41/121 (33.88%), Postives = 59/121 (48.76%), Query Frame = 1
Query:  556 PSPPPVLAQVQQASIPPSRVADPRPGPAQDISLNTNEYQHLHVPVNMMQDFLRISSANTRKNLETCGVLAGSXKNRFFHITTLIIPKQEITSDSCQTLNEEEIFEVQDRLSLFP-SWLGSY 915
            P  PP  A   Q      R   P    +   S   N  + L VP  + Q FL+++  NT + +ETCG+L G      F +T +I+PKQ    D C T NEEE+F +QD+  L    W+ ++
Sbjct:  211 PQTPPAGATNHQGLPAFDRSLKPSVPVSAGHSALVNGLRQLFVPAELCQRFLKLAETNTARAVETCGILCGKLMKNAFTVTHVIVPKQCGGPDYCDTENEEELFLIQDQNDLITLGWIHTH 331          
The following BLAST results are available for this feature:
BLAST of EY711322 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
SST2_SCHPO1.149e-1427.40AMSH-like protease sst2 OS=Schizosaccharomyces pom... [more]
D1039_DICDI3.927e-1438.24Probable ubiquitin thiolesterase DG1039 OS=Dictyos... [more]
STABP_RAT5.704e-1434.42STAM-binding protein OS=Rattus norvegicus GN=Stamb... [more]
STABP_HUMAN7.449e-1435.20STAM-binding protein OS=Homo sapiens GN=STAMBP PE=... [more]
STABP_MOUSE1.271e-1335.17STAM-binding protein OS=Mus musculus GN=Stambp PE=... [more]
STABP_XENLA1.189e-1130.87STAM-binding protein-like OS=Xenopus laevis GN=sta... [more]
STABP_DANRE1.189e-1133.88STAM-binding protein-like OS=Danio rerio GN=stambp... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-702-006-D07-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711322 ID=EY711322; Name=EY711322; organism=Citrus sinensis; type=EST; length=921bp
CCACGCGTCCGTGAATTGATTATATTTGATGGCTCGGATAGGACCTCGAA
TGGTGCAGAAACATCTTCCTCGGAATGGCCTGTTTCCAATAAAAAACTAA
ACCTGAGAGTGGATTCGAAACAGCCTTCTAGTATGGAAATTCAGTCTTCT
TGGAGGAATAGTACACAAGTTTCATCTTCAAGTTCTTCACAAATTGACAA
GCAATTCCAGAAGCTATCTGTTAATATTCCTCTTCCAAAGAAAGAAACTC
TGTCCAGACACTCATTTCTAGGCCCTCATGGTCTTCGAGGCCAATGGCTT
GGCCCTAGTGCAGAGATAAAGGTTCACTATCCAAGCAGCACTGACCTAAC
CACTACTGAAGATATAAGCCTGAATCAGGCCGGACAATATGGTATTGTGC
CAATAAAAGATGGTGATCCTGGAGGAGCCATATCAACTATGGAGTCAGTT
CTTTCCTTGGACGATGGTAGATGGTTACATCCTGCTGAGAAGTCATGTCC
CCCAATGGTTCATGAAGCAAGGGAGGATCCCTTCCAGTTTGTCAGTACCA
AGCAACCTTCTCCTCCTCCCGTTCTTGCTCAAGTGCAGCAAGCTTCAATA
CCTCCATCCAGAGTGGCAGATCCAAGACCTGGCCCGGCTCAGGATATATC
ATTAAACACAAATGAATATCAGCATTTACATGTTCCAGTAAATATGATGC
AAGATTTTTTAAGAATTAGCTCAGCAAATACCCGAAAAAATTTAGAAACA
TGTGGTGTTCTTGCTGGATCGNTGAAAAACAGGTTTTTTCACATAACTAC
TCTCATTATCCCCAAGCAGGAAATCACTTCTGATTCGTGTCAGACATTGA
ATGAAGAAGAAATTTTTGAAGTTCAAGATAGATTATCTCTTTTTCCCTCT
TGGCTGGGATCATACACACCA
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