EY711310

Overview
NameEY711310
Unique NameEY711310
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length894
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY711310_ssr46 microsatellite EY711310_ssr46:46..57. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY711310 vs. ExPASy Swiss-Prot
Match: RK3_TOBAC (50S ribosomal protein L3, chloroplastic (Fragment) OS=Nicotiana tabacum GN=RPL3 PE=1 SV=1)

HSP 1 Score: 263.077 bits (671), Expect = 1.571e-69
Identity = 141/221 (63.80%), Postives = 164/221 (74.21%), Query Frame = 1
Query:  232 TTKRTTTHI----VSMSYEAGIGVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRXGAMTHGSKSHRQFGSIGAEHS-GPCIPGEEDAXKNGRXNXKIRKAQM*KL**PF-LCNDKRAVPGKPENL 876
            T K T+ HI    +S S EAG+GVM TKLGMMS+FE            FREGNIVTQ+KTEATDGY+AVQ+GYRRVRD+KLTKPE+GHL+KSG+IP+RHLQEFRLQSIDGFE  QKL F E+F EGDLVDVSGTTIGKGFQGGIKRHNF+ G MTHGSKSHRQ GSIGA  + G    G++   + G    KIRK ++ K+     +   K A+PGKP NL
Sbjct:   23 THKPTSLHISKSSISASLEAGVGVMATKLGMMSFFEESGTVVPVTVVGFREGNIVTQIKTEATDGYNAVQVGYRRVRDRKLTKPEMGHLEKSGIIPLRHLQEFRLQSIDGFEVTQKLDFGELFKEGDLVDVSGTTIGKGFQGGIKRHNFKRGQMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTKRKIRKLKIVKIDDQLNIIMIKGALPGKPGNL 243          
BLAST of EY711310 vs. ExPASy Swiss-Prot
Match: RK3A_ARATH (50S ribosomal protein L3-1, chloroplastic OS=Arabidopsis thaliana GN=RPL3A PE=1 SV=1)

HSP 1 Score: 258.07 bits (658), Expect = 5.053e-68
Identity = 144/238 (60.50%), Postives = 168/238 (70.59%), Query Frame = 1
Query:  175 FRPTRKASIL--ASPKQPLIFTTKRTTTHIVSMSYEAGIGVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRXGAMTHGSKSHRQFGSIGAEHS-GPCIPGEEDAXKNGRXNXKIRKAQM*KL**PF-LCNDKRAVPGKPENL 876
            F P + +S+L  +SPK          T  +VS S EAGIGVMG+KLGMMS+FE            FREGNIVTQ+KT ATDGYDAVQIGYRRVRDKKLTKPE GHLQK+G IPMRHLQEFRL +I+GFE  QKL F+EIF EGDLVDV+GTTIGKGFQGGIKRH+F+ G MTHGSKSHR  GSIGA  + G    G++   + G    KIRK ++ K+     +   K A+PGKP NL
Sbjct:   28 FLPAKSSSLLIKSSPK----------TRFVVSSSMEAGIGVMGSKLGMMSFFEEDGTVVPVTVVGFREGNIVTQIKTLATDGYDAVQIGYRRVRDKKLTKPETGHLQKAGTIPMRHLQEFRLTNIEGFEPNQKLVFDEIFKEGDLVDVAGTTIGKGFQGGIKRHHFKRGQMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMGGTRTKIRKLKIVKVDKELNVVMIKGALPGKPGNL 255          
BLAST of EY711310 vs. ExPASy Swiss-Prot
Match: RL3_MICAN (50S ribosomal protein L3 OS=Microcystis aeruginosa (strain NIES-843) GN=rplC PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 2.001e-40
Identity = 95/200 (47.50%), Postives = 124/200 (62.00%), Query Frame = 1
Query:  283 IGVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRXGAMTHGSKSHRQFGSIGAEHS-GPCIPGEEDAXKNGRXNXKIRKAQM*KL**P-FLCNDKRAVPGKPENL 876
            IG++GTKLGM   F+                  VTQVKT+ TDGY+++Q+GY+ V++K L KP LGHL K+G+ P+RHL E+RL+    +  GQ++   +IF EGDLVDV+GTTIG+GF G  KRHNF+ G MTHGSK+HR  GS GA  + G   PG+  A + G     IRK  + K+     L   K AVPGKP  L
Sbjct:    3 IGILGTKLGMTQIFDNKTGVAIPVTVVQAGPCPVTQVKTKKTDGYESIQVGYKTVKEKALNKPLLGHLAKAGVSPLRHLIEYRLEDASAYTLGQEIT-ADIFQEGDLVDVAGTTIGRGFSGYQKRHNFKRGNMTHGSKNHRLPGSTGAGTTPGRVFPGKRMAGQYGSTQVTIRKLSVVKIDSERNLILIKGAVPGKPGTL 201          
BLAST of EY711310 vs. ExPASy Swiss-Prot
Match: RL3_SYNP2 (50S ribosomal protein L3 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=rplC PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 8.406e-39
Identity = 91/200 (45.50%), Postives = 121/200 (60.50%), Query Frame = 1
Query:  283 IGVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRXGAMTHGSKSHRQFGSIGAEHS-GPCIPGEEDAXKNGRXNXKIRKAQM*KL-**PFLCNDKRAVPGKPENL 876
            +G++GTKLGM   F+                  VTQ+KT  TDGY +VQIGY  V++K LTKP+LGHL+K+   P+RHL+E+RL  + G+E GQ +    IF  G +VDVSG TIG+GF G  KRHNF+ G MTHGSK+HR  GS GA  + G   PG+  A + G     +RK ++ ++     L   K A+PGK  NL
Sbjct:    3 LGILGTKLGMTQIFDNETGTAIPVTVVQAGPCTVTQIKTSETDGYTSVQIGYGDVKEKNLTKPQLGHLKKADAAPLRHLKEYRLDDVSGYELGQAIT-ANIFEAGQVVDVSGNTIGRGFAGYQKRHNFKRGNMTHGSKNHRLPGSTGAGTTPGRVYPGKRMAGRYGGTKITVRKLEVVRVDEEKNLLLIKGAIPGKAGNL 201          
BLAST of EY711310 vs. ExPASy Swiss-Prot
Match: RL3_CYAP7 (50S ribosomal protein L3 OS=Cyanothece sp. (strain PCC 7424) GN=rplC PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.434e-38
Identity = 91/200 (45.50%), Postives = 124/200 (62.00%), Query Frame = 1
Query:  283 IGVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRXGAMTHGSKSHRQFGSIGAEHS-GPCIPGEEDAXKNGRXNXKIRKAQM*KL**P-FLCNDKRAVPGKPENL 876
            +G++GTKLGM   F+                  +TQVKT ATDGY+++QIGY  V++K L KP+LGHL+KS   P+RHL+E+RL++   ++ G  +   ++F  GDLVDV+G TIG+GF G  KRHNF+ G+MTHGSK+HR  GS GA  + G   PG+  A + G     IRK  + ++     L   K AVPGKP NL
Sbjct:    3 VGILGTKLGMTQIFDKETGIAIPVTVIHAGPCPITQVKTPATDGYNSIQIGYGEVKEKALNKPKLGHLKKSASTPVRHLKEYRLENAADYQLGDGIKV-DLFKPGDLVDVAGKTIGRGFAGYQKRHNFKRGSMTHGSKNHRLPGSTGAGTTPGRVYPGKRMAGRYGGTQVTIRKLTVVQIDTERNLILIKGAVPGKPGNL 201          
BLAST of EY711310 vs. ExPASy Swiss-Prot
Match: RL3_ACAM1 (50S ribosomal protein L3 OS=Acaryochloris marina (strain MBIC 11017) GN=rplC PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 5.449e-38
Identity = 92/198 (46.46%), Postives = 123/198 (62.12%), Query Frame = 1
Query:  283 IGVMGTKLGMMSYFEXXXXXXXXXXXXFREGNI-VTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRXGAMTHGSKSHRQFGSIGAEHS-GPCIPGEEDAXKNGRXNXKIRKAQM*KL**P-FLCNDKRAVPGKP 867
            +G++GTKLGM   F+             + G   VTQ+KT  TDGY A+QIGY    +K LT+PELGHL+KSG  P+RHLQE+RL  +  +E GQ ++  ++F+EG LVD+SGT+IG+GF G  KRHNFR G M HGSK+HR  GS GA  + G   PG+  A + G     IRK  + ++     +   K +VPGKP
Sbjct:    3 VGILGTKLGMTQVFDEAGRAIPVTVV--QAGPCPVTQIKTAQTDGYTAIQIGYGSTTEKALTRPELGHLKKSGSTPVRHLQEYRLADVSEYELGQSIS-ADLFSEGQLVDISGTSIGRGFAGYQKRHNFRRGPMGHGSKNHRAPGSTGAGTTPGRIYPGKRMAGQMGNVKKTIRKLTVVRVDAERNVLLIKGSVPGKP 197          
BLAST of EY711310 vs. ExPASy Swiss-Prot
Match: RK3_BIGNA (50S ribosomal protein L3, chloroplastic OS=Bigelowiella natans GN=RPL3 PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.585e-37
Identity = 86/203 (42.36%), Postives = 120/203 (59.11%), Query Frame = 1
Query:  283 IGVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIP-MRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRXGAMTHGSKSHRQFGSIGAEHSGPCI-PGEEDAXKNGRXNXKIRKAQM*KL**PFLCNDKR-------AVPGK 864
            +G+MGTK GM +Y++               GN+VTQVKT+ TDGYDAVQ+ Y+  RD+ +  PE  HL+K G +  M+HL+EF++  +  F  GQ+L  EE+F  GDLVDVSGT+ GKGFQG I+R   + G M+HGSKSHRQ GSIG   +   +  G + A + G     ++K  +       + ND+        +VPGK
Sbjct:   89 MGLMGTKAGMTTYYDDEGIAHPVTVIALEAGNVVTQVKTKETDGYDAVQLAYKETRDRTIPWPERQHLRKHGNVKAMKHLKEFKIADVSEFTPGQQLKAEELFEVGDLVDVSGTSSGKGFQGSIRRWGMKRGPMSHGSKSHRQHGSIGCSATPSRVYKGLKMAGRMGNERKTVKKLPV------MMVNDEEKYIVVRGSVPGK 285          
BLAST of EY711310 vs. ExPASy Swiss-Prot
Match: RL3_CYAA5 (50S ribosomal protein L3 OS=Cyanothece sp. (strain ATCC 51142) GN=rplC PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 4.613e-37
Identity = 89/200 (44.50%), Postives = 121/200 (60.50%), Query Frame = 1
Query:  283 IGVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRXGAMTHGSKSHRQFGSIGAEHS-GPCIPGEEDAXKNGRXNXKIRKAQM*KL**P-FLCNDKRAVPGKPENL 876
            +G++GTKLGM   FE                  +TQ+KT  TDGY A+QIGY  V++K LTKPELGHL+K    P+RHL+E+R+     +  G+ +   +IFN GDLVD++GT++G+GF G  KRHNF+ G+MTHGSK+HR  GS GA  + G   PG++ A + G      R  Q+ ++     L   K AVPGKP  L
Sbjct:    3 VGLLGTKLGMTQIFEEESGLAIPVTVVQAGPCTITQIKTAETDGYSAIQIGYLEVKEKALTKPELGHLKKVEASPLRHLKEYRVDDTATYTLGEAVK-ADIFNAGDLVDIAGTSMGRGFAGYQKRHNFKRGSMTHGSKNHRLPGSTGAGTTPGRVYPGKKMAGQYGAVKTTTRHLQVVRVDAERNLLLIKGAVPGKPGGL 201          
BLAST of EY711310 vs. ExPASy Swiss-Prot
Match: RL3_THEEB (50S ribosomal protein L3 OS=Thermosynechococcus elongatus (strain BP-1) GN=rplC PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 2.289e-36
Identity = 89/197 (45.18%), Postives = 118/197 (59.90%), Query Frame = 1
Query:  283 IGVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRXGAMTHGSKSHRQFGSIGAEHS-GPCIPGEEDAXKNGRXNXKIRKAQM*KL**P-FLCNDKRAVPGKP 867
            +G++GTKLGM   F+                 I TQ+KT  TDGY A+Q+ Y  VR+K L++PE GHL KS   PMRHL+EFRL+ +  ++ GQ +   +IF+ G LVDV GT+IG+GF G  KRHNF+ G M HGSK+HR  GS GA  + G   PG+  A + G     IRK Q+ ++     L   K A+PGKP
Sbjct:    3 VGILGTKLGMTQIFDEAGRSVPITVVQAGPCPI-TQIKTPQTDGYTAIQVAYGEVREKNLSRPERGHLNKSQTPPMRHLREFRLEDVSAYQLGQAITV-DIFSPGQLVDVRGTSIGRGFAGYQKRHNFKRGPMAHGSKNHRLPGSTGAGTTPGRVFPGKRMAGRMGNTAVTIRKLQVMRVDPERNLILIKGALPGKP 197          
BLAST of EY711310 vs. ExPASy Swiss-Prot
Match: RL3_SYNY3 (50S ribosomal protein L3 OS=Synechocystis sp. (strain PCC 6803) GN=rplC PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 3.905e-36
Identity = 89/200 (44.50%), Postives = 120/200 (60.00%), Query Frame = 1
Query:  283 IGVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRXGAMTHGSKSHRQFGSIGAEHS-GPCIPGEEDAXKNGRXNXKIRKAQM*KL**P-FLCNDKRAVPGKPENL 876
            IG++GTKLGM   F+                  VTQVKT+ TDGY+A+Q+G+  V++K L+KPELGHL+KS   PMRHL+E+RL      + G  +   +IF  GDLVDV+G ++G+GF G  KRHNFR G MTHGSK+HR  GS GA  + G   PG+  A + G     +R+  + ++     L   K A+PGKP  L
Sbjct:    3 IGILGTKLGMTQIFDQESGISIPVTVVQAGPCPVTQVKTQDTDGYNAIQVGFLPVKEKALSKPELGHLKKSNTDPMRHLKEYRLTDAPNLQPGDAVT-ADIFQAGDLVDVAGQSMGRGFAGYQKRHNFRRGNMTHGSKNHRLPGSTGAGTTPGRVYPGKRMAGQYGASQVTVRRLTVVRVDAERNLLIIKGALPGKPGTL 201          
The following BLAST results are available for this feature:
BLAST of EY711310 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK3_TOBAC1.571e-6963.8050S ribosomal protein L3, chloroplastic (Fragment)... [more]
RK3A_ARATH5.053e-6860.5050S ribosomal protein L3-1, chloroplastic OS=Arabi... [more]
RL3_MICAN2.001e-4047.5050S ribosomal protein L3 OS=Microcystis aeruginosa... [more]
RL3_SYNP28.406e-3945.5050S ribosomal protein L3 OS=Synechococcus sp. (str... [more]
RL3_CYAP71.434e-3845.5050S ribosomal protein L3 OS=Cyanothece sp. (strain... [more]
RL3_ACAM15.449e-3846.4650S ribosomal protein L3 OS=Acaryochloris marina (... [more]
RK3_BIGNA1.585e-3742.3650S ribosomal protein L3, chloroplastic OS=Bigelow... [more]
RL3_CYAA54.613e-3744.5050S ribosomal protein L3 OS=Cyanothece sp. (strain... [more]
RL3_THEEB2.289e-3645.1850S ribosomal protein L3 OS=Thermosynechococcus el... [more]
RL3_SYNY33.905e-3644.5050S ribosomal protein L3 OS=Synechocystis sp. (str... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-006-C05-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711310 ID=EY711310; Name=EY711310; organism=Citrus sinensis; type=EST; length=894bp
CCACGCGTCCGTTTTGTAAACTCTGAAGCTCAGACTCTCATAATCTCATT
CATTCATTCTTCTCCTCATTCTTCTTCTTGAAAGTTGAAACAATCACTCA
ATCAAATGCCAATCTCTTCACTTTCACCAATTGGGCACTGTCCTCCATCT
CTATCTCTGAAATGCAACTTCCCATTTCGCCCCACAAGAAAGGCCTCAAT
TCTTGCCTCGCCCAAGCAGCCTCTCATTTTTACCACCAAAAGAACCACAA
CCCACATAGTTTCAATGAGCTACGAGGCGGGAATTGGCGTAATGGGCACC
AAGCTAGGCATGATGTCGTACTTCGAGCCCGACGGAACTGTTGTTCCGGT
GACTGTAGTTGGGTTCAGAGAAGGGAACATTGTGACCCAGGTTAAGACTG
AAGCCACTGACGGGTACGACGCCGTTCAGATTGGTTATAGGAGAGTAAGG
GACAAGAAGCTGACGAAACCTGAGCTGGGTCACTTGCAAAAGTCTGGGTT
AATACCCATGAGGCATTTGCAGGAGTTTAGGTTACAGTCTATTGATGGGT
TTGAGGCTGGCCAAAAGTTGGCTTTTGAAGAGATTTTTAATGAAGGGGAT
CTTGTCGATGTTTCTGGGACTACTATTGGCAAGGGTTTTCAAGGTGGCAT
TAAGCGGCACAATTTCAGAANGGGTGCGATGACCCATGGNTCTAAGAGTC
ATAGACAATTTGGGTCCATTGGTGCTGAACACTCCGGNCCGTGTATACCA
GGGGAAGAAGATGCCTGNAAGAATGGGAGGNACAACANGAAGATCAGAAA
AGCTCAGATGTAAAAATTGTAATGACCNTTCCTGTGTAATGATAAAAGGG
CTGTTCCTGGAAAGCCCGAAAATCTCTGCGTGTAGCACAGCTAG
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