EY711290

Overview
NameEY711290
Unique NameEY711290
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length163
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9021 contig Csv1_Contig9021:25..187. BLAST: Citrus Unigene V1 Contigs to SwissProt
Homology
BLAST of EY711290 vs. ExPASy Swiss-Prot
Match: AROA_RHILW (3-phosphoshikimate 1-carboxyvinyltransferase OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=aroA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.619e-13
Identity = 34/52 (65.38%), Postives = 40/52 (76.92%), Query Frame = 1
Query:    7 DLTLDCMRVFGAQVDIVDESTWRVAPTGYTAHDYLIEPDASAATYLWAAEVL 162
            DLT   M+ FGA+V+     TWRV PTGY A D+++EPDASAATYLWAAEVL
Sbjct:  204 DLTTAAMKAFGAKVEKTSPVTWRVEPTGYRAADFIVEPDASAATYLWAAEVL 255          
BLAST of EY711290 vs. ExPASy Swiss-Prot
Match: AROA_RHIEC (3-phosphoshikimate 1-carboxyvinyltransferase OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=aroA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.619e-13
Identity = 35/52 (67.31%), Postives = 40/52 (76.92%), Query Frame = 1
Query:    7 DLTLDCMRVFGAQVDIVDESTWRVAPTGYTAHDYLIEPDASAATYLWAAEVL 162
            DLT   M+ FGA+V+     TWRV PTGY A D++IEPDASAATYLWAAEVL
Sbjct:  204 DLTTAAMKAFGAKVEKTSPVTWRVEPTGYRAADFVIEPDASAATYLWAAEVL 255          
BLAST of EY711290 vs. ExPASy Swiss-Prot
Match: AROA_RHIE6 (3-phosphoshikimate 1-carboxyvinyltransferase OS=Rhizobium etli (strain CIAT 652) GN=aroA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.619e-13
Identity = 35/52 (67.31%), Postives = 40/52 (76.92%), Query Frame = 1
Query:    7 DLTLDCMRVFGAQVDIVDESTWRVAPTGYTAHDYLIEPDASAATYLWAAEVL 162
            DLT   M+ FGA+V+     TWRV PTGY A D++IEPDASAATYLWAAEVL
Sbjct:  204 DLTTAAMKAFGARVEKTSPVTWRVEPTGYRAADFVIEPDASAATYLWAAEVL 255          
BLAST of EY711290 vs. ExPASy Swiss-Prot
Match: AROA_PSEU2 (3-phosphoshikimate 1-carboxyvinyltransferase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=aroA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.370e-12
Identity = 32/52 (61.54%), Postives = 40/52 (76.92%), Query Frame = 1
Query:    7 DLTLDCMRVFGAQVDIVDESTWRVAPTGYTAHDYLIEPDASAATYLWAAEVL 162
            DLTL  MR FGA+V  + ++ W+V+ TGY A D+ IEPDASAATYLWAA+ L
Sbjct:  204 DLTLAAMRAFGAEVQAIGDAAWKVSATGYRATDFHIEPDASAATYLWAAQAL 255          
BLAST of EY711290 vs. ExPASy Swiss-Prot
Match: AROA_PSE14 (3-phosphoshikimate 1-carboxyvinyltransferase OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=aroA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.790e-12
Identity = 32/52 (61.54%), Postives = 40/52 (76.92%), Query Frame = 1
Query:    7 DLTLDCMRVFGAQVDIVDESTWRVAPTGYTAHDYLIEPDASAATYLWAAEVL 162
            DLTL  M+ FGA+V  + E+ W+V+ TGY A D+ IEPDASAATYLWAA+ L
Sbjct:  204 DLTLAAMQAFGAEVQAIGETAWKVSATGYRATDFHIEPDASAATYLWAAQAL 255          
BLAST of EY711290 vs. ExPASy Swiss-Prot
Match: AROA_PSESM (3-phosphoshikimate 1-carboxyvinyltransferase OS=Pseudomonas syringae pv. tomato GN=aroA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.208e-12
Identity = 31/52 (59.62%), Postives = 40/52 (76.92%), Query Frame = 1
Query:    7 DLTLDCMRVFGAQVDIVDESTWRVAPTGYTAHDYLIEPDASAATYLWAAEVL 162
            DLTL  M+ FGA+V  + ++ W+V+ TGY A D+ IEPDASAATYLWAA+ L
Sbjct:  204 DLTLAAMQAFGAEVQAIGDAAWKVSATGYHATDFHIEPDASAATYLWAAQAL 255          
The following BLAST results are available for this feature:
BLAST of EY711290 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
AROA_RHILW1.619e-1365.383-phosphoshikimate 1-carboxyvinyltransferase OS=Rh... [more]
AROA_RHIEC1.619e-1367.313-phosphoshikimate 1-carboxyvinyltransferase OS=Rh... [more]
AROA_RHIE61.619e-1367.313-phosphoshikimate 1-carboxyvinyltransferase OS=Rh... [more]
AROA_PSEU21.370e-1261.543-phosphoshikimate 1-carboxyvinyltransferase OS=Ps... [more]
AROA_PSE141.790e-1261.543-phosphoshikimate 1-carboxyvinyltransferase OS=Ps... [more]
AROA_PSESM5.208e-1259.623-phosphoshikimate 1-carboxyvinyltransferase OS=Ps... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-702-006-A07-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711290 ID=EY711290; Name=EY711290; organism=Citrus sinensis; type=EST; length=163bp
TGTGCCGACCTGACCCTGGACTGCATGCGCGTCTTCGGTGCCCAGGTGGA
CATCGTTGATGAAAGCACCTGGCGCGTGGCCCCGACCGGCTACACCGCCC
ACGATTACCTGATCGAACCTGACGCTTCCGCCGCCACCTACTTGTGGGCT
GCCGAAGTGTTGA
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