EY711284

Overview
NameEY711284
Unique NameEY711284
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length914
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY711284 vs. ExPASy Swiss-Prot
Match: LHY_ARATH (Protein LHY OS=Arabidopsis thaliana GN=LHY PE=1 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 4.184e-25
Identity = 86/250 (34.40%), Postives = 118/250 (47.20%), Query Frame = 2 
Query:   53 NQDETRESYVTVELKANEKFGKPDAKLALQDNGSSKPLNLENACPSHEKSVHGEKRDDVADALPTAEVQATQNYPRHVNVHILDGSLGTGTQS-PSDMPMQESIFHPIGE-VHGNPNLFTNPAASATTENESNVPKSTHQSFPTFHPPFTQFRHDQDDYRSFLYISSAFSSLIVSTLLQNPXXXXXXXXXXTFWPYTNMETSADSPTCPQGGFLSRQMSSPPSMXXXXXXXXXXXXXXXXXHGLLPLCAP 796
            NQDE      TV      K+  P  +++  D  +SK   ++NA     K    +  +D         V + QNYP H +  I++G++    Q+ PS M  Q+ +FHP+ E  HG+ NL    A++ TT        ++HQ+FP  H         QDDYRSFL ISS FS+LI+STLLQNP          + WPY ++  S DS T           SSPPS+                 HGLLP+CAP
Sbjct:  157 NQDENCSGVSTVN-----KYPLPTKQVS-GDIETSKTSTVDNAVQDVPKKNKDKDGND------GTTVHSMQNYPWHFHADIVNGNIAKCPQNHPSGMVSQDFMFHPMREETHGHANLQATTASATTT--------ASHQAFPACH--------SQDDYRSFLQISSTFSNLIMSTLLQNPAAHAAATFAASVWPYASVGNSGDSST--------PMSSSPPSITAIAAATVAAATAWWASHGLLPVCAP 370
The following BLAST results are available for this feature:
BLAST of EY711284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
LHY_ARATH4.184e-2534.40Protein LHY OS=Arabidopsis thaliana GN=LHY PE=1 SV... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-702-005-H12-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711284 ID=EY711284; Name=EY711284; organism=Citrus sinensis; type=EST; length=914bp
CCACGCGTCCGGCAATCTCAGGGAATTTGTTCCATCACTGAAAGAAGTGG
TAAATCAGGATGAAACACGTGAATCTTATGTCACTGTTGAACTTAAAGCA
AATGAGAAGTTTGGTAAACCTGATGCCAAACTGGCACTTCAGGATAATGG
CTCAAGTAAACCCTTGAACTTGGAGAACGCCTGCCCTTCACATGAGAAGT
CAGTTCATGGTGAAAAAAGAGATGATGTGGCCGATGCATTGCCGACGGCT
GAGGTGCAAGCTACGCAGAACTATCCAAGGCACGTAAATGTGCACATTCT
AGATGGGAGCCTTGGAACAGGTACTCAAAGCCCTTCAGATATGCCTATGC
AGGAGTCCATATTTCATCCTATAGGAGAAGTTCATGGAAATCCTAATCTG
TTCACAAATCCAGCTGCGTCTGCTACTACTGAAAATGAGAGTAATGTGCC
AAAATCTACTCATCAATCATTTCCAACTTTCCATCCTCCCTTTACCCAAT
TTCGCCATGATCAAGATGACTATCGATCATTTCTATACATCTCATCCGCA
TTTTCAAGTCTTATAGTGTCTACTCTGTTACAAAACCCTGCGGCCCATGC
TGCAGCAAGCTTTGCTGCTACATTTTGGCCCTATACAAATATGGAAACTT
CAGCTGATTCTCCTACATGTCCGCAGGGTGGTTTCTTATCTAGACAAATG
AGCTCCCCGCCAAGTATGGCAGCTATTGCCGCAGCCACTGTAGCAGCTGC
CACTGCATGGTGGGCAGCACATGGACTGCTTCCCTTGTGTGCCCCATTTC
ATACTCCTTTTACTGCCCCCCTGCTTGTGCACTGCAGTTTCTCGATGGAT
ACTGCACAAGTTCCGGCAGCCAGACAGACAAAATGACATACTCTTCCAAT
CCGGCCTTAAGGAC
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