EY711280

Overview
NameEY711280
Unique NameEY711280
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length282
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8592 contig Csv1_Contig8592:1..280. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of EY711280 vs. ExPASy Swiss-Prot
Match: ATPBM_HEVBR (ATP synthase subunit beta, mitochondrial OS=Hevea brasiliensis GN=ATPB PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 5.446e-46
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 2
Query:    8 SGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGG 280
            SGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGG
Sbjct:  284 SGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGG 374          
BLAST of EY711280 vs. ExPASy Swiss-Prot
Match: ATPBM_ORYSJ (ATP synthase subunit beta, mitochondrial OS=Oryza sativa subsp. japonica GN=ATPB PE=1 SV=2)

HSP 1 Score: 179.874 bits (455), Expect = 3.530e-45
Identity = 89/91 (97.80%), Postives = 91/91 (100.00%), Query Frame = 2
Query:    8 SGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGG 280
            SGVIKLGDKQ++SKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGG
Sbjct:  274 SGVIKLGDKQSESKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGG 364          
BLAST of EY711280 vs. ExPASy Swiss-Prot
Match: ATPBM_NICPL (ATP synthase subunit beta, mitochondrial OS=Nicotiana plumbaginifolia GN=ATPB PE=1 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 1.027e-44
Identity = 88/91 (96.70%), Postives = 91/91 (100.00%), Query Frame = 2
Query:    8 SGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGG 280
            SGVIKLG+KQ++SKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGG
Sbjct:  282 SGVIKLGEKQSESKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGG 372          
BLAST of EY711280 vs. ExPASy Swiss-Prot
Match: ATPBM_MAIZE (ATP synthase subunit beta, mitochondrial OS=Zea mays GN=ATPB PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 2.288e-44
Identity = 88/91 (96.70%), Postives = 90/91 (98.90%), Query Frame = 2
Query:    8 SGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGG 280
            SGVIKL DKQ++SKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGG
Sbjct:  275 SGVIKLDDKQSESKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGG 365          
BLAST of EY711280 vs. ExPASy Swiss-Prot
Match: ATPBO_ARATH (ATP synthase subunit beta-3, mitochondrial OS=Arabidopsis thaliana GN=At5g08680 PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 7.361e-43
Identity = 85/90 (94.44%), Postives = 90/90 (100.00%), Query Frame = 2
Query:    8 SGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 277
            SGVIKLG+KQ++SKCALVYGQMNEPPGARARVGLTGLTVAE+FRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLA+DLG
Sbjct:  281 SGVIKLGEKQSESKCALVYGQMNEPPGARARVGLTGLTVAEYFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLASDLG 370          
BLAST of EY711280 vs. ExPASy Swiss-Prot
Match: ATPBN_ARATH (ATP synthase subunit beta-2, mitochondrial OS=Arabidopsis thaliana GN=At5g08690 PE=1 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 7.361e-43
Identity = 85/90 (94.44%), Postives = 90/90 (100.00%), Query Frame = 2
Query:    8 SGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 277
            SGVIKLG+KQ++SKCALVYGQMNEPPGARARVGLTGLTVAE+FRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLA+DLG
Sbjct:  278 SGVIKLGEKQSESKCALVYGQMNEPPGARARVGLTGLTVAEYFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLASDLG 367          
BLAST of EY711280 vs. ExPASy Swiss-Prot
Match: ATPBM_ARATH (ATP synthase subunit beta-1, mitochondrial OS=Arabidopsis thaliana GN=At5g08670 PE=1 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 7.361e-43
Identity = 85/90 (94.44%), Postives = 90/90 (100.00%), Query Frame = 2
Query:    8 SGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 277
            SGVIKLG+KQ++SKCALVYGQMNEPPGARARVGLTGLTVAE+FRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLA+DLG
Sbjct:  278 SGVIKLGEKQSESKCALVYGQMNEPPGARARVGLTGLTVAEYFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLASDLG 367          
BLAST of EY711280 vs. ExPASy Swiss-Prot
Match: ATPBM_DAUCA (ATP synthase subunit beta, mitochondrial OS=Daucus carota GN=ATPB PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 9.614e-43
Identity = 84/91 (92.31%), Postives = 89/91 (97.80%), Query Frame = 2
Query:    8 SGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGG 280
            SGVIKLGD+QA+SKCALVYGQMNEPPG+RARVGLTGLTVAEHFRDAEG+DVLLF+D  FRFTQANSEVSALLGRIPSAVGYQPTLATDLGG
Sbjct:  270 SGVIKLGDQQAESKCALVYGQMNEPPGSRARVGLTGLTVAEHFRDAEGEDVLLFVDKRFRFTQANSEVSALLGRIPSAVGYQPTLATDLGG 360          
BLAST of EY711280 vs. ExPASy Swiss-Prot
Match: ATPBM_CHLRE (ATP synthase subunit beta, mitochondrial OS=Chlamydomonas reinhardtii GN=ATP2 PE=1 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 3.653e-42
Identity = 83/91 (91.21%), Postives = 87/91 (95.60%), Query Frame = 2
Query:    8 SGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGG 280
            SGVIKLGDK+ +SKC LVYGQMNEPPGARARV LTGLTVAE+FRD EGQDVLLF+DNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGG
Sbjct:  230 SGVIKLGDKRGESKCTLVYGQMNEPPGARARVALTGLTVAEYFRDVEGQDVLLFVDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGG 320          
BLAST of EY711280 vs. ExPASy Swiss-Prot
Match: ATPB_SCHGA (ATP synthase subunit beta, mitochondrial (Fragment) OS=Schizaphis graminum PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 2.294e-36
Identity = 79/90 (87.78%), Postives = 81/90 (90.00%), Query Frame = 2
Query:    8 SGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 277
            SGVI L DK   SK ALVYGQMNEPPGARARV LTGLTVAE+FRD EGQDVLLFIDNIFRFTQA SEVSALLGRIPSAVGYQPTLATD+G
Sbjct:   40 SGVISLKDKT--SKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMG 127          
The following BLAST results are available for this feature:
BLAST of EY711280 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPBM_HEVBR5.446e-46100.00ATP synthase subunit beta, mitochondrial OS=Hevea ... [more]
ATPBM_ORYSJ3.530e-4597.80ATP synthase subunit beta, mitochondrial OS=Oryza ... [more]
ATPBM_NICPL1.027e-4496.70ATP synthase subunit beta, mitochondrial OS=Nicoti... [more]
ATPBM_MAIZE2.288e-4496.70ATP synthase subunit beta, mitochondrial OS=Zea ma... [more]
ATPBO_ARATH7.361e-4394.44ATP synthase subunit beta-3, mitochondrial OS=Arab... [more]
ATPBN_ARATH7.361e-4394.44ATP synthase subunit beta-2, mitochondrial OS=Arab... [more]
ATPBM_ARATH7.361e-4394.44ATP synthase subunit beta-1, mitochondrial OS=Arab... [more]
ATPBM_DAUCA9.614e-4392.31ATP synthase subunit beta, mitochondrial OS=Daucus... [more]
ATPBM_CHLRE3.653e-4291.21ATP synthase subunit beta, mitochondrial OS=Chlamy... [more]
ATPB_SCHGA2.294e-3687.78ATP synthase subunit beta, mitochondrial (Fragment... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-005-H08-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711280 ID=EY711280; Name=EY711280; organism=Citrus sinensis; type=EST; length=282bp
CCACGCGTCCGGTGTTATTAAGCTAGGGGACAAGCAGGCTGACAGCAAAT
GTGCACTTGTCTATGGTCAAATGAATGAGCCACCCGGTGCTCGTGCTCGT
GTGGGTCTGACTGGGCTTACTGTTGCCGAGCACTTCCGTGATGCTGAGGG
GCAAGATGTGCTGCTCTTCATCGACAACATTTTCCGTTTCACCCAAGCTA
ACTCAGAGGTGTCTGCTTTGCTTGGTCGTATCCCATCTGCTGTCGGTTAC
CAACCAACGTTGGCTACGGATCTTGGAGGCCT
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