EY711258

Overview
NameEY711258
Unique NameEY711258
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length869
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY711258 vs. ExPASy Swiss-Prot
Match: RCE1_ARATH (NEDD8-conjugating enzyme Ubc12 OS=Arabidopsis thaliana GN=RCE1 PE=1 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 7.972e-47
Identity = 103/161 (63.98%), Postives = 117/161 (72.67%), Query Frame = 3
Query:  102 MIKLFKVKEKQRENAENAN-GKTPVKKQSAGELRLHRDISELNLPKTCSITFPHGKDDLMNFEVSIXPDEGYYVGGTFVVTFQGSPIYPHXAPKVKCQTKVYHP-IST*RERLANIFRKDWEPGL-IYTPSLWTLPLFTPPHMRNPSILKHNC---LKDNP 566
            MI LFKVKEKQRE A+NA  G   VKKQSAGELRLH+DISELNLP +CSI+FP+GKDDLMNFEVSI PD+GYY  GTFV TFQ SP+YPH APKVKC+TKVYHP I        NI R+DW+P L I T       LFT P+  +P  L H+    L+DNP
Sbjct:    1 MIGLFKVKEKQREQAQNATRGGASVKKQSAGELRLHKDISELNLPSSCSISFPNGKDDLMNFEVSIKPDDGYYHNGTFVFTFQVSPVYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTVIYGLFHLFTEPNSEDP--LNHDAAAVLRDNP 159          
BLAST of EY711258 vs. ExPASy Swiss-Prot
Match: UB12L_ARATH (Probable NEDD8-conjugating enzyme Ubc12-like OS=Arabidopsis thaliana GN=RCE2 PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 6.317e-44
Identity = 97/162 (59.88%), Postives = 117/162 (72.22%), Query Frame = 3
Query:  102 MIKLFKVKEKQRENAENANGK--TPVKKQSAGELRLHRDISELNLPKTCSITFPHGKDDLMNFEVSIXPDEGYYVGGTFVVTFQGSPIYPHXAPKVKCQTKVYHP-IST*RERLANIFRKDWEPGL-IYTPSLWTLPLFTPPHMRNPSILKHNC---LKDNP 566
            MI LFKVKEKQRE +++ NG+  + VKKQSAGELRLH+DISELNLPK+C I+FP+GK+DLMNFEV+I PDEGYY+ G FV +FQ S +YPH APKVKC+TKVYHP I        NI R+DW+P L I T       LFT P+  +P  L H     L+DNP
Sbjct:    1 MIGLFKVKEKQREESQSNNGRGASTVKKQSAGELRLHKDISELNLPKSCKISFPNGKNDLMNFEVTIKPDEGYYLSGNFVFSFQVSNMYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTVIYGLFHLFTEPNYEDP--LNHEAAAVLRDNP 160          
BLAST of EY711258 vs. ExPASy Swiss-Prot
Match: UBC12_XENTR (NEDD8-conjugating enzyme Ubc12 OS=Xenopus tropicalis GN=ube2m PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.670e-28
Identity = 68/145 (46.90%), Postives = 90/145 (62.07%), Query Frame = 3
Query:  102 MIKLFKVKEKQRENAENANGKTPVKKQSAGELRLHRDISELNLPKTCSITFPHGKDDLMNFEVSIXPDEGYYVGGTFVVTFQGSPIYPHXAPKVKCQTKVYHP-IST*RERLANIFRKDWEPGLIYTPSLWTLP-LFTPPHMRNP 530
            MIKLF +K++++E       K   KK SA +LR+ +DI+ELNLPKTC I F    DDL+NF++ I PDEG+Y GG FV +F+    YPH  PKVKC+T VYHP I        NI R+DW+P L     ++ L  LF  P+  +P
Sbjct:    1 MIKLFSLKQQKKEEESAGGTKGSSKKASAAQLRIQKDINELNLPKTCEIEFSD-HDDLLNFKLVICPDEGFYKGGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDP 144          
BLAST of EY711258 vs. ExPASy Swiss-Prot
Match: UBC12_XENLA (NEDD8-conjugating enzyme Ubc12 OS=Xenopus laevis GN=ube2m PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.670e-28
Identity = 68/145 (46.90%), Postives = 90/145 (62.07%), Query Frame = 3
Query:  102 MIKLFKVKEKQRENAENANGKTPVKKQSAGELRLHRDISELNLPKTCSITFPHGKDDLMNFEVSIXPDEGYYVGGTFVVTFQGSPIYPHXAPKVKCQTKVYHP-IST*RERLANIFRKDWEPGLIYTPSLWTLP-LFTPPHMRNP 530
            MIKLF +K++++E       K   KK SA +LR+ +DI+ELNLPKTC I F    DDL+NF++ I PDEG+Y GG FV +F+    YPH  PKVKC+T VYHP I        NI R+DW+P L     ++ L  LF  P+  +P
Sbjct:    1 MIKLFSLKQQKKEEESAGGTKGSSKKASAAQLRIQKDITELNLPKTCEIEFSD-HDDLLNFKLVICPDEGFYKGGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDP 144          
BLAST of EY711258 vs. ExPASy Swiss-Prot
Match: UBC12_MOUSE (NEDD8-conjugating enzyme Ubc12 OS=Mus musculus GN=Ube2m PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.859e-28
Identity = 67/145 (46.21%), Postives = 90/145 (62.07%), Query Frame = 3
Query:  102 MIKLFKVKEKQRENAENANGKTPVKKQSAGELRLHRDISELNLPKTCSITFPHGKDDLMNFEVSIXPDEGYYVGGTFVVTFQGSPIYPHXAPKVKCQTKVYHP-IST*RERLANIFRKDWEPGLIYTPSLWTLP-LFTPPHMRNP 530
            MIKLF +K++++E       K   KK SA +LR+ +DI+ELNLPKTC I+F    DDL+NF++ I PDEG+Y  G FV +F+    YPH  PKVKC+T VYHP I        NI R+DW+P L     ++ L  LF  P+  +P
Sbjct:    1 MIKLFSLKQQKKEEESAGGTKGSSKKASAAQLRIQKDINELNLPKTCDISFSD-PDDLLNFKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDP 144          
BLAST of EY711258 vs. ExPASy Swiss-Prot
Match: UBC12_HUMAN (NEDD8-conjugating enzyme Ubc12 OS=Homo sapiens GN=UBE2M PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.859e-28
Identity = 67/145 (46.21%), Postives = 90/145 (62.07%), Query Frame = 3
Query:  102 MIKLFKVKEKQRENAENANGKTPVKKQSAGELRLHRDISELNLPKTCSITFPHGKDDLMNFEVSIXPDEGYYVGGTFVVTFQGSPIYPHXAPKVKCQTKVYHP-IST*RERLANIFRKDWEPGLIYTPSLWTLP-LFTPPHMRNP 530
            MIKLF +K++++E       K   KK SA +LR+ +DI+ELNLPKTC I+F    DDL+NF++ I PDEG+Y  G FV +F+    YPH  PKVKC+T VYHP I        NI R+DW+P L     ++ L  LF  P+  +P
Sbjct:    1 MIKLFSLKQQKKEEESAGGTKGSSKKASAAQLRIQKDINELNLPKTCDISFSD-PDDLLNFKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDP 144          
BLAST of EY711258 vs. ExPASy Swiss-Prot
Match: UBC12_BOVIN (NEDD8-conjugating enzyme Ubc12 OS=Bos taurus GN=UBE2M PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.859e-28
Identity = 67/145 (46.21%), Postives = 90/145 (62.07%), Query Frame = 3
Query:  102 MIKLFKVKEKQRENAENANGKTPVKKQSAGELRLHRDISELNLPKTCSITFPHGKDDLMNFEVSIXPDEGYYVGGTFVVTFQGSPIYPHXAPKVKCQTKVYHP-IST*RERLANIFRKDWEPGLIYTPSLWTLP-LFTPPHMRNP 530
            MIKLF +K++++E       K   KK SA +LR+ +DI+ELNLPKTC I+F    DDL+NF++ I PDEG+Y  G FV +F+    YPH  PKVKC+T VYHP I        NI R+DW+P L     ++ L  LF  P+  +P
Sbjct:    1 MIKLFSLKQQKKEEESAGGTKGSSKKASAAQLRIQKDINELNLPKTCDISFSD-PDDLLNFKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDP 144          
BLAST of EY711258 vs. ExPASy Swiss-Prot
Match: UBC12_DROME (NEDD8-conjugating enzyme Ubc12 OS=Drosophila melanogaster GN=CG7375 PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 6.567e-25
Identity = 63/145 (43.45%), Postives = 89/145 (61.38%), Query Frame = 3
Query:  102 MIKLFKVKEKQRENAENANGKTPVKKQSAGELRLHRDISELNLPKTCSITFPHGKDDLMNFEVSIXPDEGYYVGGTFVVTFQGSPIYPHXAPKVKCQTKVYHP-IST*RERLANIFRKDWEPGLIYTPSLWTLP-LFTPPHMRNP 530
            MIKLF +K+++++  +  + +   KK SA +LR+ +DI+ELNLP TC+  FP   +DL+NF++ I PDEG+Y  G FV  F+    YPH  PKVKC T+VYHP I        NI R+DW P L     ++ L  LF  P+  +P
Sbjct:    1 MIKLFTLKQQKKDGEQKGSQQ---KKASAAQLRIQKDINELNLPNTCATDFPD-PNDLLNFKLIISPDEGFYRDGRFVFNFRVGSNYPHEPPKVKCATQVYHPNIDLDGNVCLNILREDWNPVLNINSIVYGLQFLFLEPNPEDP 141          
BLAST of EY711258 vs. ExPASy Swiss-Prot
Match: UBC12_YARLI (NEDD8-conjugating enzyme UBC12 OS=Yarrowia lipolytica GN=UBC12 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.239e-23
Identity = 62/145 (42.76%), Postives = 87/145 (60.00%), Query Frame = 3
Query:  102 MIKLFKVKEKQRENAENANGKTPVKKQSAGELRLHRDISELNLPKTCSITFPHGKDDLMNFEVSIXPDEGYYVGGTFVVTFQGSPIYPHXAPKVKCQTKVYHP-IST*RERLANIFRKDWEPGLIYTPSLWTLP-LFTPPHMRNP 530
            M+K++ +KEKQ      A G +  KK +A +LR+ +D+SEL+LP T    FP   +D+MNFE+++ PDEG+Y GG F  +F  +P +PH  PKVKC  KVYHP I        NI R+DW+P L     +  L  LF  P+  +P
Sbjct:    1 MLKIWSMKEKQA-----AEGGSAKKKVTAAQLRVQKDLSELSLPSTMKTHFPSA-EDIMNFELTVRPDEGFYQGGEFRFSFYVNPNFPHEPPKVKCLQKVYHPNIDLEGNVCLNILREDWKPVLSLNAVMIGLQYLFLEPNASDP 139          
BLAST of EY711258 vs. ExPASy Swiss-Prot
Match: UBC12_SCHPO (NEDD8-conjugating enzyme ubc12 OS=Schizosaccharomyces pombe GN=ubc12 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.732e-17
Identity = 54/146 (36.99%), Postives = 82/146 (56.16%), Query Frame = 3
Query:  102 MIKLFKVKEKQRENAENANGKTPVKKQSAGELRLHRDISELNLPKTCSITFPHG-KDDLMNFEVSIXPDEGYYVGGTFVVTFQGSPIYPHXAPKVKCQTKVYHP-IST*RERLANIFRKDWEPGLIYTPSLWTLP-LFTPPHMRNP 530
            M K++++K+K+ +  +NA+G +P       ++R+ +D+++L +P T S ++P   K ++++ E  I PDEGYY GG F    Q    YPH  PKVKC  K+YHP I        NI R+DW P L     L  L  LF  P+  +P
Sbjct:    1 MRKIWELKKKEAQKEKNASGISPA------QIRIQKDVTDLEIPSTMSTSWPDPIKLNVLHLE--IRPDEGYYKGGKFKFRIQIDDNYPHDPPKVKCLNKIYHPNIDIEGNVCLNILRQDWNPVLNLNSILVGLQFLFLSPNAEDP 138          
The following BLAST results are available for this feature:
BLAST of EY711258 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
RCE1_ARATH7.972e-4763.98NEDD8-conjugating enzyme Ubc12 OS=Arabidopsis thal... [more]
UB12L_ARATH6.317e-4459.88Probable NEDD8-conjugating enzyme Ubc12-like OS=Ar... [more]
UBC12_XENTR1.670e-2846.90NEDD8-conjugating enzyme Ubc12 OS=Xenopus tropical... [more]
UBC12_XENLA1.670e-2846.90NEDD8-conjugating enzyme Ubc12 OS=Xenopus laevis G... [more]
UBC12_MOUSE4.859e-2846.21NEDD8-conjugating enzyme Ubc12 OS=Mus musculus GN=... [more]
UBC12_HUMAN4.859e-2846.21NEDD8-conjugating enzyme Ubc12 OS=Homo sapiens GN=... [more]
UBC12_BOVIN4.859e-2846.21NEDD8-conjugating enzyme Ubc12 OS=Bos taurus GN=UB... [more]
UBC12_DROME6.567e-2543.45NEDD8-conjugating enzyme Ubc12 OS=Drosophila melan... [more]
UBC12_YARLI1.239e-2342.76NEDD8-conjugating enzyme UBC12 OS=Yarrowia lipolyt... [more]
UBC12_SCHPO1.732e-1736.99NEDD8-conjugating enzyme ubc12 OS=Schizosaccharomy... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-005-F08-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711258 ID=EY711258; Name=EY711258; organism=Citrus sinensis; type=EST; length=869bp
CCACGCGTCCGCACTCGCTCTCTATCAGAGGAGCACGCTTTCAGATTCCA
ACGCGACCAAGAAGAACAAATCCCCTGCAGCTTAACTCTTAAGCAGGAAA
AATGATTAAGCTGTTCAAAGTCAAGGAGAAGCAAAGGGAAAATGCCGAAA
ATGCCAATGGGAAGACACCTGTCAAGAAGCAAAGTGCTGGAGAATTGCGT
CTTCATAGAGACATCAGTGAACTGAACCTACCCAAAACTTGCAGCATAAC
ATTTCCCCATGGCAAGGATGACTTGATGAACTTCGAGGTTTCCATTANGC
CTGACGAAGGATATTATGTAGGTGGTACATTTGTGGTTACTTTCCAAGGA
TCTCCCATCTACCCTCATGANGCACCCAAAGTCAAATGCCAGACAAAGGT
TTACCACCCAATATCGACCTGAAGGGAACGTCTGGCTAACATTTTTAGAA
AAGACTGGGAACCGGGTCTGATATATACACCCTCATTATGGACTCTTCCA
CTCTTCACGCCACCCCATATGAGGAACCCCTCAATCCTGAAACACAACTG
TTTAAAGGATAACCCCAACTGTTTAATCCCCTGTTAAAAAACAATGGGTG
GTGGTATTTGGGGCAAACCTCTTCCTTTGGGGAAATATTGCTTTTTCCCG
AAAAAACAGTTCTTTTAAGGAAAAAGCTTTTAATTTTGTGCCCGGGGGCT
TCAATTCTTAAAGGGGGGGGGCGAAAAATTTTAAATATCCCAAGGGGGCC
CCAAGGTTGTTGCCCCCGAAACCTCTTGGGGGGTGGGAAAATGGCGAAAA
AAAATATTTCCCCCTTTTTAAAGAGCGTTTGGGGGGGGNAAAATATAAAA
CANCAAAAACAAAAAAAAA
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