EY711246

Overview
NameEY711246
Unique NameEY711246
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length892
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY711246_ssr95 microsatellite EY711246_ssr95:95..109. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10527 contig Csv1_Contig10527:1..892. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY711246 vs. ExPASy Swiss-Prot
Match: ORN_ARATH (Oligoribonuclease OS=Arabidopsis thaliana GN=At2g26970 PE=2 SV=2)

HSP 1 Score: 283.878 bits (725), Expect = 8.552e-76
Identity = 132/178 (74.16%), Postives = 157/178 (88.20%), Query Frame = 2
Query:  203 EYKMPLVWIDLEMTGLNIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTKKVLHSGLTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMRWYPRDYRKVPSKEQKHRALDDIRESIMETQYYKENIF 736
            +YK PLVWIDLEMTGLN+EVDRILEIACIIT+G LT+SVEGPDLV+ QTK+CLD M +WCQ HH ASGLTKKVL S +TEREAE++V+EFVKK+VG+  PLLAGNSVYVDF+FLKKYMP+LA+LF H+LVDVSS+KALC RW+P + RK P+K+  HRA+DDIRESI E +YYK+ IF
Sbjct:   41 DYKQPLVWIDLEMTGLNVEVDRILEIACIITNGDLTQSVEGPDLVVRQTKDCLDKMDDWCQTHHGASGLTKKVLLSAITEREAEQKVIEFVKKHVGSGNPLLAGNSVYVDFLFLKKYMPELAALFPHILVDVSSVKALCARWFPIERRKAPAKKNNHRAMDDIRESIKELKYYKKTIF 218          
BLAST of EY711246 vs. ExPASy Swiss-Prot
Match: ORN_HUMAN (Oligoribonuclease, mitochondrial OS=Homo sapiens GN=REXO2 PE=1 SV=3)

HSP 1 Score: 188.348 bits (477), Expect = 4.890e-47
Identity = 90/177 (50.85%), Postives = 118/177 (66.67%), Query Frame = 2
Query:  218 LVWIDLEMTGLNIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTKKVLHSGLTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMRWYPRDYRKVPSKEQKHRALDDIRESIMETQYYKENIFXNKL 748
            +VW+DLEMTGL+IE D+I+E+AC+ITD  L    EGP+L+I Q  E LDSM +WC+ HH  SGLTK V  S +T ++AE + + FV++        LAGNSV+ D  FL KYMP       + ++DVS++K LC RWYP +Y   P K   HRALDDI ESI E Q+Y+ NIF  K+
Sbjct:   43 MVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCKEHHGKSGLTKAVKESTITLQQAEYEFLSFVRQQTPPGLCPLAGNSVHEDKKFLDKYMPQFMKHLHYRIIDVSTVKELCRRWYPEEYEFAPKKAASHRALDDISESIKELQFYRNNIFKKKI 219          
BLAST of EY711246 vs. ExPASy Swiss-Prot
Match: ORN_BOVIN (Oligoribonuclease, mitochondrial OS=Bos taurus GN=REXO2 PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 4.890e-47
Identity = 90/176 (51.14%), Postives = 117/176 (66.48%), Query Frame = 2
Query:  218 LVWIDLEMTGLNIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTKKVLHSGLTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMRWYPRDYRKVPSKEQKHRALDDIRESIMETQYYKENIFXNK 745
            +VW+DLEMTGL+IE D+I+E+AC+ITD  L    EGP+L+I Q  E LDSM +WC+ HH  SGLTK V  S +T ++AE + + FV++        LAGNSV+ D  FL KYMP       + ++DVS++K LC RWYP +Y   P K   HRALDDI ESI E Q+Y+ NIF  K
Sbjct:   43 MVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCKEHHGKSGLTKAVKESTMTLQQAEYEFLSFVRQQTPPGLCPLAGNSVHADKKFLDKYMPQFMKHLHYRIIDVSTVKELCRRWYPEEYEFAPKKAASHRALDDISESIKELQFYRNNIFKKK 218          
BLAST of EY711246 vs. ExPASy Swiss-Prot
Match: ORN_RAT (Oligoribonuclease, mitochondrial OS=Rattus norvegicus GN=Rexo2 PE=2 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 8.341e-47
Identity = 90/176 (51.14%), Postives = 117/176 (66.48%), Query Frame = 2
Query:  218 LVWIDLEMTGLNIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTKKVLHSGLTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMRWYPRDYRKVPSKEQKHRALDDIRESIMETQYYKENIFXNK 745
            +VW+DLEMTGL+IE D+I+E+AC+ITD  L    EGP+L+I Q  E LDSM +WC+ HH  SGLTK V  S +T ++AE + + FV++        LAGNSV+ D  FL K+MP       + ++DVS++K LC RWYP DY   P K   HRALDDI ESI E Q+Y+ NIF  K
Sbjct:   43 MVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCKEHHGKSGLTKAVKESTVTLQQAEYEFLSFVRQQTPPGLCPLAGNSVHADKKFLDKHMPQFMKHLHYRIIDVSTVKELCRRWYPEDYEFAPKKAASHRALDDISESIKELQFYRNNIFKKK 218          
BLAST of EY711246 vs. ExPASy Swiss-Prot
Match: ORN_MOUSE (Oligoribonuclease, mitochondrial OS=Mus musculus GN=Rexo2 PE=1 SV=2)

HSP 1 Score: 187.578 bits (475), Expect = 8.341e-47
Identity = 90/176 (51.14%), Postives = 117/176 (66.48%), Query Frame = 2
Query:  218 LVWIDLEMTGLNIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTKKVLHSGLTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMRWYPRDYRKVPSKEQKHRALDDIRESIMETQYYKENIFXNK 745
            +VW+DLEMTGL+IE D+I+E+AC+ITD  L    EGP+L+I Q  E LDSM +WC+ HH  SGLTK V  S +T ++AE + + FV++        LAGNSV+ D  FL K+MP       + ++DVS++K LC RWYP DY   P K   HRALDDI ESI E Q+Y+ NIF  K
Sbjct:   43 MVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCKEHHGKSGLTKAVKESTVTLQQAEYEFLSFVRQQTPPGLCPLAGNSVHADKKFLDKHMPQFMKHLHYRIIDVSTVKELCRRWYPEDYEFAPKKAASHRALDDISESIKELQFYRNNIFKKK 218          
BLAST of EY711246 vs. ExPASy Swiss-Prot
Match: ORN_DROME (Probable oligoribonuclease OS=Drosophila melanogaster GN=CG10214 PE=1 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.990e-40
Identity = 83/173 (47.98%), Postives = 108/173 (62.43%), Query Frame = 2
Query:  218 LVWIDLEMTGLNIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTKKVLHSGLTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMRWYPRDYRKVPSKEQKHRALDDIRESIMETQYYKENIF 736
            +VW+DLEMTGL+IE D+ILE+ACIITD  L    EGP   I+  +E  DSM EWC  HH  SGL  +   S +   EA   V+ +++KN+      L GNSVY D +F+ K+MP + +   + +VDVS+IK L  RW+P      P K   HR+LDDIRESI E  YYK N+F
Sbjct:   38 IVWMDLEMTGLDIEKDKILEVACIITDQDLNVKSEGPCFAINHPQEVYDSMNEWCMKHHYNSGLIDRCKSSDVNLEEASNLVLSYLEKNIPKRACPLGGNSVYTDRLFIMKFMPLVDAYLHYRIVDVSTIKELAKRWHPAILDSAPKKSFTHRSLDDIRESIKELAYYKANLF 210          
BLAST of EY711246 vs. ExPASy Swiss-Prot
Match: ORN_PASMU (Oligoribonuclease OS=Pasteurella multocida GN=orn PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 4.433e-40
Identity = 90/179 (50.28%), Postives = 114/179 (63.69%), Query Frame = 2
Query:  209 KMPLVWIDLEMTGLNIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTKKVLHSGLTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMRWYPRDYRKVPSKEQKHRALDDIRESIMETQYYKENIFXNK 745
            K  L+WIDLEMTGL+ E +RI+EIA I+TD  L    EGP L IHQ+ ECL  M +WC   H  +GL ++V +S LTER AE Q ++F+KK V      + GNSV  D  FL KYMP+LA  F +  +DVS++K L  RW P D  K  +K+  H ALDDIRESI E  YY+E+    K
Sbjct:    5 KQNLIWIDLEMTGLDPESERIIEIATIVTDKHLNILAEGPVLAIHQSDECLAKMNDWCMKTHTENGLVERVKNSRLTERAAELQTLDFLKKWVPKGVSPICGNSVSQDKRFLFKYMPELADYFHYRHLDVSTLKELASRWKP-DVLKGFTKKNTHLALDDIRESIAELAYYREHFINLK 182          
BLAST of EY711246 vs. ExPASy Swiss-Prot
Match: ORN_HAEIG (Oligoribonuclease OS=Haemophilus influenzae (strain PittGG) GN=orn PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.873e-39
Identity = 87/174 (50.00%), Postives = 112/174 (64.37%), Query Frame = 2
Query:  209 KMPLVWIDLEMTGLNIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTKKVLHSGLTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMRWYPRDYRKVPSKEQKHRALDDIRESIMETQYYKEN 730
            K  L+WIDLEMTGL+ E +RI+EIA I+TD  L    EGP L +HQ+ E L+ M +WCQ  H  +GL ++V  S LTER AE Q ++F+KK V      + GNS+  D  FL KYMPDLA  F +  +DVS++K L  RW P +  +   KE  H ALDDIRESI E  YY+E+
Sbjct:    5 KQNLIWIDLEMTGLDPEKERIIEIATIVTDKNLNILAEGPVLAVHQSDELLNKMNDWCQKTHSENGLIERVKASKLTERAAELQTLDFLKKWVPKGASPICGNSIAQDKRFLVKYMPDLADYFHYRHLDVSTLKELAARWKP-EILEGFKKENTHLALDDIRESIKELAYYREH 177          
BLAST of EY711246 vs. ExPASy Swiss-Prot
Match: ORN_HAEIE (Oligoribonuclease OS=Haemophilus influenzae (strain PittEE) GN=orn PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.873e-39
Identity = 87/174 (50.00%), Postives = 112/174 (64.37%), Query Frame = 2
Query:  209 KMPLVWIDLEMTGLNIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTKKVLHSGLTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMRWYPRDYRKVPSKEQKHRALDDIRESIMETQYYKEN 730
            K  L+WIDLEMTGL+ E +RI+EIA I+TD  L    EGP L +HQ+ E L+ M +WCQ  H  +GL ++V  S LTER AE Q ++F+KK V      + GNS+  D  FL KYMPDLA  F +  +DVS++K L  RW P +  +   KE  H ALDDIRESI E  YY+E+
Sbjct:    5 KQNLIWIDLEMTGLDPEKERIIEIATIVTDKNLNILAEGPVLAVHQSDELLNKMNDWCQKTHSENGLIERVKASKLTERAAELQTLDFLKKWVPKGASPICGNSIAQDKRFLVKYMPDLADYFHYRHLDVSTLKELAARWKP-EILEGFKKENTHLALDDIRESIKELAYYREH 177          
BLAST of EY711246 vs. ExPASy Swiss-Prot
Match: ORN_HAEI8 (Oligoribonuclease OS=Haemophilus influenzae (strain 86-028NP) GN=orn PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.873e-39
Identity = 87/174 (50.00%), Postives = 112/174 (64.37%), Query Frame = 2
Query:  209 KMPLVWIDLEMTGLNIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTKKVLHSGLTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMRWYPRDYRKVPSKEQKHRALDDIRESIMETQYYKEN 730
            K  L+WIDLEMTGL+ E +RI+EIA I+TD  L    EGP L +HQ+ E L+ M +WCQ  H  +GL ++V  S LTER AE Q ++F+KK V      + GNS+  D  FL KYMPDLA  F +  +DVS++K L  RW P +  +   KE  H ALDDIRESI E  YY+E+
Sbjct:    5 KQNLIWIDLEMTGLDPEKERIIEIATIVTDKNLNILAEGPVLAVHQSDELLNKMNDWCQKTHSENGLIERVKASKLTERAAELQTLDFLKKWVPKGASPICGNSIAQDKRFLVKYMPDLADYFHYRHLDVSTLKELAARWKP-EILEGFKKENTHLALDDIRESIKELAYYREH 177          
The following BLAST results are available for this feature:
BLAST of EY711246 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
ORN_ARATH8.552e-7674.16Oligoribonuclease OS=Arabidopsis thaliana GN=At2g2... [more]
ORN_HUMAN4.890e-4750.85Oligoribonuclease, mitochondrial OS=Homo sapiens G... [more]
ORN_BOVIN4.890e-4751.14Oligoribonuclease, mitochondrial OS=Bos taurus GN=... [more]
ORN_RAT8.341e-4751.14Oligoribonuclease, mitochondrial OS=Rattus norvegi... [more]
ORN_MOUSE8.341e-4751.14Oligoribonuclease, mitochondrial OS=Mus musculus G... [more]
ORN_DROME1.990e-4047.98Probable oligoribonuclease OS=Drosophila melanogas... [more]
ORN_PASMU4.433e-4050.28Oligoribonuclease OS=Pasteurella multocida GN=orn ... [more]
ORN_HAEIG2.873e-3950.00Oligoribonuclease OS=Haemophilus influenzae (strai... [more]
ORN_HAEIE2.873e-3950.00Oligoribonuclease OS=Haemophilus influenzae (strai... [more]
ORN_HAEI82.873e-3950.00Oligoribonuclease OS=Haemophilus influenzae (strai... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-005-E08-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711246 ID=EY711246; Name=EY711246; organism=Citrus sinensis; type=EST; length=892bp
CCACGCGTCCGATGGACTCTCAAATGCATTCTCTGTGTTAGAGCTGGACG
CTGACGACAGTCAAGTCAAAACGCCTGCTGCTGCTTCTTCTTCCTCTTCT
TCTTCTTCTTCCTGCAAATCAGTTGAGAGCAAAAGCAAAGCAAACAGCTC
TAGCAATTTGACTCTTGAAAACCAACAAAATTCTCAGACTCCCTTGGAAT
TTGAGTACAAAATGCCCCTTGTGTGGATTGACTTGGAAATGACAGGTTTG
AATATTGAAGTTGATCGAATACTGGAGATTGCTTGCATAATTACTGATGG
CAAGTTGACAAAATCAGTGGAGGGACCTGATTTGGTTATCCATCAAACTA
AAGAGTGTTTAGATAGCATGGGTGAATGGTGTCAAAATCATCATGAAGCT
AGTGGATTGACAAAAAAGGTGCTTCATAGTGGCCTGACTGAAAGAGAAGC
TGAAAAGCAGGTTGTAGAATTTGTCAAGAAAAATGTTGGTACATACACTC
CTCTTCTTGCAGGGAATTCAGTATACGTGGATTTTATGTTCTTAAAGAAA
TACATGCCAGACTTAGCTAGTCTTTTCTCTCATGTACTTGTCGATGTTAG
CAGTATCAAGGCTTTATGTATGCGCTGGTATCCTAGAGATTACAGGAAAG
TTCCTTCAAAAGAACAGAAACACAGAGCCTTGGATGATATCAGAGAAAGC
ATCATGGAAACTCAGTACTACAAGGAGAATATATTTANNAACAAATTGAA
GAAGTGATGCAAATACNATACAGATTGATTTGAGGGGTATTNCATTTCTT
TCACGCCATTCTAAGTCCGAGCTTTTGCCTCTAGGTTTTTGAAATAGGGG
CTAGTTTTTGTAAGTACATCTTTCCTTTTAAATCCTAGTGAG
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