EY711225

Overview
NameEY711225
Unique NameEY711225
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length652
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12567 contig Csv1_Contig12567:969..1620. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY711225 vs. ExPASy Swiss-Prot
Match: THI4_CITSI (Thiazole biosynthetic enzyme, chloroplastic OS=Citrus sinensis GN=THI1 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 8.706e-36
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 1
Query:   10 REVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELILAAADSAETAD 234
            REVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELILAAADSAETAD
Sbjct:  281 REVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELILAAADSAETAD 355          
BLAST of EY711225 vs. ExPASy Swiss-Prot
Match: THI4_ALNGL (Thiazole biosynthetic enzyme, chloroplastic OS=Alnus glutinosa GN=THI4 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.096e-33
Identity = 69/75 (92.00%), Postives = 73/75 (97.33%), Query Frame = 1
Query:   10 REVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELILAAADSAETAD 234
            RE+VPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK+LG PNALDG+YVGG+HPELILAAADSAE AD
Sbjct:  277 REIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGLPNALDGSYVGGIHPELILAAADSAEIAD 351          
BLAST of EY711225 vs. ExPASy Swiss-Prot
Match: THI4_ARATH (Thiazole biosynthetic enzyme, chloroplastic OS=Arabidopsis thaliana GN=THI1 PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.077e-29
Identity = 64/75 (85.33%), Postives = 68/75 (90.67%), Query Frame = 1
Query:   10 REVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELILAAADSAETAD 234
            REVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKA  LALK+LG PNA+DGT VG + PEL+LAAADSAET D
Sbjct:  274 REVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAGQLALKALGLPNAIDGTLVGNLSPELVLAAADSAETVD 348          
BLAST of EY711225 vs. ExPASy Swiss-Prot
Match: THI41_MAIZE (Thiazole biosynthetic enzyme 1-1, chloroplastic OS=Zea mays GN=THI1-1 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 7.645e-24
Identity = 55/69 (79.71%), Postives = 61/69 (88.41%), Query Frame = 1
Query:   10 REVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELILAAAD 216
            REVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK+LG+PNA+DGT    +  EL++A  D
Sbjct:  280 REVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGRPNAVDGTMSPPLREELMIAYKD 348          
BLAST of EY711225 vs. ExPASy Swiss-Prot
Match: THI42_MAIZE (Thiazole biosynthetic enzyme 1-2, chloroplastic OS=Zea mays GN=THI1-2 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.104e-22
Identity = 56/73 (76.71%), Postives = 63/73 (86.30%), Query Frame = 1
Query:   10 REVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHP----ELILAAAD 216
            REVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK+LG+PNA+DGT +  V P    E ++A+ D
Sbjct:  277 REVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGRPNAVDGT-IPEVSPALREEFVIASKD 348          
BLAST of EY711225 vs. ExPASy Swiss-Prot
Match: THI4_UROFA (Thiazole biosynthetic enzyme, mitochondrial OS=Uromyces fabae GN=THI2 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.935e-12
Identity = 32/59 (54.24%), Postives = 47/59 (79.66%), Query Frame = 1
Query:    4 RVREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVG 180
            + RE++PG+IV GME++E DG+ RMGPTFGAM++SG++AA +AL+SL +    +G  VG
Sbjct:  277 KTREILPGLIVGGMELSEFDGSARMGPTFGAMLLSGKRAAEVALQSLDRVKIEEGEVVG 335          
The following BLAST results are available for this feature:
BLAST of EY711225 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
THI4_CITSI8.706e-36100.00Thiazole biosynthetic enzyme, chloroplastic OS=Cit... [more]
THI4_ALNGL3.096e-3392.00Thiazole biosynthetic enzyme, chloroplastic OS=Aln... [more]
THI4_ARATH2.077e-2985.33Thiazole biosynthetic enzyme, chloroplastic OS=Ara... [more]
THI41_MAIZE7.645e-2479.71Thiazole biosynthetic enzyme 1-1, chloroplastic OS... [more]
THI42_MAIZE1.104e-2276.71Thiazole biosynthetic enzyme 1-2, chloroplastic OS... [more]
THI4_UROFA3.935e-1254.24Thiazole biosynthetic enzyme, mitochondrial OS=Uro... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-702-005-C09-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711225 ID=EY711225; Name=EY711225; organism=Citrus sinensis; type=EST; length=652bp
CCACGCGTCCGGGAGGTTGTGCCTGGTATGATAGTTACCGGCATGGAAGT
TGCCGAGATTGATGGTGCTCCTAGAATGGGGCCAACATTTGGAGCAATGA
TGATATCGGGGCAGAAGGCTGCGCATTTGGCGTTGAAGTCACTGGGCCAG
CCGAATGCATTAGACGGTACATATGTGGGAGGTGTTCACCCTGAGCTGAT
CTTAGCTGCAGCTGATTCTGCTGAGACTGCTGATGGTTAATTTGATAATA
ACAGGCATCATCACTCATCAGCTGTGTGCATGCAAATAAACTCTGGCAAA
AAAGTAGTTGTATTTAGGTGGTTGTGATGGATGGTTGATGCGAATAATGA
GATGATGTTGTGAGGTTTTGTGAATAAAGTGTTTGTTTCCGGTCCATCAT
GCAACCTTTAATTTTAATTTCTTTCTCCTCTTGTAAGAAACCGTTGTGAG
TTTTTCGGGGGTGAATTTGCAGTTGCGTATCTAGTCCTTGTTATCTGTAT
TATGTGTAAGACTGCCCTTGGGCTGTTCCCTTTTCTTTGCTTTGTATGTT
TATAACTTGAGGCATCAGCCAATGGGACAGTGCTGATGTGATTAAGATCA
ATGATGAAGATCTGAGCTTACTCTGAAAAAAAAAAAAAAAAAAAAAAAAA
AA
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