EY711213

Overview
NameEY711213
Unique NameEY711213
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length893
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY711213_ssr55 microsatellite EY711213_ssr55:55..68. BLAST: Citrus ESTs to Prunus persica proteins V1
EY711213_ssr69 microsatellite EY711213_ssr69:69..80. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY711213 vs. ExPASy Swiss-Prot
Match: DFRA_ARATH (Dihydroflavonol-4-reductase OS=Arabidopsis thaliana GN=DFRA PE=2 SV=2)

HSP 1 Score: 54.6842 bits (130), Expect = 5.491e-12
Identity = 42/130 (32.31%), Postives = 57/130 (43.85%), Query Frame = 2
Query:  278 EEKLVCVTSGVSFLGLAIVNCLLLRGYAVRILI-DHXXXXXXXXXXXXXTCSNSVSVVTAKLTEADDLTAAFEGCRGVFHTSALADPAGLSGYSKSMAEVEVKTTEN----VMKACARASSVRNCVLTSS 652
            +++ VCVT    F+G  +V  LL RGY VR  + D                   +++  A L+E      A  GC GVFH +   D       SK      +K T N    +MKAC +A +VR  V TSS
Sbjct:    4 QKETVCVTGASGFIGSWLVMRLLERGYFVRATVRDPGNLKKVQHLLDLPNAKTLLTLWKADLSEEGSYDDAINGCDGVFHVATPMD-----FESKDPENEVIKPTVNGMLGIMKACVKAKTVRRFVFTSS 128          

HSP 2 Score: 37.3502 bits (85), Expect = 5.491e-12
Identity = 24/63 (38.10%), Postives = 35/63 (55.56%), Query Frame = 3
Query:  705 YNHESWSDESLCIDKKL--W-YALGKL*SEKDAWKLAEETTFNWHN-LPGLVTGPDFIQGNLP 881
            Y+   WSD    + KK+  W Y + K  +EK AW  AEE   ++ + +P LV GP FI  ++P
Sbjct:  142 YDENDWSDLEFIMSKKMTGWMYFVSKTLAEKAAWDFAEEKGLDFISIIPTLVVGP-FITTSMP 203          
BLAST of EY711213 vs. ExPASy Swiss-Prot
Match: DFRA_VITVI (Dihydroflavonol-4-reductase OS=Vitis vinifera GN=DFR PE=1 SV=1)

HSP 1 Score: 45.8246 bits (107), Expect = 5.776e-11
Identity = 34/126 (26.98%), Postives = 54/126 (42.86%), Query Frame = 2
Query:  278 EEKLVCVTSGVSFLGLAIVNCLLLRGYAVRILI-DHXXXXXXXXXXXXXTCSNSVSVVTAKLTEADDLTAAFEGCRGVFHTSALADPAGLSGYSKSMAEVEVKTTENVMKACARASSVRNCVLTSS 652
            + + VCVT    F+G  +V  LL R   VR  + D                   +++  A L +      A +GC GVFH +   D       ++ + +  ++    +MK+CA A +VR  V TSS
Sbjct:    4 QSETVCVTGASGFIGSWLVMRLLERRLTVRATVRDPTNVKKVKHLLDLPKAETHLTLWKADLADEGSFDEAIKGCTGVFHVATPMDFESKDPENE-VIKPTIEGMLGIMKSCAAAKTVRRLVFTSS 128          

HSP 2 Score: 42.743 bits (99), Expect = 5.776e-11
Identity = 26/66 (39.39%), Postives = 37/66 (56.06%), Query Frame = 3
Query:  696 LPRYNHESWSDESLCIDKKL--W-YALGKL*SEKDAWKLAEETTFNWHN-LPGLVTGPDFIQGNLP 881
            LP Y+   WSD   C  KK+  W Y + K  +E+ AWK A+E   ++   +P LV GP FI  ++P
Sbjct:  139 LPVYDESCWSDMEFCRAKKMTAWMYFVSKTLAEQAAWKYAKENNIDFITIIPTLVVGP-FIMSSMP 203          
The following BLAST results are available for this feature:
BLAST of EY711213 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
DFRA_ARATH5.491e-1232.31Dihydroflavonol-4-reductase OS=Arabidopsis thalian... [more]
DFRA_VITVI5.776e-1126.98Dihydroflavonol-4-reductase OS=Vitis vinifera GN=D... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-702-005-B09-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711213 ID=EY711213; Name=EY711213; organism=Citrus sinensis; type=EST; length=893bp
CCACGCGTCCGCCCACGCGTCCTCCCACGCGTCCGGTAACCGTACCGAAA
CGGTAGAGAGAGAGAGAGGAGAGAGAGAGAGCCTCAATCGCTCCATCCTC
ACAGTCTCACCAAAAATGGGGTTTGTACGGAGTGACGAGAGCAAGAAGAT
GGAGATCGAGGAGCTGAAGCGCATGCTGGTAGCTTGCGCCGCCGTGCATC
GTAGAAAAGACGAGGAAGAATTCAAAGGCGCTCGTAATAATATTAACAAT
GTTCCGAAAGAAATCGGCGGTGACGGTGAAGAGAAGCTCGTTTGCGTCAC
TAGCGGCGTCTCCTTCTTGGGCCTCGCCATCGTCAACTGCCTCCTCCTTC
GCGGCTACGCTGTTCGCATCCTTATTGATCATCGAGAAGATAGAGAGGAA
TTGAGGGAGCTGATGAGGAGGACGTGTAGCAATAGCGTGTCAGTAGTAAC
GGCGAAGCTAACGGAAGCAGATGACTTGACGGCGGCATTTGAGGGTTGTC
GCGGCGTGTTTCACACCTCTGCCTTAGCTGACCCTGCCGGCCTTTCTGGC
TATTCTAAATCAATGGCCGAGGTAGAGGTGAAAACAACTGAGAACGTGAT
GAAGGCATGTGCAAGAGCATCCTCGGTGAGAAACTGTGTGCTTACATCGT
CGCTTTCGGCCTGCATTTGGCGAGATGGCCCGTTACAAGACCTTTCTTCC
CCGNTATAACCACGAATCCTGGAGTGACGAATCACTTTGCATCGACAAAA
AGCTTTGGTATGCGTTGGGTAAGCTTTAGTCAGAGAAAGATGCATGGAAA
CTGGCAGAGGAAACGACTTTTAATTGGCACAATCTGCCCGGGTTAGTTAC
AGGTCCTGACTTCATTCAAGGAAATCTACCGCACAATCCCTTT
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