EY711209

Overview
NameEY711209
Unique NameEY711209
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length918
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10520 contig Csv1_Contig10520:1..918. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY711209 vs. ExPASy Swiss-Prot
Match: VPS35_MOUSE (Vacuolar protein sorting-associated protein 35 OS=Mus musculus GN=Vps35 PE=1 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.871e-41
Identity = 104/270 (38.52%), Postives = 156/270 (57.78%), Query Frame = 1
Query:   13 LVFSSLKLVRQLQGPEENPFGEEGSTTPKKVFQLLNQTIETLYGVPAPELALRLYLQCAEAAND---SDLEPVAYEFFTQAYILYEEEISDSRAQVTAIHLIIGTLQRMHVFGVENRDTLTHKATGYSAKLLKKPDQCRAVYACSHLFWV-----DDQDNMKDGERVLLCLKRALRIANAAQQMSNATRGSTGSVTLFVEILNKYLYFFEKGNTQINAAAIQSLIELITAEMQS-ESNSPDPAADAFFASTLRYIQXQKQKSGAVGEKYE 795
            LVF++ +L  + +  E +   ++     +K+F   +QTI  L      EL LRL+LQ A AA +    + E VAYEF +QA+ LYE+EISDS+AQ+ AI LIIGT +RM  F  EN + L  +    ++KLLKKPDQ RAV  C+HLFW       + + +  G+RV+ CLK+AL+IAN     S         V LF+EILN+Y+YF+EK N  +    +  LI+ I  ++ + ES+      +  F +TL +++ +++   + G  YE
Sbjct:  532 LVFAAYQLAFRYK--ENSQMDDKWEKKCQKIFSFAHQTISALIKAELAELPLRLFLQGALAAGEIGFENHETVAYEFMSQAFSLYEDEISDSKAQLAAITLIIGTFERMKCFSEENHEPLRTQCALAASKLLKKPDQGRAVSTCAHLFWSGRNTDKNGEELHGGKRVMECLKKALKIANQCMDPSL-------QVQLFIEILNRYIYFYEKENDAVTIQVLNQLIQKIREDLPNLESSEETEQINKHFHNTLEHLRSRRESPESEGPIYE 792          
BLAST of EY711209 vs. ExPASy Swiss-Prot
Match: VPS35_HUMAN (Vacuolar protein sorting-associated protein 35 OS=Homo sapiens GN=VPS35 PE=1 SV=2)

HSP 1 Score: 169.474 bits (428), Expect = 2.444e-41
Identity = 104/270 (38.52%), Postives = 156/270 (57.78%), Query Frame = 1
Query:   13 LVFSSLKLVRQLQGPEENPFGEEGSTTPKKVFQLLNQTIETLYGVPAPELALRLYLQCAEAAND---SDLEPVAYEFFTQAYILYEEEISDSRAQVTAIHLIIGTLQRMHVFGVENRDTLTHKATGYSAKLLKKPDQCRAVYACSHLFWV-----DDQDNMKDGERVLLCLKRALRIANAAQQMSNATRGSTGSVTLFVEILNKYLYFFEKGNTQINAAAIQSLIELITAEMQS-ESNSPDPAADAFFASTLRYIQXQKQKSGAVGEKYE 795
            LVF++ +L  + +  E +   ++     +K+F   +QTI  L      EL LRL+LQ A AA +    + E VAYEF +QA+ LYE+EISDS+AQ+ AI LIIGT +RM  F  EN + L  +    ++KLLKKPDQ RAV  C+HLFW       + + +  G+RV+ CLK+AL+IAN     S         V LF+EILN+Y+YF+EK N  +    +  LI+ I  ++ + ES+      +  F +TL +++ +++   + G  YE
Sbjct:  532 LVFAAYQLAFRYK--ENSKVDDKWEKKCQKIFSFAHQTISALIKAELAELPLRLFLQGALAAGEIGFENHETVAYEFMSQAFSLYEDEISDSKAQLAAITLIIGTFERMKCFSEENHEPLRTQCALAASKLLKKPDQGRAVSTCAHLFWSGRNTDKNGEELHGGKRVMECLKKALKIANQCMDPSL-------QVQLFIEILNRYIYFYEKENDAVTIQVLNQLIQKIREDLPNLESSEETEQINKHFHNTLEHLRLRRESPESEGPIYE 792          
BLAST of EY711209 vs. ExPASy Swiss-Prot
Match: VPS35_BOVIN (Vacuolar protein sorting-associated protein 35 OS=Bos taurus GN=VPS35 PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 2.444e-41
Identity = 104/270 (38.52%), Postives = 156/270 (57.78%), Query Frame = 1
Query:   13 LVFSSLKLVRQLQGPEENPFGEEGSTTPKKVFQLLNQTIETLYGVPAPELALRLYLQCAEAAND---SDLEPVAYEFFTQAYILYEEEISDSRAQVTAIHLIIGTLQRMHVFGVENRDTLTHKATGYSAKLLKKPDQCRAVYACSHLFWV-----DDQDNMKDGERVLLCLKRALRIANAAQQMSNATRGSTGSVTLFVEILNKYLYFFEKGNTQINAAAIQSLIELITAEMQS-ESNSPDPAADAFFASTLRYIQXQKQKSGAVGEKYE 795
            LVF++ +L  + +  E +   ++     +K+F   +QTI  L      EL LRL+LQ A AA +    + E VAYEF +QA+ LYE+EISDS+AQ+ AI LIIGT +RM  F  EN + L  +    ++KLLKKPDQ RAV  C+HLFW       + + +  G+RV+ CLK+AL+IAN     S         V LF+EILN+Y+YF+EK N  +    +  LI+ I  ++ + ES+      +  F +TL +++ +++   + G  YE
Sbjct:  532 LVFAAYQLAFRYK--ENSKVDDKWEKKCQKIFSFAHQTISALIKAELAELPLRLFLQGALAAGEIGFENHETVAYEFMSQAFSLYEDEISDSKAQLAAITLIIGTFERMKCFSEENHEPLRTQCALAASKLLKKPDQGRAVSTCAHLFWSGRNTDKNGEELHGGKRVMECLKKALKIANQCMDPSL-------QVQLFIEILNRYIYFYEKENDAVTIQVLNQLIQKIREDLPNLESSEETEQINKHFHNTLEHLRLRRESPESEGPIYE 792          
BLAST of EY711209 vs. ExPASy Swiss-Prot
Match: VPS35_SCHPO (Vacuolar protein sorting-associated protein 35 OS=Schizosaccharomyces pombe GN=vps35 PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.709e-32
Identity = 80/201 (39.80%), Postives = 116/201 (57.71%), Query Frame = 1
Query:  103 VFQLLNQTIETLY-GVPAPELALRLYLQCAEAANDSDLEPVAYEFFTQAYILYEEEISDSRAQVTAIHLIIGTLQRMHVFGVENRDTLTHKATGYSAKLLKKPDQCRAVYACSHLFWV----DDQDNMKDGERVLLCLKRALRIANAAQQMSNATRGSTGSVTLFVEILNKYLYFFEKGNTQINAAAIQSLIELITAEMQS 690
            +++ +N  I  LY    + EL L LYL  AE A+  +    AYEFFTQA+ +YEE + DS  Q   + +IIG LQ+   F V++ DTL  K T Y++KLLKKPDQC  +Y  SHL+W     +D    +D +RVL CL+++L+IA+A             S+ LF+ IL +Y Y++++    I A  I  LI+L    M+S
Sbjct:  534 LWEFVNTCINVLYKNGDSLELCLALYLSAAEMADQENYPDFAYEFFTQAFSIYEESVLDSELQYQQLLMIIGKLQKTRNFSVDDYDTLITKCTLYASKLLKKPDQCCGIYLASHLWWQVASGEDSRPFQDPKRVLECLQKSLKIADACMDQLT-------SLKLFINILERYFYYYDQHCESIIAKHISGLIDLTEQNMRS 727          
BLAST of EY711209 vs. ExPASy Swiss-Prot
Match: VPS35_YEAST (Vacuolar protein sorting-associated protein 35 OS=Saccharomyces cerevisiae GN=VPS35 PE=1 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 9.633e-30
Identity = 83/237 (35.02%), Postives = 132/237 (55.70%), Query Frame = 1
Query:   55 PEENPFGEEGSTTPKKVFQLLNQTIETLYGV---PAPELALRLYLQCAEAANDSDLEPVAYEFFTQAYILYEEEISDSRAQVTAIHLIIGTLQRMH-VFGVENRDTLTHKATGYSAKLLKKPDQCRAVYACSHLFWVDDQDNM-----------KDGERVLLCLKRALRIANAAQQMSNATRGSTGSVTLFVEILNKYLYFF---EKGNTQINAAAIQSLIELITAEMQS---ESNS 702
            P+        S   K++F+ +++ I  ++        +L L+L LQCA  A+   L  ++Y+FF+QA+ ++EE +SDS+ Q+ A+  I  +LQ+   ++     D+L  + T + +KLLKK DQCRAVY CSHL+W  +  N+           +DG+RVL CL+R+LR+A++          +  S  L VEILN+ LY+F   ++  T I+   I  LIELI   ++S   E NS
Sbjct:  610 PDNKTLLSHYSNLLKQMFKFVSRCINDIFNSCNNSCTDLILKLNLQCAILADQLQLNEISYDFFSQAFTIFEESLSDSKTQLQALIYIAQSLQKTRSLYKEAYYDSLIVRCTLHGSKLLKKQDQCRAVYLCSHLWWATEISNIGEEEGITDNFYRDGKRVLECLQRSLRVADSIMD-------NEQSCELMVEILNRCLYYFIHGDESETHISIKYINGLIELIKTNLKSLKLEDNS 839          
BLAST of EY711209 vs. ExPASy Swiss-Prot
Match: VPS35_DICDI (Vacuolar sorting protein 35 OS=Dictyostelium discoideum GN=vps35 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 4.188e-25
Identity = 81/263 (30.80%), Postives = 137/263 (52.09%), Query Frame = 1
Query:    7 VRLVFSSLKLVRQLQGP--------EENPFGEEGSTTPKKVFQLLNQTIETLYGVPAPELALRLYLQCAEAANDSDLEPVAYEFFTQAYILYEEEISDSRAQVTAIHLIIGTLQRMHVFGVENRDTLTHKATGYSAKLLKKPDQCRAVYACSHLFWVDDQDNM-KDGERVLLCLKRALRIANAAQQMSNATRGSTGSVTLFVEILNKYLYFFEKGNTQINAAAIQSLIELITAEMQSESNSPDPAADAFFASTLRYIQXQKQK 768
            V LVF SL+ +R  +          +EN +   GS    K+F  +++TI+ L  +   +L+ RLYLQ  +  +   L     E   +A ++++E+I+D +AQV A+ L+I TL  + +   E  ++L  +    +++LL   DQ + +  CSHLFWVD+     ++ + VL  LK+AL I      +SN +    G+   FV+ILN+ L++ +K    +    +  L+ELI      E+   DPA   +  +T++YIQ Q  K
Sbjct:  532 VPLVFCSLRFIRNFKQQVDSGVISLDENKWIAIGS----KIFTFVSETIKALADIKLADLSFRLYLQALQTFDHCGLVSRVKELAIKALLIFQEDIADFKAQVMALQLLISTLNSLSIPNEEIYESLAAQTIKQASRLLLPQDQAKLISTCSHLFWVDNPSRQYQNPDSVLQALKKALSI------ISNESSPGLGT---FVDILNECLFYCDKETDAVPIQFVSDLVELIRTTHVKEA---DPAL-PYLQNTIKYIQSQNYK 777          
The following BLAST results are available for this feature:
BLAST of EY711209 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
VPS35_MOUSE1.871e-4138.52Vacuolar protein sorting-associated protein 35 OS=... [more]
VPS35_HUMAN2.444e-4138.52Vacuolar protein sorting-associated protein 35 OS=... [more]
VPS35_BOVIN2.444e-4138.52Vacuolar protein sorting-associated protein 35 OS=... [more]
VPS35_SCHPO2.709e-3239.80Vacuolar protein sorting-associated protein 35 OS=... [more]
VPS35_YEAST9.633e-3035.02Vacuolar protein sorting-associated protein 35 OS=... [more]
VPS35_DICDI4.188e-2530.80Vacuolar sorting protein 35 OS=Dictyostelium disco... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-702-005-B05-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711209 ID=EY711209; Name=EY711209; organism=Citrus sinensis; type=EST; length=918bp
CCACGCGTCCGCCTTGTGTTTTCTTCTCTGAAGTTGGTTCGGCAGCTCCA
AGGTCCAGAAGAAAATCCTTTTGGAGAAGAGGGATCAACTACACCTAAGA
AAGTTTTCCAGCTTTTAAACCAGACTATTGAGACCCTATATGGTGTTCCA
GCACCTGAATTGGCATTGCGGTTGTACTTGCAGTGTGCCGAGGCTGCAAA
TGACTCTGATCTAGAACCTGTGGCTTATGAATTTTTCACTCAAGCATATA
TCCTGTATGAAGAAGAAATTTCAGATTCCAGAGCACAAGTGACAGCAATA
CATCTAATAATAGGGACTCTCCAGAGGATGCACGTATTTGGTGTAGAAAA
CAGGGATACATTAACACACAAGGCTACAGGGTATTCTGCAAAGCTCTTAA
AGAAGCCTGATCAGTGCAGAGCTGTCTATGCATGCTCACATCTCTTCTGG
GTTGATGATCAGGATAACATGAAAGATGGAGAGAGGGTCCTGCTCTGTCT
CAAGCGTGCACTAAGAATAGCAAATGCTGCTCAACAAATGTCTAATGCCA
CACGAGGTAGCACTGGATCAGTCACACTTTTTGTAGAGATACTGAACAAG
TACCTTTATTTCTTTGAGAAGGGTAACACACAGATCAATGCTGCTGCAAT
CCAGAGCCTGATTGAGCTGATTACGGCAGAGATGCAAAGCGAATCTAATT
CACCGGATCCAGCTGCAGATGCTTTCTTTGCAAGCACATTGCGATACATA
CAGNTCCAGAAACAGAAAAGTGGTGCAGTGGGTGAAAAGTATGAGCCCTA
TCAGGTGTGACTCGNTGGATGACAAGAAGTCAATTTAGTTTTTGCAATAT
TTCTGAGACTTGACGAGTTTGATTCAGGCTTCTGCCGATAACAGTGATTT
GACTCATTCTATTGAGAG
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