EY711206

Overview
NameEY711206
Unique NameEY711206
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length840
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10545 contig Csv1_Contig10545:43..886. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY711206 vs. ExPASy Swiss-Prot
Match: SYS1_NEMVE (Protein SYS1 homolog OS=Nematostella vectensis GN=sys1 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.439e-15
Identity = 34/79 (43.04%), Postives = 57/79 (72.15%), Query Frame = 3
Query:   24 STVTGWCVIASILLTSVAGAGYMFHLIERAKKCLDFSATVYIIHLFICIVYGGWPSSITWWVVNGTGLALMALLGEYLC 260
            S++ G  ++ +  L S+ GA  ++ +++RAK+CLDF+ T +I+HL  C +Y G+P S TWW++N   LALMA++GE++C
Sbjct:   59 SSLKGKLLMIAFCLNSLTGAMALWFIVKRAKQCLDFTTTAHIVHLVFCCIYAGFPFSWTWWLLNIICLALMAVIGEFVC 137          
BLAST of EY711206 vs. ExPASy Swiss-Prot
Match: SYS1_DICDI (Protein SYS1 homolog OS=Dictyostelium discoideum GN=sys1 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.445e-13
Identity = 31/83 (37.35%), Postives = 54/83 (65.06%), Query Frame = 3
Query:   12 TVTASTVTGWCVIASILLTSVAGAGYMFHLIERAKKCLDFSATVYIIHLFICIVYGGWPSSITWWVVNGTGLALMALLGEYLC 260
            ++   + +G  V+ + L+ S+ G+  + +++ER+KKCLD SATV  IH  I  +  G+P ++ WW +   G+ +MA++GEYLC
Sbjct:   53 SINTHSQSGRVVMTAFLINSLFGSFCLKYIVERSKKCLDHSATVTFIHFIIVWIVSGFPKTVVWWAIQLIGMVIMAMIGEYLC 135          
BLAST of EY711206 vs. ExPASy Swiss-Prot
Match: SYS1_MOUSE (Protein SYS1 homolog OS=Mus musculus GN=Sys1 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.070e-12
Identity = 34/80 (42.50%), Postives = 51/80 (63.75%), Query Frame = 3
Query:   24 STVTGWCVIASILLTSVAGAGYMFHLIERAKKCLDFSATVYIIHLFICIVYGG-WPSSITWWVVNGTGLALMALLGEYLC 260
            ST  G   + S +L ++  A  + + I R K+CLDF+ TV+  HL  C +Y   +PS++TWW+V    +ALMA++GEYLC
Sbjct:   59 STPPGRLSMMSFVLNALTCALGLLYFIRRGKQCLDFTVTVHFFHLLGCWLYSSRFPSALTWWLVQAVCIALMAVIGEYLC 138          
BLAST of EY711206 vs. ExPASy Swiss-Prot
Match: SYS1_PONAB (Protein SYS1 homolog OS=Pongo abelii GN=SYS1 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.927e-12
Identity = 34/80 (42.50%), Postives = 50/80 (62.50%), Query Frame = 3
Query:   24 STVTGWCVIASILLTSVAGAGYMFHLIERAKKCLDFSATVYIIHLFICIVYGG-WPSSITWWVVNGTGLALMALLGEYLC 260
            ST  G   + S +L ++  A  + + I R K+CLDF+ TV+  HL  C  Y   +PS++TWW+V    +ALMA++GEYLC
Sbjct:   59 STPPGRLSMMSFILNALTCALGLLYFIRRGKQCLDFTVTVHFFHLLGCWFYSSRFPSALTWWLVQAVCIALMAVIGEYLC 138          
BLAST of EY711206 vs. ExPASy Swiss-Prot
Match: SYS1_PAPAN (Protein SYS1 homolog OS=Papio anubis GN=SYS1 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.927e-12
Identity = 34/80 (42.50%), Postives = 50/80 (62.50%), Query Frame = 3
Query:   24 STVTGWCVIASILLTSVAGAGYMFHLIERAKKCLDFSATVYIIHLFICIVYGG-WPSSITWWVVNGTGLALMALLGEYLC 260
            ST  G   + S +L ++  A  + + I R K+CLDF+ TV+  HL  C  Y   +PS++TWW+V    +ALMA++GEYLC
Sbjct:   59 STPPGRLSMMSFILNALTCALGLLYFIRRGKQCLDFTVTVHFFHLLGCWFYSSRFPSALTWWLVQAVCIALMAVIGEYLC 138          
BLAST of EY711206 vs. ExPASy Swiss-Prot
Match: SYS1_HUMAN (Protein SYS1 homolog OS=Homo sapiens GN=SYS1 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.927e-12
Identity = 34/80 (42.50%), Postives = 50/80 (62.50%), Query Frame = 3
Query:   24 STVTGWCVIASILLTSVAGAGYMFHLIERAKKCLDFSATVYIIHLFICIVYGG-WPSSITWWVVNGTGLALMALLGEYLC 260
            ST  G   + S +L ++  A  + + I R K+CLDF+ TV+  HL  C  Y   +PS++TWW+V    +ALMA++GEYLC
Sbjct:   59 STPPGRLSMMSFILNALTCALGLLYFIRRGKQCLDFTVTVHFFHLLGCWFYSSRFPSALTWWLVQAVCIALMAVIGEYLC 138          
BLAST of EY711206 vs. ExPASy Swiss-Prot
Match: SYS1_BOVIN (Protein SYS1 homolog OS=Bos taurus GN=SYS1 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.035e-11
Identity = 34/80 (42.50%), Postives = 50/80 (62.50%), Query Frame = 3
Query:   24 STVTGWCVIASILLTSVAGAGYMFHLIERAKKCLDFSATVYIIHLFICIVYGG-WPSSITWWVVNGTGLALMALLGEYLC 260
            ST  G     S +L ++  A  + + I R K+CLDF+ TV+  HL  C +Y   +PS++TWW+V    +ALMA++GEYLC
Sbjct:   59 STPPGRLSTMSFVLNALTCALGLLYFIRRGKQCLDFTVTVHFFHLLGCWLYSSRFPSALTWWLVQAVCIALMAVIGEYLC 138          
The following BLAST results are available for this feature:
BLAST of EY711206 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
SYS1_NEMVE3.439e-1543.04Protein SYS1 homolog OS=Nematostella vectensis GN=... [more]
SYS1_DICDI1.445e-1337.35Protein SYS1 homolog OS=Dictyostelium discoideum G... [more]
SYS1_MOUSE6.070e-1242.50Protein SYS1 homolog OS=Mus musculus GN=Sys1 PE=2 ... [more]
SYS1_PONAB7.927e-1242.50Protein SYS1 homolog OS=Pongo abelii GN=SYS1 PE=3 ... [more]
SYS1_PAPAN7.927e-1242.50Protein SYS1 homolog OS=Papio anubis GN=SYS1 PE=3 ... [more]
SYS1_HUMAN7.927e-1242.50Protein SYS1 homolog OS=Homo sapiens GN=SYS1 PE=1 ... [more]
SYS1_BOVIN1.035e-1142.50Protein SYS1 homolog OS=Bos taurus GN=SYS1 PE=2 SV... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-702-005-B02-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711206 ID=EY711206; Name=EY711206; organism=Citrus sinensis; type=EST; length=840bp
CCACGCGTCCGACAGTCACTGCCTCTACAGTCACTGGGTGGTGTGTTATT
GCTTCGATCCTGCTCACCTCAGTTGCAGGAGCTGGCTACATGTTTCATTT
AATAGAGAGGGCAAAGAAGTGCTTAGATTTTTCAGCCACCGTGTACATCA
TCCATCTTTTTATATGCATTGTATATGGAGGTTGGCCCTCCTCTATAACG
TGGTGGGTTGTGAATGGTACTGGACTTGCACTGATGGCTTTGCTAGGTGA
ATATCTGTGCATCAGACGTGAATTGCGAGAGATTCCTATACCACGTTACA
GATCAAATGTTTAAACGAAGAGGAGAGCTCAACAGGCAGGAATTAGTTTT
CTTGTTGGATTTTTATGATTATTTCTTCACTGTTATGGTGGAGTCCAGGG
ACTGCTTATTAATTAACAGATCTACTCTGACAGAAAAGAATTGTTTATAT
CTTTGCCTGTGGCTGCAATGGAGAGCAAATAGGTTCGAGATGGTTGTCAA
ACGTGTGAAGATTTGAGCACATTGGACTGGTTGTGTCTTAGGAAACTCTT
AAATGTTATGTACAATTGTAGGAGATCTTGAGCAAGATGATGCATTACTT
TTAGTATCATTTCTTATGGTGTCAAAAGTGATGTGTGTAGGTTTCTACAT
TTTGATATCACCAATGCTGAGTTTTCAGATATGTGGATGAAGTGGGCAAT
TTTTGTCATTTGAGTTGGGAGAATATTTTGCAGGTTGTTAAACTGAAACA
TGGATACAGAATTGTTATTAGATTTCATACCTCTGAGATGAATCATTATT
GGGCATTGCATTTTGCGCCTGGGTAAAAAAAAAAAAAAAA
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