EY711190

Overview
NameEY711190
Unique NameEY711190
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length920
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig845 contig Csv1_Contig845:56..975. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY711190 vs. ExPASy Swiss-Prot
Match: CRY1_ARATH (Cryptochrome-1 OS=Arabidopsis thaliana GN=CRY1 PE=1 SV=1)

HSP 1 Score: 507.679 bits (1306), Expect = 3.786e-143
Identity = 235/258 (91.09%), Postives = 246/258 (95.35%), Query Frame = 2
Query:   38 FLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEMWQQEAASRAAIGNGT 811
            FLSPHLHFGEVSVRKVFHLVRIKQV+WANEGN+AG+ESVNLFLKSIGLREYSRY+SFNHPYSHERPLLGHLKFF W VDE YFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYI+GT+PD R FDRIDNPQFEGYKFDPNGEYVRRWLPEL+RLPT+WIHHPWNAPESVLQAAGIELGSNYP PIV +D AK RL EALS+MWQ EAASRAAI NG+
Sbjct:  249 FLSPHLHFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLKSIGLREYSRYISFNHPYSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGLDEAKARLHEALSQMWQLEAASRAAIENGS 506          
BLAST of EY711190 vs. ExPASy Swiss-Prot
Match: CRY2_ARATH (Cryptochrome-2 OS=Arabidopsis thaliana GN=CRY2 PE=1 SV=2)

HSP 1 Score: 373.629 bits (958), Expect = 8.533e-103
Identity = 169/252 (67.06%), Postives = 203/252 (80.56%), Query Frame = 2
Query:   41 LSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEMWQQEAASRAA 796
            LSP+LHFGE+SVR VF   R+KQ+ WA + N  G+ES +LFL+ IGLREYSRY+ FN P++HE+ LL HL+FF W  D   FKAWRQGRTGYPLVDAGMRELWATGW+H+RIRV+VSSF VK L LPW+WGMKYFWDTLLDADLE D LGWQYISG+IPDG   DR+DNP  +G K+DP GEY+R+WLPELARLPTEWIHHPW+AP +VL+A+G+ELG+NY  PIV ID A+  L +A+S   + +    AA
Sbjct:  247 LSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIGLREYSRYICFNFPFTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRVIVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIPDGHELDRLDNPALQGAKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTARELLAKAISRTREAQIMIGAA 498          
BLAST of EY711190 vs. ExPASy Swiss-Prot
Match: CRY1_SINAL (Cryptochrome-1 OS=Sinapis alba GN=PHR1 PE=2 SV=1)

HSP 1 Score: 367.851 bits (943), Expect = 4.682e-101
Identity = 163/240 (67.92%), Postives = 199/240 (82.92%), Query Frame = 2
Query:   41 LSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALS 760
            LSP+LHFGE+SVR+VF   R+KQ+ WA + N  G+ES +LFL+ IGLR+YSR + FN P++HE+ LL HL+FF W  D   FKAWRQGRTGYPLVDAGMRELWATGW+H+RIRV+VSSF VK L LPW+WGMKYFWDTLLDADLE D +GWQYISG++PDG   DR+DNP  +G K+DP GEY+R+WLPELARLPTEWIHHPW+AP +VL+A+G+ELG+NY  PIV ID A+  L +A+S
Sbjct:  246 LSPYLHFGEISVRRVFQCARMKQIIWARDKNGEGEESADLFLRGIGLRDYSRIICFNFPFTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRVIVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDIIGWQYISGSLPDGHELDRLDNPAIQGAKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVVIDTARELLTKAIS 485          
BLAST of EY711190 vs. ExPASy Swiss-Prot
Match: PHR_STRGR (Deoxyribodipyrimidine photo-lyase OS=Streptomyces griseus GN=phr PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.937e-38
Identity = 90/241 (37.34%), Postives = 132/241 (54.77%), Query Frame = 2
Query:   41 LSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHP---YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEA 754
            LSPHLHFG VS  ++ H  R K       G   G+     F++ +  R++   +  + P   +S  RP     +   W  D     AW+ G TGYPLVDA MR+L   GW+H+R R++ +SF  K L + WR G ++F D L+D D+ ++ L WQ+++GT  D R  +R+ NP  +G +FD  G+YVR W+PELA +    IH PW      L  AG++    YP P+V +  A+ R + A
Sbjct:  234 LSPHLHFGTVSAAELVHRAREK-------GGLGGEA----FVRQLAWRDFHHQVLADRPDASWSDYRP-----RHDRWRSDADEMHAWKSGLTGYPLVDAAMRQLAHEGWMHNRARMLAASFLTKTLYVDWREGARHFLDLLVDGDVANNQLNWQWVAGTGTDTRP-NRVLNPVIQGKRFDARGDYVRGWVPELAEVEGSAIHEPWKL--QGLDRAGLD----YPDPVVDLAEARARFERA 451          
BLAST of EY711190 vs. ExPASy Swiss-Prot
Match: PHR_ECOLI (Deoxyribodipyrimidine photo-lyase OS=Escherichia coli (strain K12) GN=phrB PE=1 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.937e-38
Identity = 88/233 (37.77%), Postives = 134/233 (57.51%), Query Frame = 2
Query:   41 LSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAK 736
            LS  L  G +S R+  H +  +Q    + G  AG    +++L  +  RE+ R++   HP     RP +       W  +  + +AW++G+TGYP+VDA MR+L +TGW+H+R+R++ +SF VK L + WR G +YF   L+D DL ++  GWQ+ + T  D   + RI NP  +G KFD  GE++R+WLPEL  +P + +H PW       Q AG+ L  +YP PIV    A+
Sbjct:  238 LSASLATGGLSPRQCLHRLLAEQPQALDGG--AG----SVWLNELIWREFYRHLITYHPSLCKHRPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDHEGEFIRQWLPELRDVPGKVVHEPW----KWAQKAGVTL--DYPQPIVEHKEAR 458          
BLAST of EY711190 vs. ExPASy Swiss-Prot
Match: PHR_VIBCH (Deoxyribodipyrimidine photo-lyase OS=Vibrio cholerae GN=phrA PE=1 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 4.314e-38
Identity = 84/216 (38.89%), Postives = 126/216 (58.33%), Query Frame = 2
Query:   41 LSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAP--ESVLQAA 679
            LSP+L  G +S R+   + R+   S   E +    E   ++L  +  RE+ +++    P  S  R  +       W  D   F+ W +G+TGYP+VDA MR+L  TGW+H+R+R++V+SF  K L + WRWG +YF   L+D D  ++  GWQ+ + T  DG+ + RI NP  +G KFDPNG+++RRW+PEL  + + +IH PW  P   SVL  A
Sbjct:  239 LSPYLAIGVLSARQC--VARLYHESSMGELS----EGAQVWLSELIWREFYQHLVAIEPNLSKSRDFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKDLHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGDFIRRWVPELRSVSSAYIHQPWTYPAVNSVLYPA 448          
BLAST of EY711190 vs. ExPASy Swiss-Prot
Match: PHR_SALTY (Deoxyribodipyrimidine photo-lyase OS=Salmonella typhimurium GN=phrB PE=1 SV=2)

HSP 1 Score: 157.918 bits (398), Expect = 7.359e-38
Identity = 87/233 (37.34%), Postives = 134/233 (57.51%), Query Frame = 2
Query:   41 LSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAK 736
            LS  L  G +S R+  H +  +Q    + G  +      ++L  +  RE+ R++   +P     +P +   K  +W  +  YF+AW++G TGYP+VDA MR+L ATGW+H+R+R++ +SF VK L + WR G +YF   L+D DL ++  GWQ+ + T  D   + RI NP  +G +FD +GE++R+WLP L  +P + IH PW   E     AG+ L  +YP PIV    A+
Sbjct:  239 LSASLATGGLSPRQCLHRLLAEQPQALDGGPGS------VWLNELIWREFYRHLMTWYPALCKHQPFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKDLLIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEFIRQWLPALRDIPGKAIHEPWRWAEK----AGVVL--DYPRPIVEHKQAR 459          
BLAST of EY711190 vs. ExPASy Swiss-Prot
Match: PHR_BACPF (Deoxyribodipyrimidine photo-lyase (Fragment) OS=Bacillus pseudofirmus GN=phr PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 7.359e-38
Identity = 78/226 (34.51%), Postives = 122/226 (53.98%), Query Frame = 2
Query:   41 LSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIV 718
            LSP++  G VS R +++ +            +A   S   FLK +  R++ R + F  P   +R ++   +  +W  D+    +W++G TG+P+VDAGMR+L   GW+H+R+R++ +SF  K L + WR G +YF   L+D D  S+  GWQ+ +    D   + RI NP  +  +FD NG Y+R ++PEL  +P  +IH PW   E         L  +YP PIV
Sbjct:  104 LSPYIKTGAVSSRSIYYHIL---------NAEADSYSAETFLKELAWRDFYRMVHFYEPDCKDREIMEGYRELNWSHDQDDLTSWKRGETGFPIVDAGMRQLLNEGWMHNRLRMITASFLTKDLLIDWRLGERYFERMLIDYDPSSNIGGWQWAASVGTDAVPYFRIFNPVTQSKRFDENGTYIRTYIPELNHVPDHYIHEPWKMSEEEQVKYKCRLDEDYPLPIV 320          
BLAST of EY711190 vs. ExPASy Swiss-Prot
Match: PHR_SYNY3 (Deoxyribodipyrimidine photo-lyase OS=Synechocystis sp. (strain PCC 6803) GN=phrA PE=1 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.175e-35
Identity = 81/226 (35.84%), Postives = 123/226 (54.42%), Query Frame = 2
Query:   41 LSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIV 718
            LS  L FG +S R ++        +W    ++    S+  + + +  RE+ ++  ++ P   + P     + F W  ++ +F+AW +GRTGYP++DA M +L  TGW+H+R R++V+SF +K L L W+WG  YF  TL D DL ++  GWQ+ + +  D +   RI NP  +  KFDP GEY+R WLP+LAR  T  +      P       G     NYP PIV
Sbjct:  257 LSAALKFGVISPRTLWQTTL---EAWEQSRSEEARASIETWQQELAWREFYQHCLYSFPALAQGPYRSPFQEFPWEENQDHFQAWCEGRTGYPIIDAAMAQLNQTGWMHNRCRMIVASFLIKDLILNWQWGELYFMQTLYDGDLAANNGGWQWSASSGMDPKPL-RIFNPHTQAQKFDPEGEYIRTWLPQLARFDTGDLLTGKLTP-------GSRRSVNYPEPIV 471          
BLAST of EY711190 vs. ExPASy Swiss-Prot
Match: PHR_NEUCR (Deoxyribodipyrimidine photo-lyase OS=Neurospora crassa GN=phr-1 PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 5.457e-33
Identity = 78/245 (31.84%), Postives = 129/245 (52.65%), Query Frame = 2
Query:   41 LSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPY-SHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPT------EWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEA 754
            LS H   G +S R      R +  +    G   G+E +  ++  +  R++ +++  + PY    +P         W  +  +F AW QGRTG+P++DA MR++ +TG++H+R+R++V+SF  K L + WR G +YF + L+D D  S+  GW + +    D + + R+ NP  +  KFDP+G+Y+R+W+ EL  LP         IH P+      ++    E G  YP PIV    A+ R  +A
Sbjct:  394 LSVHFASGTLSARTAIRTARDRNNTKKLNG---GNEGIQRWISEVAWRDFYKHVLVHWPYVCMNKPFKPTYSNIEWSYNVDHFHAWTQGRTGFPIIDAAMRQVLSTGYMHNRLRMIVASFLAKDLLVDWRMGERYFMEHLIDGDFASNNGGWGFAASVGVDPQPYFRVFNPLLQSEKFDPDGDYIRKWVEELRDLPELKGGKGGEIHDPYGRGSEKVKKKLEEKG--YPRPIVEHSGARDRALDA 633          
The following BLAST results are available for this feature:
BLAST of EY711190 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
CRY1_ARATH3.786e-14391.09Cryptochrome-1 OS=Arabidopsis thaliana GN=CRY1 PE=... [more]
CRY2_ARATH8.533e-10367.06Cryptochrome-2 OS=Arabidopsis thaliana GN=CRY2 PE=... [more]
CRY1_SINAL4.682e-10167.92Cryptochrome-1 OS=Sinapis alba GN=PHR1 PE=2 SV=1[more]
PHR_STRGR1.937e-3837.34Deoxyribodipyrimidine photo-lyase OS=Streptomyces ... [more]
PHR_ECOLI1.937e-3837.77Deoxyribodipyrimidine photo-lyase OS=Escherichia c... [more]
PHR_VIBCH4.314e-3838.89Deoxyribodipyrimidine photo-lyase OS=Vibrio choler... [more]
PHR_SALTY7.359e-3837.34Deoxyribodipyrimidine photo-lyase OS=Salmonella ty... [more]
PHR_BACPF7.359e-3834.51Deoxyribodipyrimidine photo-lyase (Fragment) OS=Ba... [more]
PHR_SYNY31.175e-3535.84Deoxyribodipyrimidine photo-lyase OS=Synechocystis... [more]
PHR_NEUCR5.457e-3331.84Deoxyribodipyrimidine photo-lyase OS=Neurospora cr... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-004-H06-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711190 ID=EY711190; Name=EY711190; organism=Citrus sinensis; type=EST; length=920bp
CCACGCGTCCGCCCACGCGTCTGGCGCTACAACCTCATTTCTCTCTCCAC
ATTTGCATTTTGGGGAGGTTAGTGTGAGGAAAGTCTTCCATCTTGTCCGC
ATCAAGCAGGTTTCATGGGCCAATGAAGGGAACAAGGCTGGTGATGAGAG
TGTGAACTTGTTTCTCAAGTCAATTGGTCTTCGGGAATATTCAAGGTACA
TGAGTTTTAACCATCCTTACAGTCATGAAAGGCCTCTTCTTGGGCACCTT
AAGTTCTTTTCTTGGGTTGTGGATGAGGGCTATTTTAAGGCATGGAGGCA
AGGTAGAACTGGTTATCCACTGGTGGATGCTGGCATGAGAGAGTTGTGGG
CCACTGGTTGGCTTCATGATCGGATACGAGTAGTAGTTTCTAGTTTCTTT
GTAAAAGTTCTACAGCTTCCATGGAGATGGGGGATGAAATATTTTTGGGA
TACCCTCTTGGATGCAGATTTAGAAAGTGATGCTCTTGGTTGGCAGTACA
TATCCGGTACTATCCCTGATGGCCGTGCTTTTGACCGAATTGACAATCCA
CAGTTTGAGGGTTACAAGTTTGACCCCAATGGAGAATATGTACGACGGTG
GCTCCCTGAACTTGCCAGACTGCCCACTGAATGGATACACCACCCATGGA
ATGCACCAGAGTCTGTGCTCCAAGCTGCTGGCATTGAGCTGGGTTCCAAT
TACCCTTTTCCCATAGTACGGATTGACGCAGCAAAATGCAGGCTGGACGA
AGCACTTTCAGAAATGTGGCAGCAAGAAGCAGCTTCAAGAGCTGCCATTG
GAAATGGAACTTGAGGAAAGTCTTGGAGACTCTTCTGACTCGGCCCAATT
GCCTTTCTCCCGACATACAGAGGAAGGAATCCCCTGAACTGCTAAGAACA
ACTTCCTACCCAGGTTCGGG
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