EY711181

Overview
NameEY711181
Unique NameEY711181
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length948
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7319 contig Csv1_Contig7319:73..1023. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY711181 vs. ExPASy Swiss-Prot
Match: GAT10_ARATH (GATA transcription factor 10 OS=Arabidopsis thaliana GN=GATA10 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.843e-23
Identity = 58/122 (47.54%), Postives = 87/122 (71.31%), Query Frame = 2 
Query:  122 MIGTNFMDEIDCGSFFDHIDDLLDFPNEDVEAGLPNADSNSFPSIWPTQSDSLP-GSDSVF-SNSSTDLSTQLSVPYEDIVQLEWLSNFVEDSFSGGSLTMSKQES-STITKDDSSHNQFQT 478
            MIGT+F +++DCG+FFD++DDL+DFP  D++ G    DS+SFP+IW T  D+ P  SD +F SN+++D S +L VP+EDIV++E   +FVE+     +L   K++S ST T   SSH+QF++
Sbjct:    1 MIGTSFPEDLDCGNFFDNMDDLMDFPGGDIDVGFGIGDSDSFPTIWTTHHDTWPAASDPLFSSNTNSDSSPELYVPFEDIVKVERPPSFVEE-----TLVEKKEDSFSTNTDSSSSHSQFRS 117
The following BLAST results are available for this feature:
BLAST of EY711181 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
GAT10_ARATH1.843e-2347.54GATA transcription factor 10 OS=Arabidopsis thalia... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-702-004-G07-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711181 ID=EY711181; Name=EY711181; organism=Citrus sinensis; type=EST; length=948bp
CACTAGCCACACTTGTCACTATNCCGGAACTACTGCCCGACCCACGCGTC
CGAAATTCAGCTTTCGCTCTCTTTCTCTGCCGCCAACTCCACGAGGAAAA
TTTTAATTATCAAACTCATTCATGATTGGAACAAACTTCATGGACGAAAT
AGACTGCGGCAGCTTCTTTGATCACATAGACGATTTACTCGACTTCCCAA
ATGAAGATGTCGAAGCCGGGTTACCCAACGCCGATTCTAACTCGTTCCCC
TCCATTTGGCCGACTCAGTCCGACTCCTTACCCGGGTCCGACTCAGTTTT
CTCCAACAGCTCCACTGACCTGTCCACCCAGCTCTCTGTTCCATATGAGG
ACATTGTTCAGCTTGAGTGGCTTTCGAACTTTGTTGAGGATTCCTTCTCT
GGAGGAAGCCTTACTATGAGCAAACAAGAGTCATCCACGATCACTAAGGA
TGATTCATCTCACAACCAGTTTCAGACCTCCAGCCCGGTCTCTGTTTTAG
AGAGCAGCAGCTCCTGCTCGGGGGAGAAAACCGTGTTGGGAAGCCCTGAG
ACTACGGCCCCTGGGAGGCGCGGGCGTGCTCGTAGCAAGCGCCCTCGCCC
CGCAATGTTTAATCCCCGTCCTCCGGTTCAACTTGTGTCGCCAACTTCCT
CAGTCACTGAAACACAACCACAGCATCGCTTAATTGCCCCCAAGGCCTCA
TCTGATTCTGAGAATTTTGCAGAGTCTCGCCTTGTGATTAAATACCAAAG
CAATTCAACCCGGAGCACAAGAAGAAAAAGAAAATCAATTGTCAGTTCAA
AAGTTTCCGATGAGACTAGGGAAGTTGGGCCACACAAGCGGTTAGGAAAT
GCATGCATTGCGAGATAACGAAAACGCCTCATGGAAGAGCGGGGCCAGTG
GGCCCAAAACCTTTTGCAAGCTTGCGGGGTCGCTATAATCTGGCACGG
back to top