EY711178

Overview
NameEY711178
Unique NameEY711178
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length947
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY711178_ssr534 microsatellite EY711178_ssr534:534..548. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY711178 vs. ExPASy Swiss-Prot
Match: RS8_MAIZE (40S ribosomal protein S8 OS=Zea mays GN=RPS8 PE=2 SV=2)

HSP 1 Score: 307.76 bits (787), Expect = 6.024e-83
Identity = 159/213 (74.65%), Postives = 164/213 (77.00%), Query Frame = 3
Query:  114 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXXXXXXXXXXXXXXXSNHVVRKLEKRQKDRTLDPHIEEQFGAGRLLACISSRPGQCGRADGYILEX*ELGFYMKELQR 752
            MGISRDSMH                 YELGRQPANTKLSSNKTVRR+RVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYL HYGVDIGR                          SNHV RKLEKR++ RTLDPHIEEQFG+GRLLACISSRPGQCGRADGYILE  EL FYMK+LQR
Sbjct:    1 MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGVDIGRKKKTPAAKKDNAEGQEVEAAAEETKKSNHVTRKLEKRKEGRTLDPHIEEQFGSGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQR 213          
BLAST of EY711178 vs. ExPASy Swiss-Prot
Match: RS8_ORYSJ (40S ribosomal protein S8 OS=Oryza sativa subsp. japonica GN=RPS8 PE=2 SV=2)

HSP 1 Score: 303.523 bits (776), Expect = 1.136e-81
Identity = 160/213 (75.12%), Postives = 164/213 (77.00%), Query Frame = 3
Query:  114 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXXXXXXXXXXXXXXXSNHVVRKLEKRQKDRTLDPHIEEQFGAGRLLACISSRPGQCGRADGYILEX*ELGFYMKELQR 752
            MGISRDSMH                 YELGRQPANTKLSSNKTVRR+RVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYL HYGVDIGR                          SNHVVRKLEKRQ+ RTLD HIEEQFG+GRLLACISSRPGQCGRADGYILE  EL FYMK+LQR
Sbjct:    1 MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGVDIGR-KKKAPAAKKDAEGQDAEATTEEAKKSNHVVRKLEKRQQGRTLDAHIEEQFGSGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQR 212          
BLAST of EY711178 vs. ExPASy Swiss-Prot
Match: RS8_PRUAR (40S ribosomal protein S8 OS=Prunus armeniaca GN=RPS8 PE=2 SV=1)

HSP 1 Score: 291.197 bits (744), Expect = 5.835e-78
Identity = 154/213 (72.30%), Postives = 161/213 (75.59%), Query Frame = 3
Query:  114 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXXXXXXXXXXXXXXXSNHVVRKLEKRQKDRTLDPHIEEQFGAGRLLACISSRPGQCGRADGYILEX*ELGFYMKELQR 752
            MGISRDSMH                 YELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGN+SWGSEAVTRKTR+LDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV+IGR                          SNHV  KLEKRQ+ RTLD HIEEQFG G+LLACISSRPGQCG+ADG ILE  EL FYMK+LQR
Sbjct:    1 MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNFSWGSEAVTRKTRLLDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVEIGR--KKKTAAAKKDTPEEGEATTEEAKKSNHVAIKLEKRQQGRTLDAHIEEQFGGGKLLACISSRPGQCGKADGDILEGKELEFYMKKLQR 211          
BLAST of EY711178 vs. ExPASy Swiss-Prot
Match: RS82_ARATH (40S ribosomal protein S8-2 OS=Arabidopsis thaliana GN=RPS8B PE=2 SV=1)

HSP 1 Score: 284.648 bits (727), Expect = 5.461e-76
Identity = 151/213 (70.89%), Postives = 159/213 (74.65%), Query Frame = 3
Query:  114 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXXXXXXXXXXXXXXXSNHVVRKLEKRQKDRTLDPHIEEQFGAGRLLACISSRPGQCGRADGYILEX*ELGFYMKELQR 752
            MGISRDS+H                 YELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGN+SWGSEAVTRKTRILDV YNASNNELVRTQTLVKSAIVQVDAAPFKQ YLQHYGVDIGR                          SNHV RKLE RQ+ R LD H+EEQF +GRLLACI+SRPGQCGRADGYILE  EL FYMK+LQ+
Sbjct:    1 MGISRDSIHKRRATGGKQKMWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNFSWGSEAVTRKTRILDVAYNASNNELVRTQTLVKSAIVQVDAAPFKQGYLQHYGVDIGR------------KKKGEAVTTEEVKKSNHVQRKLEMRQEGRALDSHLEEQFSSGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQK 201          
BLAST of EY711178 vs. ExPASy Swiss-Prot
Match: RS81_ARATH (40S ribosomal protein S8-1 OS=Arabidopsis thaliana GN=RPS8A PE=2 SV=1)

HSP 1 Score: 281.182 bits (718), Expect = 6.038e-75
Identity = 144/215 (66.98%), Postives = 160/215 (74.42%), Query Frame = 3
Query:  114 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXXXXXXXXXXXXXXX--SNHVVRKLEKRQKDRTLDPHIEEQFGAGRLLACISSRPGQCGRADGYILEX*ELGFYMKELQR 752
            MGISRDS+H                 YE+GRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEA TRKTR+LDVVYNASNNELVRT+TLVKSAIVQVDAAPFKQWYL HYGV++GR                            SNH++RK+  RQ+ R+LD HIE+QF +GRLLACISSRPGQCGRADGYILE  EL FYMK++Q+
Sbjct:    1 MGISRDSIHKRRATGGKQKQWRKKRKYEMGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEATTRKTRVLDVVYNASNNELVRTKTLVKSAIVQVDAAPFKQWYLSHYGVELGRKKKSASSTKKDGEEGEEAAVAAPEEVKKSNHLLRKIASRQEGRSLDSHIEDQFASGRLLACISSRPGQCGRADGYILEGKELEFYMKKIQK 215          
BLAST of EY711178 vs. ExPASy Swiss-Prot
Match: RS8_ICTPU (40S ribosomal protein S8 OS=Ictalurus punctatus GN=rps8 PE=2 SV=3)

HSP 1 Score: 212.616 bits (540), Expect = 2.637e-54
Identity = 109/212 (51.42%), Postives = 138/212 (65.09%), Query Frame = 3
Query:  114 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXXXXXXXXXXXXXXXSNHVVRKLEKRQKDRTLDPHIEEQFGAGRLLACISSRPGQCGRADGYILEX*ELGFYMKELQ 749
            MGISRD+ H                 YELGR P+NTKL   K +  +RVRGGN K+RALRLD GN+SWGSE  TRKTRI+DVVYNASNNELVRT+TLVK+ ++ VD+APF+QWY  HY + +GR                          S  V +K +KR+K+  + P ++EQF  G+LLACISSRPGQCGRADGY+LE  EL FY+++++
Sbjct:    1 MGISRDNWHKRRKTGGKRKPVHKKRKYELGRPPSNTKLGP-KRIHTVRVRGGNKKYRALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCVILVDSAPFRQWYESHYALPLGR--------KKGAKLTPEEEDILNKKRSKKVQKKFDKRRKNSKISPLLDEQFQQGKLLACISSRPGQCGRADGYVLEGKELEFYLRKIK 203          
BLAST of EY711178 vs. ExPASy Swiss-Prot
Match: RS8_APIME (40S ribosomal protein S8 OS=Apis mellifera GN=RpS8 PE=2 SV=2)

HSP 1 Score: 203.756 bits (517), Expect = 1.225e-51
Identity = 109/212 (51.42%), Postives = 131/212 (61.79%), Query Frame = 3
Query:  114 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXXXXXXXXXXXXXXXSNHVVRKLEKRQKDRTLDPHIEEQFGAGRLLACISSRPGQCGRADGYILEX*ELGFYMKELQ 749
            MGISRD  H                 +ELGR  ANTKL   + +  +R RGGN K+RALRLDTGN+SWGSE  TRKTRI+DVVYNASNNELVRT+TLVK+AIV +DA PF+QWY  HY + +GR                          S     K + RQ+   ++P +EEQF  GR+LACISSRPGQCGR DGYILE  EL FYM+ ++
Sbjct:    1 MGISRDHWHKRRATGGKRKPIRKKRKFELGRPAANTKLGPQR-IHTVRTRGGNKKYRALRLDTGNFSWGSECTTRKTRIIDVVYNASNNELVRTKTLVKNAIVTIDATPFRQWYEGHYVLPLGR--------KRGAKLTEAEEEVLNKKRSKKAEAKYKARQRFAKVEPALEEQFATGRVLACISSRPGQCGREDGYILEGKELEFYMRRIK 203          
BLAST of EY711178 vs. ExPASy Swiss-Prot
Match: RS8_DANRE (40S ribosomal protein S8 OS=Danio rerio GN=rps8 PE=2 SV=2)

HSP 1 Score: 202.986 bits (515), Expect = 2.090e-51
Identity = 107/212 (50.47%), Postives = 133/212 (62.74%), Query Frame = 3
Query:  114 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXXXXXXXXXXXXXXXSNHVVRKLEKRQKDRTLDPHIEEQFGAGRLLACISSRPGQCGRADGYILEX*ELGFYMKELQ 749
            MGISRD+ H                 YELGR  ANTK+   + +  IRVRGGN K+RALRLD GN+SWGSE  TRKTRI+DVVYNASNNELVRT+TLVK+ +V VD+ P++QWY  HY + +GR                          S  V +K   R+K   + P +EEQF  G+LLACISSRPGQCGRADGY+LE  EL FY+++++
Sbjct:    1 MGISRDNWHKRRRTGGKRKPVHKKRKYELGRPAANTKIGPRR-IHTIRVRGGNKKYRALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCVVLVDSTPYRQWYESHYALPLGR--------KKGAKLTPEEEEILNKKRSKKVQKKFTLRRKTAKISPLLEEQFLQGKLLACISSRPGQCGRADGYVLEGKELEFYLRKIK 203          
BLAST of EY711178 vs. ExPASy Swiss-Prot
Match: RS8_RAT (40S ribosomal protein S8 OS=Rattus norvegicus GN=Rps8 PE=1 SV=2)

HSP 1 Score: 201.445 bits (511), Expect = 6.080e-51
Identity = 103/212 (48.58%), Postives = 135/212 (63.68%), Query Frame = 3
Query:  114 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXXXXXXXXXXXXXXXSNHVVRKLEKRQKDRTLDPHIEEQFGAGRLLACISSRPGQCGRADGYILEX*ELGFYMKELQ 749
            MGISRD+ H                 YELGR  ANTK+   + +  +RVRGGN K+RALRLD GN+SWGSE  TRKTRI+DVVYNASNNELVRT+TLVK+ IV +D+ P++QWY  HY + +GR                          S  + +K ++R+K+  +   +EEQF  G+LLACI+SRPGQCGRADGY+LE  EL FY+++++
Sbjct:    1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRR-IHTVRVRGGNKKYRALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGR--------KKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFYLRKIK 203          
BLAST of EY711178 vs. ExPASy Swiss-Prot
Match: RS8_MOUSE (40S ribosomal protein S8 OS=Mus musculus GN=Rps8 PE=1 SV=2)

HSP 1 Score: 201.445 bits (511), Expect = 6.080e-51
Identity = 103/212 (48.58%), Postives = 135/212 (63.68%), Query Frame = 3
Query:  114 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXXXXXXXXXXXXXXXSNHVVRKLEKRQKDRTLDPHIEEQFGAGRLLACISSRPGQCGRADGYILEX*ELGFYMKELQ 749
            MGISRD+ H                 YELGR  ANTK+   + +  +RVRGGN K+RALRLD GN+SWGSE  TRKTRI+DVVYNASNNELVRT+TLVK+ IV +D+ P++QWY  HY + +GR                          S  + +K ++R+K+  +   +EEQF  G+LLACI+SRPGQCGRADGY+LE  EL FY+++++
Sbjct:    1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRR-IHTVRVRGGNKKYRALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGR--------KKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFYLRKIK 203          
The following BLAST results are available for this feature:
BLAST of EY711178 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
RS8_MAIZE6.024e-8374.6540S ribosomal protein S8 OS=Zea mays GN=RPS8 PE=2 ... [more]
RS8_ORYSJ1.136e-8175.1240S ribosomal protein S8 OS=Oryza sativa subsp. ja... [more]
RS8_PRUAR5.835e-7872.3040S ribosomal protein S8 OS=Prunus armeniaca GN=RP... [more]
RS82_ARATH5.461e-7670.8940S ribosomal protein S8-2 OS=Arabidopsis thaliana... [more]
RS81_ARATH6.038e-7566.9840S ribosomal protein S8-1 OS=Arabidopsis thaliana... [more]
RS8_ICTPU2.637e-5451.4240S ribosomal protein S8 OS=Ictalurus punctatus GN... [more]
RS8_APIME1.225e-5151.4240S ribosomal protein S8 OS=Apis mellifera GN=RpS8... [more]
RS8_DANRE2.090e-5150.4740S ribosomal protein S8 OS=Danio rerio GN=rps8 PE... [more]
RS8_RAT6.080e-5148.5840S ribosomal protein S8 OS=Rattus norvegicus GN=R... [more]
RS8_MOUSE6.080e-5148.5840S ribosomal protein S8 OS=Mus musculus GN=Rps8 P... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-004-G04-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711178 ID=EY711178; Name=EY711178; organism=Citrus sinensis; type=EST; length=947bp
GTCCCCCTTGGCACCGTTCCGGAATTCTCTGCTCGACCACGCGTCCGAGC
GGGAGCATTGCGAGAGTACGTTACAGTGAGCAGCGCCGCAGCAGCAGCTA
CAGCTCAGCCAAGATGGGTATTTCCAGAGATTCAATGCATAAGAGACGCG
CCACTGGTGGCAAGAAGAAAGCTTGGAGGAAGAAGCGCAAGTACGAACTT
GGTCGTCAGCCTGCAAATACCAAGCTCTCTAGCAACAAGACTGTACGGAG
AATTCGTGTCAGAGGAGGCAATGTGAAGTGGAGGGCCCTGAGACTGGACA
CTGGGAACTATTCCTGGGGTAGCGAGGCTGTCACCCGCAAGACCCGTATC
CTGGATGTTGTTTACAATGCCTCTAATAATGAGCTCGTCAGGACTCAAAC
TCTGGTGAAGAGTGCCATTGTGCAAGTGGATGCAGCGCCTTTTAAGCAAT
GGTACCTTCAGCACTATGGCGTTGACATTGGTAGGAAGAAGAAGGCAGTT
ACCAAGAAGGAAACCACAGAGGAGGGAGAAGGTGCAGCAGCAGCAGCAGA
AGAAACTAAGAAGAGCAATCATGTTGTTAGGAAGCTTGAAAAGCGCCAGA
AGGACCGCACACTCGATCCTCACATTGAAGAGCAATTTGGTGCTGGTAGG
TTGTTGGCCTGCATTTCTTCACGGCCAGGTCAATGTGGCAGAGCTGATGG
GTACATACTAGAANGGTAGGAGCTGGGATTTTACATGAAAGAGCTCCAGA
GAAAGAAGGGCAAGGGTGCAGGAGCCGCTGCTAAAAATCATTATGCCCAT
GCGNCTGNNTTGATCTTATAGTGATTTTGTTGGTTTATGTATGGGAACCT
GACGGGCTACATTAAAGAACATGAGGGGGATATGTTTAGATTTTTTTTTT
TTTTATGAAAACTTCTTTACATGTAAGGNTTCCAATAGAAACCGGGA
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