EY711175

Overview
NameEY711175
Unique NameEY711175
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length888
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY711175_ssr298 microsatellite EY711175_ssr298:298..312. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY711175 vs. ExPASy Swiss-Prot
Match: TCP8_ARATH (Transcription factor TCP8 OS=Arabidopsis thaliana GN=TCP8 PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.912e-43
Identity = 87/91 (95.60%), Postives = 89/91 (97.80%), Query Frame = 1
Query:  331 KRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSTLNVSLRSSGSTLSAPPSKSAP 603
            KRSTKDRHTKVDGRGRRIRMPA CAARVFQLTRELGHKSDGETIEWLLQQAEPAI+AATGTGTIPANFSTL+VSLRSSGSTLSAPPSKS P
Sbjct:   57 KRSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAIVAATGTGTIPANFSTLSVSLRSSGSTLSAPPSKSVP 147          
BLAST of EY711175 vs. ExPASy Swiss-Prot
Match: TCP23_ARATH (Transcription factor TCP23 OS=Arabidopsis thaliana GN=TCP23 PE=1 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.675e-39
Identity = 82/91 (90.11%), Postives = 84/91 (92.31%), Query Frame = 1
Query:  325 PVKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSTLNVSLRSSGSTLSAPPSKS 597
            P KR +KDRH KVDGRGRRIRMPA CAARVFQLTREL HKSDGETIEWLLQQAEPAIIAATGTGTIPAN STLN+SLRSSGSTLSAP SKS
Sbjct:   50 PAKRPSKDRHIKVDGRGRRIRMPAICAARVFQLTRELQHKSDGETIEWLLQQAEPAIIAATGTGTIPANISTLNISLRSSGSTLSAPLSKS 140          
BLAST of EY711175 vs. ExPASy Swiss-Prot
Match: TCP15_ARATH (Transcription factor TCP15 OS=Arabidopsis thaliana GN=TCP15 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 4.874e-39
Identity = 78/95 (82.11%), Postives = 87/95 (91.58%), Query Frame = 1
Query:  319 PPPVKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSTLNVSLRSSGSTLSAPPSKSAP 603
            PPP + STKDRHTKV+GRGRRIRMPA CAARVFQLTRELGHKSDGETIEWLLQQAEPA+IAATGTGTIPANF++LN+SLRSS S+LSA   ++ P
Sbjct:   45 PPPKRTSTKDRHTKVEGRGRRIRMPAMCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSRSSLSAAHLRTTP 139          
BLAST of EY711175 vs. ExPASy Swiss-Prot
Match: TCP14_ARATH (Transcription factor TCP14 OS=Arabidopsis thaliana GN=TCP14 PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 1.086e-38
Identity = 78/89 (87.64%), Postives = 86/89 (96.63%), Query Frame = 1
Query:  322 PPVKR-STKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSTLNVSLRSSGSTLSAP 585
            PP+KR STKDRHTKVDGRGRRIRMPA CAARVFQLTRELGHKSDGETIEWLLQQAEP++IAATGTGTIPANF++LN+SLRSSGS++S P
Sbjct:  110 PPLKRASTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPSVIAATGTGTIPANFTSLNISLRSSGSSMSLP 198          
BLAST of EY711175 vs. ExPASy Swiss-Prot
Match: TCP22_ARATH (Transcription factor TCP22 OS=Arabidopsis thaliana GN=TCP22 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 2.048e-37
Identity = 80/92 (86.96%), Postives = 84/92 (91.30%), Query Frame = 1
Query:  328 VKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSTLNVSLRS-SGSTLSAPPSKSA 600
            VK+ TKDRHTKVDGRGRRIRMPA CAARVFQLTRELGHKSDGETIEWLLQQAEPAIIA+TGTGTIPANFSTLN SLRS  GSTL +  SKS+
Sbjct:   59 VKKPTKDRHTKVDGRGRRIRMPAMCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIASTGTGTIPANFSTLNASLRSGGGSTLFSQASKSS 150          
BLAST of EY711175 vs. ExPASy Swiss-Prot
Match: PCF3_ORYSJ (Transcription factor PCF3 OS=Oryza sativa subsp. japonica GN=PCF3 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.124e-35
Identity = 83/140 (59.29%), Postives = 94/140 (67.14%), Query Frame = 1
Query:  331 KRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSTLNVSLRSSGSTLSAPPSKSAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEGVPHTALLGFHHSHEQ 750
            KR TKDRHTKV+GRGRRIRMPA CAARVFQLTRELGHK+DGETIEWLLQQAEPAI+AATGTGTIPANFS+L VSLRS+ S  S+P  ++AP                               ++     A+LGFHH H Q
Sbjct:  149 KRPTKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAEPAIVAATGTGTIPANFSSLAVSLRSAASHSSSP--RAAP-------------------------FHHLQQQQQHDVAAMLGFHHHHHQ 261          
BLAST of EY711175 vs. ExPASy Swiss-Prot
Match: TCP9_ARATH (Transcription factor TCP9 OS=Arabidopsis thaliana GN=TCP9 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 3.167e-30
Identity = 65/85 (76.47%), Postives = 75/85 (88.24%), Query Frame = 1
Query:  322 PPVKR-STKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSTLNVSLRSSGST 573
            PP+KR STKDRHTKV+GRGRRIRMPATCAAR+FQLTRELGHKSDGETI WLL+ AEPAIIAATGTGT+PA   ++N +L+   +T
Sbjct:   68 PPLKRASTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLENAEPAIIAATGTGTVPAIAMSVNGTLKIPTTT 152          
BLAST of EY711175 vs. ExPASy Swiss-Prot
Match: TCP7_ARATH (Transcription factor TCP7 OS=Arabidopsis thaliana GN=TCP7 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 7.055e-30
Identity = 63/83 (75.90%), Postives = 73/83 (87.95%), Query Frame = 1
Query:  331 KRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSTLNVSLRSSGSTLS 579
            K   KDRH+KVDGRGRRIRMP  CAARVFQLTRELGHKSDG+TIEWLL+QAEP+IIAATGTGT PA+FST +VS+R + ++ S
Sbjct:   36 KPPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTASVSIRGATNSTS 118          
BLAST of EY711175 vs. ExPASy Swiss-Prot
Match: TCP20_ARATH (Transcription factor TCP20 OS=Arabidopsis thaliana GN=TCP20 PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 4.573e-29
Identity = 72/143 (50.35%), Postives = 84/143 (58.74%), Query Frame = 1
Query:  160 PAPPTQHAVVDASLAIATRSSSTPAPNNQQNLXXXXXXXXXXXXXXXXXXXXXPPPVKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPAN--FSTLNVSLRSSGSTLSA 582
            P PP    +VD   A A  S     P  +                          P + S KDRHTKV+GRGRRIRMPA CAAR+FQLTRELGHKSDGETI+WLLQQAEP+IIAATG+GTIPA+   S+   S    G +L+A
Sbjct:   18 PPPPRNQGLVDDDAASAVVSDENRKPTTEIKDFQIVVSASDKEPNKKSQNQNQLGPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGSGTIPASALASSAATSNHHQGGSLTA 160          
BLAST of EY711175 vs. ExPASy Swiss-Prot
Match: PCF2_ORYSJ (Transcription factor PCF2 OS=Oryza sativa subsp. japonica GN=PCF2 PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 4.573e-29
Identity = 67/95 (70.53%), Postives = 78/95 (82.11%), Query Frame = 1
Query:  319 PPPVKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSTLNVSLR-SSGSTLSAPPSKSA 600
            PPP  R   DRHTKV+GRGRRIRMPA CAAR+FQLTRELGHKSDGETI WLLQQ+EPAIIAATGTGT+PA  +T++  LR  + S+ S+ P+ SA
Sbjct:   71 PPPRNR---DRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLQQSEPAIIAATGTGTVPAIATTVDGVLRIPTQSSSSSGPASSA 162          
The following BLAST results are available for this feature:
BLAST of EY711175 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
TCP8_ARATH1.912e-4395.60Transcription factor TCP8 OS=Arabidopsis thaliana ... [more]
TCP23_ARATH1.675e-3990.11Transcription factor TCP23 OS=Arabidopsis thaliana... [more]
TCP15_ARATH4.874e-3982.11Transcription factor TCP15 OS=Arabidopsis thaliana... [more]
TCP14_ARATH1.086e-3887.64Transcription factor TCP14 OS=Arabidopsis thaliana... [more]
TCP22_ARATH2.048e-3786.96Transcription factor TCP22 OS=Arabidopsis thaliana... [more]
PCF3_ORYSJ1.124e-3559.29Transcription factor PCF3 OS=Oryza sativa subsp. j... [more]
TCP9_ARATH3.167e-3076.47Transcription factor TCP9 OS=Arabidopsis thaliana ... [more]
TCP7_ARATH7.055e-3075.90Transcription factor TCP7 OS=Arabidopsis thaliana ... [more]
TCP20_ARATH4.573e-2950.35Transcription factor TCP20 OS=Arabidopsis thaliana... [more]
PCF2_ORYSJ4.573e-2970.53Transcription factor PCF2 OS=Oryza sativa subsp. j... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-702-004-F12-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711175 ID=EY711175; Name=EY711175; organism=Citrus sinensis; type=EST; length=888bp
CCAGAGTTTTTTTTTTTTTTGCANNCGNGGTAAANNNNNCCCTATGTAGT
CGTTTGTAACGGTCCGGAATTCCTTCTCGACCCAGCGTCCGGCTCCTCAT
TTTCCTCTTCGTTATCGTCGTCCTCTTCGTTGACGTTATCTTCTCCCTCG
TCAACGAATCCCGCCCCACCAACTCAGCATGCTGTTGTTGACGCCTCCCT
GGCAATCGCCACCAGATCTAGTAGCACTCCTGCACCTAACAATCAACAGA
ATTTAACCATGACTGCTACTGCTTCTACGAGTACAACGACTGATATTACG
ACGACGACGACGACTGCTCCTCCTCCGGTGAAGCGGTCGACGAAGGACAG
ACACACGAAGGTGGACGGGCGGGGGCGGAGGATAAGAATGCCGGCAACAT
GTGCAGCTAGGGTTTTTCAGCTGACAAGAGAACTCGGGCACAAATCTGAT
GGGGAAACAATCGAGTGGCTGTTACAGCAAGCTGAGCCTGCTATCATAGC
AGCCACTGGCACCGGCACAATCCCCGCCAATTTCTCAACGCTGAATGTCT
CGTTAAGGAGCAGCGGATCCACCCTCTCCGCTCCGCCTTCAAAATCCGCT
CCCCATTCTTTTCACGGCGCTTTGGCCTTGGCCGCGGCGGCTCAGCATCA
TAATCATCACCACCCCTCATATCCTCATCATCCTCATCCGCAATACGAAG
AAGGAGTTCCTCATACTGCTCTGTTAGGGTTTCATCACTCACACGAGCAA
CAGCAGGCACATTTGATGACAGCTTGATCAATTTGGGGAAGGGCATCCGA
GTGAAAGGGGATGTGGGGATAACAAAATTTCTTAGGGAATATATGAACAA
ACGTTTTCGGGGGGTATGTTTCCAGATGAACAAACCAA
back to top