EY711173

Overview
NameEY711173
Unique NameEY711173
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length928
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10515 contig Csv1_Contig10515:1..928. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY711173 vs. ExPASy Swiss-Prot
Match: D2HDH_DANRE (D-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Danio rerio GN=d2hgdh PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 8.261e-21
Identity = 48/80 (60.00%), Postives = 59/80 (73.75%), Query Frame = 3
Query:   78 SMLSPYVTSQIFAQIEPYVYEWTSEHRGSISAEHGLGLMKANKIFYSKSPKTVQLMSSIKKLLDPNGILNPYKVLPHSLS 317
            ++ SP     + A IEPYVYEWTS+ +GSISAEHGLGL K N I+YSK  + V LM SIK +LDP GILNPYK LP +++
Sbjct:  454 NITSPSKDFDLLAAIEPYVYEWTSQWKGSISAEHGLGLKKRNYIYYSKPSEAVALMGSIKAMLDPKGILNPYKTLPDNIN 533          
BLAST of EY711173 vs. ExPASy Swiss-Prot
Match: D2HDH_RAT (D-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Rattus norvegicus GN=D2hgdh PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.250e-18
Identity = 44/75 (58.67%), Postives = 54/75 (72.00%), Query Frame = 3
Query:   96 VTSQIFAQ-----IEPYVYEWTSEHRGSISAEHGLGLMKANKIFYSKSPKTVQLMSSIKKLLDPNGILNPYKVLP 305
            VT++ F+Q     +EPYVY WT+E RGS+SAEHGLG  K N + YSK P  V+LM  +K +LDP GILNPYK LP
Sbjct:  458 VTAEAFSQELLGALEPYVYAWTAEQRGSVSAEHGLGFKKKNVLGYSKPPVAVKLMQQLKAMLDPKGILNPYKTLP 532          
BLAST of EY711173 vs. ExPASy Swiss-Prot
Match: D2HDH_BOVIN (D-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Bos taurus GN=D2HGDH PE=2 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 5.011e-18
Identity = 44/75 (58.67%), Postives = 55/75 (73.33%), Query Frame = 3
Query:   96 VTSQIFAQ-----IEPYVYEWTSEHRGSISAEHGLGLMKANKIFYSKSPKTVQLMSSIKKLLDPNGILNPYKVLP 305
            VTS+ F+      +EPYVYEWT+  RGS+SAEHGLG  K + + YSK P+ +QLM  +K LLDP GILNPYK+LP
Sbjct:  467 VTSEAFSTSLLGALEPYVYEWTAGQRGSVSAEHGLGFKKKDVLGYSKPPEALQLMRQLKALLDPKGILNPYKMLP 541          
BLAST of EY711173 vs. ExPASy Swiss-Prot
Match: D2HDH_MOUSE (D-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Mus musculus GN=D2hgdh PE=2 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 4.242e-17
Identity = 39/67 (58.21%), Postives = 48/67 (71.64%), Query Frame = 3
Query:  105 QIFAQIEPYVYEWTSEHRGSISAEHGLGLMKANKIFYSKSPKTVQLMSSIKKLLDPNGILNPYKVLP 305
            ++   +EPYVY WT+E RGS+SAEHGLG  K + + YSK P  V LM  +K +LDP GILNPYK LP
Sbjct:  466 ELLGALEPYVYAWTAEQRGSVSAEHGLGFKKKDVLGYSKPPVAVTLMQQLKAMLDPKGILNPYKTLP 532          
BLAST of EY711173 vs. ExPASy Swiss-Prot
Match: D2HDH_HUMAN (D-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Homo sapiens GN=D2HGDH PE=1 SV=3)

HSP 1 Score: 86.6557 bits (213), Expect = 2.106e-16
Identity = 38/66 (57.58%), Postives = 49/66 (74.24%), Query Frame = 3
Query:  108 IFAQIEPYVYEWTSEHRGSISAEHGLGLMKANKIFYSKSPKTVQLMSSIKKLLDPNGILNPYKVLP 305
            + A +EP+VYEWT+  +GS+SAEHG+G  K + + YSK P  +QLM  +K LLDP GILNPYK LP
Sbjct:  453 LLAALEPHVYEWTAGQQGSVSAEHGVGFRKRDVLGYSKPPGALQLMQQLKALLDPKGILNPYKTLP 518          
BLAST of EY711173 vs. ExPASy Swiss-Prot
Match: YN53_SCHPO (Putative D-lactate dehydrogenase C713.03, mitochondrial OS=Schizosaccharomyces pombe GN=SPBC713.03 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 3.040e-15
Identity = 36/59 (61.02%), Postives = 46/59 (77.97%), Query Frame = 3
Query:  120 IEPYVYEWTSEHRGSISAEHGLGLMKANKIFYSKSPKTVQLMSSIKKLLDPNGILNPYK 296
            +EP+VYEW S HRGSISAEHGLGL+K   + YSKS + + LM ++K + DPNGI+ PYK
Sbjct:  466 LEPWVYEWVSRHRGSISAEHGLGLLKKPFVGYSKSKEMIHLMKTLKNVFDPNGIMLPYK 524          
BLAST of EY711173 vs. ExPASy Swiss-Prot
Match: DLD2_YEAST (D-lactate dehydrogenase [cytochrome] 2, mitochondrial OS=Saccharomyces cerevisiae GN=DLD2 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.574e-14
Identity = 36/61 (59.02%), Postives = 45/61 (73.77%), Query Frame = 3
Query:  120 IEPYVYEWTSEHRGSISAEHGLGLMKANKIFYSKSPKTVQLMSSIKKLLDPNGILNPYKVL 302
            +EP+VYE+ S   GS+SAEHGLG  K N I YSKSP+ V++M  +K   DPNGILNPYK +
Sbjct:  470 LEPFVYEFVSSKHGSVSAEHGLGFQKKNYIGYSKSPEEVKMMKDLKVHYDPNGILNPYKYI 530          
BLAST of EY711173 vs. ExPASy Swiss-Prot
Match: DLD3_YEAST (D-lactate dehydrogenase [cytochrome] 3 OS=Saccharomyces cerevisiae GN=DLD3 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 8.280e-13
Identity = 34/68 (50.00%), Postives = 46/68 (67.65%), Query Frame = 3
Query:   99 TSQIFAQIEPYVYEWTSEHRGSISAEHGLGLMKANKIFYSKSPKTVQLMSSIKKLLDPNGILNPYKVL 302
            T QI   +EP+VYE+ +  +GSISAEHG+G  K  K+ Y++S   ++ M  IK   DPNGILNPYK +
Sbjct:  429 TKQIEDLLEPFVYEYIASKKGSISAEHGIGFHKKGKLHYTRSDIEIRFMKDIKNHYDPNGILNPYKYI 496          
The following BLAST results are available for this feature:
BLAST of EY711173 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
D2HDH_DANRE8.261e-2160.00D-2-hydroxyglutarate dehydrogenase, mitochondrial ... [more]
D2HDH_RAT2.250e-1858.67D-2-hydroxyglutarate dehydrogenase, mitochondrial ... [more]
D2HDH_BOVIN5.011e-1858.67D-2-hydroxyglutarate dehydrogenase, mitochondrial ... [more]
D2HDH_MOUSE4.242e-1758.21D-2-hydroxyglutarate dehydrogenase, mitochondrial ... [more]
D2HDH_HUMAN2.106e-1657.58D-2-hydroxyglutarate dehydrogenase, mitochondrial ... [more]
YN53_SCHPO3.040e-1561.02Putative D-lactate dehydrogenase C713.03, mitochon... [more]
DLD2_YEAST2.574e-1459.02D-lactate dehydrogenase [cytochrome] 2, mitochondr... [more]
DLD3_YEAST8.280e-1350.00D-lactate dehydrogenase [cytochrome] 3 OS=Saccharo... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-702-004-F10-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711173 ID=EY711173; Name=EY711173; organism=Citrus sinensis; type=EST; length=928bp
TACAGAACACGCGTCCGGTAATTTCTTGTGACTAACAAAAAGGCTTGATT
ATATTCCTCTGCTTTTTCTTTATTATTTCTATGCTTTCTCCATATGTAAC
GTCACAGATTTTTGCACAAATTGAACCTTATGTCTATGAATGGACATCTG
AGCACCGTGGAAGCATTAGTGCTGAGCATGGTCTGGGATTGATGAAAGCT
AATAAGATTTTCTATAGTAAATCACCCAAAACGGTTCAACTAATGAGCTC
AATCAAAAAGTTATTGGATCCCAACGGTATACTCAATCCGTATAAAGTCC
TACCTCACTCCCTCAGTAATCACTGACTGAGGTTAGGCATCTTATTCATG
GGTCATGCCCCATGTCCTTTCTGAACTAGTTCTTTTATTGATTAATATCT
AGAATGTCTGTGGGGAAAGATGGCTTGGATTTACTTATCCACGTAGAAAA
GCTAGGGAAACAATGGGAATCGGGCTAATAGTTAGAAAATCATACGAAAG
CCGGCCATGAAGCTCTGTGGTGTGTAAAAGTTTAGCACTTTCTATCTTTT
TTTTTTTGGGGGGGGGGGGGGGGGGAATTTNATGTGACATAGCGCTTTGC
CCGCCCTCCTATTTTACGTGTCTGACCAAATGGATTTCATTATATTCGCA
ATCCCACTGTTTTTATCCCCCCCCGTCTCCACCACGCGCCGCATACCCTA
CCTTCGAAAGCGCTCTCTTCCTGTTATTCCCTTATTCCGCGCCGCGCGAC
GTGGTGCGGCGTGGCGCGCGGACCGCGCTGACCCGGCTCCATTTCTCTCT
TGTGTGACCCTGATCTTTTCATCAAGCTGGACCTGCACTACAGTCTATCG
TCCAATCCCTGCCAGGTATAACCAGTTCTCATCATTATAACATTCTTCAT
TCATCATACATCCGCCTCACTCCACAGA
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