EY711172

Overview
NameEY711172
Unique NameEY711172
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length922
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY711172 vs. ExPASy Swiss-Prot
Match: C3H44_ARATH (Zinc finger CCCH domain-containing protein 44 OS=Arabidopsis thaliana GN=At3g51120 PE=2 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 7.165e-33
Identity = 61/151 (40.40%), Postives = 92/151 (60.93%), Query Frame = 1
Query:  175 KEKIAEDWCFVCYDGGSLILCDHKDCLKAYHPSCVNEDDSLLETGVKWKCDLHACYECGKAPKFYCLCSPKAICGHCICDAEFAIVKGNKGLCSGCLELVLLIEDNKDVDSHGCKIDFSDPEN-SYFYE-YWQIIKDKERLTSEQVISAYN 621
            KE   ED CF+C+DGG L+LCD ++C KAYHP+C+  D++   T  KW C  H C  C KA  + C     ++C  CI DA++ IV+GN GLC  C++ ++LIE+    D+   K+DF D  +  Y ++ YW  +K++  LT +++  A N
Sbjct:   43 KEDKEEDVCFICFDGGDLVLCDRRNCPKAYHPACIKRDEAFFRTTAKWNCGWHICGTCQKASSYMCYTCTFSVCKRCIKDADYVIVRGNMGLCGTCIKPIMLIENIAQGDNEAVKVDFDDKLSWEYLFKVYWLCLKEELSLTVDELTRANN 193          
BLAST of EY711172 vs. ExPASy Swiss-Prot
Match: NSD3_MOUSE (Histone-lysine N-methyltransferase NSD3 OS=Mus musculus GN=Whsc1l1 PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 2.167e-13
Identity = 50/152 (32.89%), Postives = 62/152 (40.79%), Query Frame = 1
Query:  127 KVESFLKKMGRKKNFNKEKIAEDWCFVCYDGGSLILCDHKDCLKAYHPSCVNEDDSLLETGVKWKCDLHACYECGKAPKFYCLCSPKAICGHCICDAEFAIVKGNKGLCSGCLELVLLIEDNKDVDSHGCKIDFSDPENSYFYEYWQIIKDK 582
            K ++   K  RK     + I ED+CF C DGG L++CD KDC KAYH  C+N          KW+C  H C ECG     +C       C H  C A      G   L    LE  L    +             DP +    EYW  I+ K
Sbjct: 1302 KTKNAKLKKRRKVKAEAKPIHEDYCFQCGDGGELVMCDKKDCPKAYHLLCLNLTQ---PPHGKWECPWHRCDECGSVAVSFC-----EFCPHSFCKAH-----GKGALVPSALEGRLCCSSH-------------DPASPVSPEYWSKIRCK 1427          
BLAST of EY711172 vs. ExPASy Swiss-Prot
Match: NSD3_HUMAN (Histone-lysine N-methyltransferase NSD3 OS=Homo sapiens GN=WHSC1L1 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 6.306e-13
Identity = 35/85 (41.18%), Postives = 46/85 (54.12%), Query Frame = 1
Query:  142 LKKMGRKKNFNKEKIAEDWCFVCYDGGSLILCDHKDCLKAYHPSCVNEDDSLLETGVKWKCDLHACYECGKAPKFYCLCSPKAIC 396
            LK+  RK     +++ ED+CF C DGG L++CD KDC KAYH  C+N          KW+C  H C EC  A   +C   P + C
Sbjct: 1305 LKQKRRKIKTEPKQMHEDYCFQCGDGGELVMCDKKDCPKAYHLLCLNLTQPPYG---KWECPWHQCDECSSAAVSFCEFCPHSFC 1386          
BLAST of EY711172 vs. ExPASy Swiss-Prot
Match: NSD2_HUMAN (Probable histone-lysine N-methyltransferase NSD2 OS=Homo sapiens GN=WHSC1 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.519e-11
Identity = 37/105 (35.24%), Postives = 48/105 (45.71%), Query Frame = 1
Query:  145 KKMGRKKNFNKE--KIAEDWCFVCYDGGSLILCDHKDCLKAYHPSCVNEDDSLLETGVKWKCDLHACYECGKAPKFYCLCSPKAICGHCICDAEFAIVKGNKGLC 453
            KK  R++    E  + +ED CF C DGG L+LCD K C KAYH SC+           KW+C  H C  CGK    +C   P + C        F+     +  C
Sbjct: 1222 KKKTRRRRAKGEGKRQSEDECFRCGDGGQLVLCDRKFCTKAYHLSCLGLGKRPFG---KWECPWHHCDVCGKPSTSFCHLCPNSFCKEHQDGTAFSCTPDGRSYC 1323          
BLAST of EY711172 vs. ExPASy Swiss-Prot
Match: NSD2_MOUSE (Probable histone-lysine N-methyltransferase NSD2 OS=Mus musculus GN=Whsc1 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 5.903e-11
Identity = 35/86 (40.70%), Postives = 44/86 (51.16%), Query Frame = 1
Query:  145 KKMGRKKNFNKE--KIAEDWCFVCYDGGSLILCDHKDCLKAYHPSCVNEDDSLLETGVKWKCDLHACYECGKAPKFYCLCSPKAIC 396
            KK  R++    E  + +ED CF C DGG L+LCD K C KAYH SC+           KW+C  H C  CGK    +C   P + C
Sbjct: 1222 KKKTRRRRAKGEGKRQSEDECFRCGDGGQLVLCDRKFCTKAYHLSCLGLGKRPFG---KWECPWHHCDVCGKPSTSFCHLCPNSFC 1304          
The following BLAST results are available for this feature:
BLAST of EY711172 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
C3H44_ARATH7.165e-3340.40Zinc finger CCCH domain-containing protein 44 OS=A... [more]
NSD3_MOUSE2.167e-1332.89Histone-lysine N-methyltransferase NSD3 OS=Mus mus... [more]
NSD3_HUMAN6.306e-1341.18Histone-lysine N-methyltransferase NSD3 OS=Homo sa... [more]
NSD2_HUMAN4.519e-1135.24Probable histone-lysine N-methyltransferase NSD2 O... [more]
NSD2_MOUSE5.903e-1140.70Probable histone-lysine N-methyltransferase NSD2 O... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-702-004-F09-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711172 ID=EY711172; Name=EY711172; organism=Citrus sinensis; type=EST; length=922bp
CGGACGCGTGGTTTCCAAAGCTCCATTTTCGCATTTTACTTCCTGGTTTC
CTGAAGTTCAAGGATTCATGAGGAGAGTTTTGGGAGTGAAGCCCTTGGCT
TGTTTCTAAATCAGCTGTTTGGGTTTAAAGTTGAGAGCTTTTTGAAGAAG
ATGGGAAGAAAAAAGAATTTTAACAAGGAAAAAATAGCAGAAGATTGGTG
TTTTGTTTGCTATGATGGAGGATCCCTCATACTTTGTGATCACAAAGACT
GTCTTAAAGCTTATCATCCCAGTTGTGTAAATGAGGATGATTCTCTATTG
GAGACTGGAGTAAAGTGGAAGTGCGATTTGCATGCTTGCTACGAATGCGG
CAAAGCTCCAAAATTTTATTGCCTATGTTCCCCAAAGGCCATATGTGGAC
ACTGCATCTGTGATGCGGAGTTTGCGATAGTTAAAGGGAATAAAGGCCTC
TGCAGTGGGTGTTTAGAGCTTGTGTTGCTTATAGAAGACAATAAGGATGT
TGACTCTCATGGGTGCAAGATAGACTTCAGTGATCCAGAAAATAGTTACT
TTTATGAGTATTGGCAGATAATAAAGGATAAGGAACGCTTGACTTCGGAA
CAAGTTATTTCAGCATACAACCGGGCTGAAAAGTGGTGAACTTTATTCTG
GTGCTTCTGATTCATTTCGATCTGATGAACGTAAAGACGATAGTGATGAA
TCTGAAGACGATAGTCAAATTAGGAAAAGGAAGAGATCCAAGGAAAGGTA
TCTGTGGCAATAGTAAAGGGAAGTCAACAAAAAAGAGTTGTTGGAGGGGG
TCTGAACCCCTCCTGGATTCCTTGCCTTCCTTGGAAAGACCCACCCCGAA
TTTTCGAATATGCCTTTACCATATCTTAGGGGATATGTAAAGAAAAAACT
TTTCCCCCAAAAAAAAAAAAAC
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