EY711166

Overview
NameEY711166
Unique NameEY711166
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length958
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4820 contig Csv1_Contig4820:351..1312. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY711166 vs. ExPASy Swiss-Prot
Match: Y4523_ARATH (Probable serine/threonine-protein kinase At4g35230 OS=Arabidopsis thaliana GN=At4g35230 PE=1 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 9.269e-47
Identity = 92/154 (59.74%), Postives = 119/154 (77.27%), Query Frame = 2
Query:   77 LSSLGKACARMDLTAVHDILLKTGYKDEEGAENELSFQEWTQQVQDMLNTKKFGDIAFRDKDFKNAIEYYSKLVSMMSVPSGTVFVRRALSYLMIEQAELALRDAMQAQVCLPEWPTAFYMQALALNKLGMETDAXDMLNDGASFEAKKQNSWR 538
            LS LG+AC+RMDLTA+H IL+ T Y+D+EG  NELSFQEWTQQ++DML+ +K GD +FR+KDFK AI+ YS+ + + ++ S TVF RR+L YL+ +Q + ALRDAMQAQ   P+WPTAFYMQ++AL KL M TDA DMLN+ A  E K+Q   R
Sbjct:  358 LSPLGEACSRMDLTAIHQILVMTHYRDDEGT-NELSFQEWTQQMKDMLDARKRGDQSFREKDFKTAIDCYSQFIDVGTMVSPTVFGRRSLCYLLCDQPDAALRDAMQAQCVYPDWPTAFYMQSVALAKLNMNTDAADMLNEAAQLEEKRQRGGR 510          
BLAST of EY711166 vs. ExPASy Swiss-Prot
Match: Y5126_ARATH (Probable serine/threonine-protein kinase At5g41260 OS=Arabidopsis thaliana GN=At5g41260 PE=1 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 7.865e-38
Identity = 82/151 (54.30%), Postives = 103/151 (68.21%), Query Frame = 2
Query:   71 TMLSSLGKACARMDLTAVHDILLKTGYKDEEGAENELSFQEWTQQVQDMLNTKKFGDIAFRDKDFKNAIEYYSKLVSMMSVPSGTVFVRRALSYLMIEQAELALRDAMQAQVCLPEWPTAFYMQALALNKLGMETDAXDMLNDGASFEAKK 523
            T LS LG+AC R DLTA+H+I+ K GYKD+EGA  ELSFQ WT Q+QD L  KK GD AFR KDF  AIE YS+ + + ++ S TV  R++L YLM +    AL +AMQAQV  P W  A Y+QA+AL+ LG E +A   L DGA  E+K+
Sbjct:  334 TALSPLGEACLRSDLTAIHEIIEKLGYKDDEGATTELSFQMWTDQMQDTLVFKKKGDSAFRHKDFAKAIECYSQFIEVGTMGSPTVHARQSLCYLMNDMPREALNNAMQAQVISPAWHIASYLQAVALSALGQENEAHTALKDGAMLESKR 484          
BLAST of EY711166 vs. ExPASy Swiss-Prot
Match: SSP_ARATH (Probable inactive receptor-like kinase SSP OS=Arabidopsis thaliana GN=SSP PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.618e-33
Identity = 72/149 (48.32%), Postives = 101/149 (67.79%), Query Frame = 2
Query:   77 LSSLGKACARMDLTAVHDILLKTGYKDEEGAENELSFQEWTQQVQDMLNTKKFGDIAFRDKDFKNAIEYYSKLVSMMSVPSGTVFVRRALSYLMIEQAELALRDAMQAQVCLPEWPTAFYMQALALNKLGMETDAXDMLNDGASFEAKK 523
            LS LG+AC RMDL ++H IL+  GY D++    ELSF+EW Q+V+++ + ++ GD AF ++DFK AI  YS+ V   S+   +V+ RR+LSYL  ++ E AL D M AQ   P+WPTAFY+Q++AL KL M TD+ D L + A  E KK
Sbjct:  318 LSPLGEACLRMDLASIHSILVLAGYDDDKDII-ELSFEEWIQEVKELQDVRRNGDRAFVEQDFKTAIACYSQFVEERSLVYPSVYARRSLSYLFCDEPEKALLDGMHAQGVFPDWPTAFYLQSVALAKLDMNTDSADTLKEAALLEVKK 465          
The following BLAST results are available for this feature:
BLAST of EY711166 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
Y4523_ARATH9.269e-4759.74Probable serine/threonine-protein kinase At4g35230... [more]
Y5126_ARATH7.865e-3854.30Probable serine/threonine-protein kinase At5g41260... [more]
SSP_ARATH2.618e-3348.32Probable inactive receptor-like kinase SSP OS=Arab... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-702-004-F02-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711166 ID=EY711166; Name=EY711166; organism=Citrus sinensis; type=EST; length=958bp
ACTGGTCACTCTTTGTCACTATTCCGGAATTCCCTATGCAGACCCACGCG
TCCGTCCAGTAGTACTTCCCACTATGCTATCCTCACTTGGAAAGGCTTGT
GCGAGGATGGATCTTACAGCTGTGCATGATATCTTGTTAAAAACTGGTTA
TAAGGATGAAGAGGGTGCAGAAAATGAGCTTTCATTCCAAGAATGGACAC
AACAAGTTCAAGATATGTTGAATACAAAAAAATTTGGGGATATTGCATTC
AGAGACAAGGATTTCAAAAATGCTATCGAGTATTACTCAAAGCTGGTATC
AATGATGTCTGTTCCTTCGGGTACCGTTTTTGTGAGACGAGCACTGTCGT
ACCTGATGATTGAACAAGCAGAGCTTGCCTTGAGAGATGCCATGCAGGCT
CAGGTTTGCTTACCAGAGTGGCCCACTGCCTTCTACATGCAAGCTCTTGC
ACTTAACAAGCTTGGAATGGAAACTGATGCTCANGACATGCTTAATGATG
GAGCCTCCTTTGAAGCAAAGAAGCAGAATAGCTGGCGCATTTAGACGGAT
GTAAGCAATTTTTTTTTTTAGATATTTAAAGAGGGTTATTTTTTCGGGTG
ACGTCCCCTTCTGTCCTGACCTGATCTGTGGCAAAATAGTTCCTCTCCTA
TCATATATAAAAGAATGTGTAATAAGATCTTTATAGGGAGACAATAAGAA
GAAAGTGACAAACTTGTAGAATTGTTAGTTTATATAATATCCAGCAAGGA
AACTATTTAGCTTGGGACAGCAACAAAAAACAAGACAAAATTCCATCCAC
CCCATCAGATTATACTATTATAAAGTTTCGCGCCACAGCCTAAAATCTGA
AACAAAAATAAAAGGGGGCGCCCCTCAAAAGGAACACAATTTAAACACCG
GGTGTTGGAACNAAAACCTTTTTAAGGGGCCCCAAAAATAAATCTCCGGG
CGGTATTT
back to top