EY711143

Overview
NameEY711143
Unique NameEY711143
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length952
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10511 contig Csv1_Contig10511:1..955. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY711143 vs. ExPASy Swiss-Prot
Match: RL8_SOLLC (60S ribosomal protein L8 OS=Solanum lycopersicum GN=RPL8 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.743e-32
Identity = 76/102 (74.51%), Postives = 80/102 (78.43%), Query Frame = 1
Query:  658 RVKLPSGAKKIIPSGCRAMIGQVAGGRRTEKALLKAGNAYHKFRVKRNCWPKVRGVAMNPVELLMEEVT-TGTGPASTGKRDAPPAQKVVLIA---PGRLVG 951
            RVKLPSGAKKI+PSGCRAMIGQVAGG RTEK +LKAGNAYHK+RVKRNCWPKVRGVAMNPVE           G AST +RDAPP QKV LIA    GRL G
Sbjct:  147 RVKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAARRTGRLRG 248          
BLAST of EY711143 vs. ExPASy Swiss-Prot
Match: RL83_ARATH (60S ribosomal protein L8-3 OS=Arabidopsis thaliana GN=RPL8C PE=2 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 3.169e-31
Identity = 73/102 (71.57%), Postives = 80/102 (78.43%), Query Frame = 1
Query:  658 RVKLPSGAKKIIPSGCRAMIGQVAGGRRTEKALLKAGNAYHKFRVKRNCWPKVRGVAMNPVELLMEEVT-TGTGPASTGKRDAPPAQKVVLIA---PGRLVG 951
            R+KLPSG+KKI+PSGCRAMIGQVAGG RTEK +LKAGNAYHK+RVKRNCWPKVRGVAMNPVE           G AST +RDAPP +KV LIA    GRL G
Sbjct:  147 RIKLPSGSKKIVPSGCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGKKVGLIAARRTGRLRG 248          
BLAST of EY711143 vs. ExPASy Swiss-Prot
Match: RL8_TOBAC (60S ribosomal protein L8 OS=Nicotiana tabacum GN=RPL8 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 9.220e-31
Identity = 72/99 (72.73%), Postives = 77/99 (77.78%), Query Frame = 1
Query:  658 RVKLPSGAKKIIPSGCRAMIGQVAGGRRTEKALLKAGNAYHKFRVKRNCWPKVRGVAMNPVELLMEEVT-TGTGPASTGKRDAPPAQKVVLIAPGRLVG 951
            R+KLPSG+KKI+PSGCR MIGQVAGG RTEK +LKAGNAYHK+RVKRNCWPKVRGVAMNPVE           G AST  RDAPP QKV LIA GR  G
Sbjct:  147 RIKLPSGSKKIVPSGCRRMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVARDAPPGQKVGLIA-GRRTG 244          
BLAST of EY711143 vs. ExPASy Swiss-Prot
Match: RL81_ARATH (60S ribosomal protein L8-1 OS=Arabidopsis thaliana GN=RPL8A PE=2 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 1.573e-30
Identity = 73/102 (71.57%), Postives = 79/102 (77.45%), Query Frame = 1
Query:  658 RVKLPSGAKKIIPSGCRAMIGQVAGGRRTEKALLKAGNAYHKFRVKRNCWPKVRGVAMNPVELLMEEVT-TGTGPASTGKRDAPPAQKVVLIA---PGRLVG 951
            R+KLPSG+KKI+PSGCRAMIGQVAGG RTEK +LKAGNAYHK+RVKRN WPKVRGVAMNPVE           G AST +RDAPP QKV LIA    GRL G
Sbjct:  147 RIKLPSGSKKIVPSGCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNSWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAARRTGRLRG 248          
BLAST of EY711143 vs. ExPASy Swiss-Prot
Match: RL8_ANOGA (60S ribosomal protein L8 OS=Anopheles gambiae GN=RpL8 PE=2 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 1.989e-25
Identity = 63/96 (65.62%), Postives = 70/96 (72.92%), Query Frame = 1
Query:  658 RVKLPSGAKKIIPSGCRAMIGQVAGGRRTEKALLKAGNAYHKFRVKRNCWPKVRGVAMNPVELLMEEVT-TGTGPASTGKRDAPPAQKVVLIAPGR 942
            RVKLPSGAKK++PS  RAMIG VAGG R +K +LKAG AYHK++VKRNCWPKVRGVAMNPVE           G AST KR  PP +KV LIA  R
Sbjct:  147 RVKLPSGAKKVLPSANRAMIGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTPPGRKVGLIAARR 242          
BLAST of EY711143 vs. ExPASy Swiss-Prot
Match: RL82_ARATH (60S ribosomal protein L8-2 OS=Arabidopsis thaliana GN=RPL8B PE=2 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 3.394e-25
Identity = 63/96 (65.62%), Postives = 68/96 (70.83%), Query Frame = 1
Query:  658 RVKLPSGAKKIIPSGCRAMIGQVAGGRRTEKALLKAGNAYHKFRVKRNCWPKVRGVAMNPVELLMEEVT-TGTGPASTGKRDAPPAQKVVLIAPGR 942
            RVKLPSG+KKI+PS CRAMIGQVAGG RTEK  LKAGNAYHK++ KRNCWP VRGVAMNPVE           G AST +RD     KV  IA  R
Sbjct:  148 RVKLPSGSKKILPSACRAMIGQVAGGGRTEKPFLKAGNAYHKYKAKRNCWPVVRGVAMNPVEHPHGGGNHQHIGHASTVRRDKSAGAKVGQIAARR 243          
BLAST of EY711143 vs. ExPASy Swiss-Prot
Match: RL8_AEDAL (60S ribosomal protein L8 OS=Aedes albopictus GN=RpL8 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 2.200e-24
Identity = 61/96 (63.54%), Postives = 69/96 (71.88%), Query Frame = 1
Query:  658 RVKLPSGAKKIIPSGCRAMIGQVAGGRRTEKALLKAGNAYHKFRVKRNCWPKVRGVAMNPVELLMEEVT-TGTGPASTGKRDAPPAQKVVLIAPGR 942
            RVKLPSGAKK++PS  RAM+G VAGG R +K +LKAG AY K++VKRNCWPKVRGVAMNPVE           G AST KR  PP +KV LIA  R
Sbjct:  147 RVKLPSGAKKVLPSANRAMVGIVAGGGRIDKPILKAGRAYRKYKVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTPPGRKVGLIAARR 242          
BLAST of EY711143 vs. ExPASy Swiss-Prot
Match: RL8_ICTPU (60S ribosomal protein L8 OS=Ictalurus punctatus GN=rpl8 PE=2 SV=3)

HSP 1 Score: 108.227 bits (269), Expect = 7.076e-23
Identity = 61/102 (59.80%), Postives = 71/102 (69.61%), Query Frame = 1
Query:  658 RVKLPSGAKKIIPSGCRAMIGQVAGGRRTEKALLKAGNAYHKFRVKRNCWPKVRGVAMNPVELLMEEVT-TGTGPASTGKRDAPPAQKVVLIA---PGRLVG 951
            RVKLPSGAKK+I S  RA++G VAGG R +K +LKAG AYHK++VKRNCWP+VRGVAMNPVE           G  ST +RD P  +KV LIA    GRL G
Sbjct:  147 RVKLPSGAKKVISSTNRAVVGVVAGGGRIDKPILKAGRAYHKYKVKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDVPAGRKVGLIAARRTGRLRG 248          
BLAST of EY711143 vs. ExPASy Swiss-Prot
Match: RL8_XENTR (60S ribosomal protein L8 OS=Xenopus tropicalis GN=rpl8 PE=2 SV=3)

HSP 1 Score: 107.842 bits (268), Expect = 9.241e-23
Identity = 60/102 (58.82%), Postives = 71/102 (69.61%), Query Frame = 1
Query:  658 RVKLPSGAKKIIPSGCRAMIGQVAGGRRTEKALLKAGNAYHKFRVKRNCWPKVRGVAMNPVELLMEEVT-TGTGPASTGKRDAPPAQKVVLIA---PGRLVG 951
            RVKLPSG+KK+I S  RA++G VAGG R +K +LKAG AYHK++ KRNCWP+VRGVAMNPVE           G  ST +RDAP  +KV LIA    GRL G
Sbjct:  147 RVKLPSGSKKVISSANRAIVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAARRTGRLRG 248          
BLAST of EY711143 vs. ExPASy Swiss-Prot
Match: RL8_XENLA (60S ribosomal protein L8 OS=Xenopus laevis GN=rpl8 PE=2 SV=3)

HSP 1 Score: 107.842 bits (268), Expect = 9.241e-23
Identity = 60/102 (58.82%), Postives = 71/102 (69.61%), Query Frame = 1
Query:  658 RVKLPSGAKKIIPSGCRAMIGQVAGGRRTEKALLKAGNAYHKFRVKRNCWPKVRGVAMNPVELLMEEVT-TGTGPASTGKRDAPPAQKVVLIA---PGRLVG 951
            RVKLPSG+KK+I S  RA++G VAGG R +K +LKAG AYHK++ KRNCWP+VRGVAMNPVE           G  ST +RDAP  +KV LIA    GRL G
Sbjct:  147 RVKLPSGSKKVISSANRAIVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAARRTGRLRG 248          
The following BLAST results are available for this feature:
BLAST of EY711143 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
RL8_SOLLC3.743e-3274.5160S ribosomal protein L8 OS=Solanum lycopersicum G... [more]
RL83_ARATH3.169e-3171.5760S ribosomal protein L8-3 OS=Arabidopsis thaliana... [more]
RL8_TOBAC9.220e-3172.7360S ribosomal protein L8 OS=Nicotiana tabacum GN=R... [more]
RL81_ARATH1.573e-3071.5760S ribosomal protein L8-1 OS=Arabidopsis thaliana... [more]
RL8_ANOGA1.989e-2565.6360S ribosomal protein L8 OS=Anopheles gambiae GN=R... [more]
RL82_ARATH3.394e-2565.6360S ribosomal protein L8-2 OS=Arabidopsis thaliana... [more]
RL8_AEDAL2.200e-2463.5460S ribosomal protein L8 OS=Aedes albopictus GN=Rp... [more]
RL8_ICTPU7.076e-2359.8060S ribosomal protein L8 OS=Ictalurus punctatus GN... [more]
RL8_XENTR9.241e-2358.8260S ribosomal protein L8 OS=Xenopus tropicalis GN=... [more]
RL8_XENLA9.241e-2358.8260S ribosomal protein L8 OS=Xenopus laevis GN=rpl8... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-004-C09-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711143 ID=EY711143; Name=EY711143; organism=Citrus sinensis; type=EST; length=952bp
ATTTGTCATCTTTTTCACTATTCCGGAATTCCTACAACAACCACGCGTCC
GAGGGTAGTTTGCCANACAAAAAAGTGTTTTGAACAAATTTAATGATGTT
CTTTTAGAGTTATGTCTTTTCGTCTTTAAGATTGTGCAAGCACCAAGATG
TAGTGCAAATTGAATTTGTGGGTTTCTTTTAAGTTGTATACACCTAGGAT
GTGAAGCCATGTTTATGTAAGCAATTCTATCGTGCATTGATTATCCCTTG
GTTTCTCTGTCATTGATAAATTTTTACTTGCTGTTTGGTTTCTTAATGAA
GCTAATAGAATAGTATAGAAAGATTTTGAAGGGCTTTTGGACTTGGGTGG
GGTTTAATGTGTGTTGTTAATTTTTGTAAGGTGGAAGGACTGGTTTCCTT
TCCAAATTTAGGAGATAAGGCGACCACTATTGTAGAATGTTGCAATGTCT
CTTAAATTTAATATGGAGTTGATTGTGTGGTTGCAAAAACAAATTTTAGT
GGAATTTGGGACTTTATTCTTTCAGTAATCTTTCTCTGTGATGTCTTAAA
ATGTTTATATTGTTTGTTTCTTCTGTTGGTTGTTTCTGAAACTGAAACAG
TCAGTATTCCCATTTCCCCAAAGTTAGAATACGTGACTTTTGGTATCATA
TCCATACAGGGTCAAGCTTCCATCTGGTGCCAAAAAGATTATTCCAAGTG
GCTGCAGAGCTATGATTGGGCAGGTTGCCGGCGGAAGGAGGACTGAGAAA
GCCCTTCTCAAAGCTGGTAATGCATACCACAAATTCAGAGTGAAGCGAAA
CTGCTGGCCTAAGGTGCGTGGTGTGGCCATGAACCCAGTGGAGCTCCTCA
TGGAGGAGGTAACCACAGGCACTGGTCCTGCTAGCACTGGTAAGCGTGAT
GCTCCCCCTGCCCAGAAGGTTGTCTTAATTGCACCAGGAAGACTGGTCGG
CT
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