EY711127 | Citrus Genome Database

Overview


Name	EY711127
Unique Name	EY711127
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	950

Libraries


Library Name	Type
Sweet orange fruit, development stadium (3 of 6)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

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BLAST of EY711127 vs. ExPASy Swiss-Prot
Match: PABP2_ARATH (Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1)

HSP 1 Score: 262.692 bits (670), Expect = 2.234e-69
Identity = 145/265 (54.72%), Postives = 175/265 (66.04%), Query Frame = 2

Query:  167 MAQIQVQHQ------AQMSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFXFVQFENKESAQNAI**LMACLLMIKQCLLGTFFRSRKREL*QLKPNFI-TYLSKPC*VNYR*GFEEFFW*VWNNYQCXXDEGWKWKSKGFWIGEFENA 940
            MAQ+Q+Q Q      A ++     + GA+  QF  TSLYVGDLDFNVTDSQL+D F Q+G V++VRVCRDL TRRSLGYGYVN+ NP DAARA+  LN+ PL  K IR+MYSHRDPS+R+SG GNIFIKNLD+SIDHKALHDTFSSFGNI+SCK+A D SGQSKG+ FVQ+ N+ESAQ AI  L   LL  KQ  +G F R ++R+    K  F   Y+            +  F            +  + KSKGF    FENA
Sbjct:    1 MAQVQLQGQTPNGSTAAVTSAPATSGGATATQFGNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQELNYIPLYGKPIRVMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENA 265

HSP 2 Score: 100.138 bits (248), Expect = 1.917e-20
Identity = 53/149 (35.57%), Postives = 85/149 (57.05%), Query Frame = 2

Query:  257 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI----MYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFXFVQFENKESAQNAI 691
            ++++ +LD ++    L+D FS  G ++S +V  D S+ +S GYG+V YAN   A +A++ LN   LN+K + +        RD +  K+   N+++KNL +S     L + F  +G I S  +  DG G+SKGF FV FEN + A  A+
Sbjct:  125 NIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVD-SSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAV 272

HSP 3 Score: 88.9669 bits (219), Expect = 4.420e-17
Identity = 56/170 (32.94%), Postives = 89/170 (52.35%), Query Frame = 2

Query:  230 ASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI----MYSHRDPSIR------------KSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFXFVQFENKESAQNAI 691
            ++ N+   T++YV +L  + TD  L + F + G++ S  V +D    +S G+G+VN+ N  DAARA++ LN    ++K   +      S R+  +R            K  + N+++KNLD SI  + L + FS FG + S K+  D +G SKG  FV F   E A  A+
Sbjct:  207 STANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKD-GEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAM 375

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BLAST of EY711127 vs. ExPASy Swiss-Prot
Match: PABP5_ARATH (Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5 PE=1 SV=2)

HSP 1 Score: 202.216 bits (513), Expect = 2.020e-58
Identity = 110/186 (59.14%), Postives = 137/186 (73.66%), Query Frame = 2

Query:  218 VAAGASGNQFLTT----SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFXFVQFENKESAQNAI**LMACLLMIKQCLLGTFFRSRKR 763
            VAA A+  + L T    SLYVGDLD +V +S L DLF+QV  V ++RVCRDL T RSLGY YVN+ANP DA+RA++ LN+ P+ ++ IRIM S+RDPS R SG GN+FIKNLD SID+KAL++TFSSFG ILSCK+A D  G+SKG+ FVQFE +E+AQ AI  L   LL  KQ  +G F R + R
Sbjct:   29 VAAAAAAAEALQTHPNSSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDL-THRSLGYAYVNFANPEDASRAMESLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDR 213

HSP 2 Score: 45.8246 bits (107), Expect = 2.020e-58
Identity = 20/42 (47.62%), Postives = 29/42 (69.05%), Query Frame = 3

Query:  804 QNLAESTTDEDLRNFFGEYGTITSAXXMRDGNGNPRXFGLGN 929
            +NL +  TD++L+  FG+YG I+SA  M+D +GN R FG  N
Sbjct:  230 KNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVN 271

HSP 3 Score: 88.5817 bits (218), Expect = 5.773e-17
Identity = 51/151 (33.77%), Postives = 82/151 (54.30%), Query Frame = 2

Query:  257 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTG------NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFXFVQFENKESAQNAI 691
            ++++ +LD ++ +  LY+ FS  G +LS +V  D+   RS GYG+V +     A  A+D LN   LN+K + + +  R     +S +G      N+++KNL K I    L  TF  +G+I S  +  D SG S+ F FV F + E+A  A+
Sbjct:  133 NVFIKNLDASIDNKALYETFSSFGTILSCKVAMDV-VGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAV 282

HSP 4 Score: 84.3445 bits (207), Expect = 1.089e-15
Identity = 50/158 (31.65%), Postives = 82/158 (51.90%), Query Frame = 2

Query:  254 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI----MYSHRDPSIR------------KSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFXFVQFENKESA 679
            T++YV +L   +TD +L   F + G + S  V +D S   S  +G+VN+ +P  AA A++ +N   L    + +      S R+  +R            K    N+++KNLD S++ + L + FS +GN+ SCK+  +  G S+GF FV + N E A
Sbjct:  225 TNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGN-SRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEA 381

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BLAST of EY711127 vs. ExPASy Swiss-Prot
Match: PABP_NEOFI (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=pab1 PE=3 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 1.292e-57
Identity = 105/192 (54.69%), Postives = 138/192 (71.88%), Query Frame = 2

Query:  221 AAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFXFVQFENKESAQNAI**LMACLLMIKQCLLGTFF--RSRKREL*QLKPNF 790
            +A  S NQ  + SLYVG+LD +VT++ LY+LFS +GQV S+RVCRD  TRRSLGY YVNY N AD  RAL+ LN+T +  K  RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF++FGNILSCK+A D  G SKG+ FV +E  E+A NAI  +   LL  K+  +G     + R+ +  ++K NF
Sbjct:   41 SATPSANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANF 232

HSP 2 Score: 40.0466 bits (92), Expect = 1.292e-57
Identity = 18/42 (42.86%), Postives = 24/42 (57.14%), Query Frame = 3

Query:  804 QNLAESTTDEDLRNFFGEYGTITSAXXMRDGNGNPRXFGLGN 929
            +N+ +  TDE+ R  F ++G ITSA   RD  G  R FG  N
Sbjct:  238 KNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVN 279

HSP 3 Score: 83.1889 bits (204), Expect = 2.425e-15
Identity = 47/151 (31.13%), Postives = 82/151 (54.30%), Query Frame = 2

Query:  257 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMY--SHRDPSIR----KSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFXFVQFENKESAQNAI 691
            ++++ +LD  + +  L+D F+  G +LS +V +D     S GYG+V+Y     A  A+  +N   LN+K + + +  S +D   +    K+   N++IKN+D+ +  +     F  FG I S  ++ D  G+S+GF FV F   +SAQ A+
Sbjct:  141 NVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHDSAQAAV 290

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BLAST of EY711127 vs. ExPASy Swiss-Prot
Match: PABP3_ARATH (Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3 PE=2 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 1.293e-57
Identity = 110/198 (55.56%), Postives = 138/198 (69.70%), Query Frame = 2

Query:  170 AQIQVQHQAQMSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFXFVQFENKESAQNAI**LMACLLMIKQCLLGTFFRSRKR 763
            AQ  VQ    +  P+ V      +    +SLY GDLD  VT++ L+DLF  V  V+SVRVCRD   RRSLGY Y+N++NP DA RA++ LN+TPL ++ IRIM S+RDPS R SG GNIFIKNLD SID+KAL +TFSSFG ILSCK+A D +G+SKG+ FVQFE +ESAQ AI  L   L+  KQ  +G F R ++R
Sbjct:   23 AQTSVQVPVSIPLPSPVVVADQTHP--NSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRD-QNRRSLGYAYINFSNPNDAYRAMEALNYTPLFDRPIRIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQER 217

HSP 2 Score: 43.1282 bits (100), Expect = 1.293e-57
Identity = 19/44 (43.18%), Postives = 29/44 (65.91%), Query Frame = 3

Query:  804 QNLAESTTDEDLRNFFGEYGTITSAXXMRDGNGNPRXFGLGNLK 935
            +NL +   +++LR  FG++G I+SA  MRD +GN R FG  N +
Sbjct:  234 KNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFE 277

HSP 3 Score: 88.9669 bits (219), Expect = 4.420e-17
Identity = 53/151 (35.10%), Postives = 80/151 (52.98%), Query Frame = 2

Query:  257 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKS------IRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFXFVQFENKESAQNAI 691
            ++++ +LD ++ +  L++ FS  G +LS +V  D+ T RS GYG+V +     A  A+D LN   +N+K       IR     RD +       N+++KNL K I    L  TF  FG I S  +  D SG S+ F FV FE  E+A +A+
Sbjct:  137 NIFIKNLDASIDNKALFETFSSFGTILSCKVAMDV-TGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAV 286

HSP 4 Score: 77.7962 bits (190), Expect = 1.019e-13
Identity = 50/162 (30.86%), Postives = 82/162 (50.62%), Query Frame = 2

Query:  254 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI----MYSHRDPSIR------------KSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFXFVQFENKESAQNAI 691
            T++YV +L   + + +L   F + G + S  V RD S   S  +G+VN+     AA A++ +N   L +  + +      S R+  +R            KS   N+++KNLD S+D + L + FS +GN+ S K+  +  G S+GF FV + N E A  A+
Sbjct:  229 TNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGN-SRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRAL 389

[Close]

BLAST of EY711127 vs. ExPASy Swiss-Prot
Match: PABP_ASPFU (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus fumigatus GN=pab1 PE=3 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 8.270e-57
Identity = 103/188 (54.79%), Postives = 136/188 (72.34%), Query Frame = 2

Query:  233 SGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFXFVQFENKESAQNAI**LMACLLMIKQCLLGTFF--RSRKREL*QLKPNF 790
            S +Q  + SLYVG+LD +VT++ LY+LFS +GQV S+RVCRD  TRRSLGY YVNY N AD  RAL+ LN+T +  K  RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF++FGNILSCK+A D  G SKG+ FV +E  E+A NAI  +   LL  K+  +G     + R+ +  ++K NF
Sbjct:   45 SASQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANF 232

HSP 2 Score: 40.0466 bits (92), Expect = 8.270e-57
Identity = 18/42 (42.86%), Postives = 24/42 (57.14%), Query Frame = 3

Query:  804 QNLAESTTDEDLRNFFGEYGTITSAXXMRDGNGNPRXFGLGN 929
            +N+ +  TDE+ R  F ++G ITSA   RD  G  R FG  N
Sbjct:  238 KNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVN 279

HSP 3 Score: 83.1889 bits (204), Expect = 2.425e-15
Identity = 47/151 (31.13%), Postives = 82/151 (54.30%), Query Frame = 2

Query:  257 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMY--SHRDPSIR----KSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFXFVQFENKESAQNAI 691
            ++++ +LD  + +  L+D F+  G +LS +V +D     S GYG+V+Y     A  A+  +N   LN+K + + +  S +D   +    K+   N++IKN+D+ +  +     F  FG I S  ++ D  G+S+GF FV F   +SAQ A+
Sbjct:  141 NVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHDSAQAAV 290

[Close]

BLAST of EY711127 vs. ExPASy Swiss-Prot
Match: PABP_ASPCL (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus clavatus GN=pab1 PE=3 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 1.833e-56
Identity = 103/188 (54.79%), Postives = 136/188 (72.34%), Query Frame = 2

Query:  233 SGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFXFVQFENKESAQNAI**LMACLLMIKQCLLGTFF--RSRKREL*QLKPNF 790
            + NQ  + SLYVG+LD +VT++ LY+LFS +GQV S+RVCRD  TRRSLGY YVNY N AD  RAL+ LN+T +  K  RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF++FGNILSCK+A D  G SKG+ FV +E  E+A NAI  +   LL  K+  +G     + R+ +  ++K NF
Sbjct:   44 NNNQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFDEMKANF 231

HSP 2 Score: 37.7354 bits (86), Expect = 1.833e-56
Identity = 17/42 (40.48%), Postives = 23/42 (54.76%), Query Frame = 3

Query:  804 QNLAESTTDEDLRNFFGEYGTITSAXXMRDGNGNPRXFGLGN 929
            +N+    T+E+ R  F ++G ITSA   RD  G  R FG  N
Sbjct:  237 KNIDPDVTEEEFRKIFEQFGEITSATLSRDPEGKSRGFGFVN 278

HSP 3 Score: 83.1889 bits (204), Expect = 2.425e-15
Identity = 48/151 (31.79%), Postives = 81/151 (53.64%), Query Frame = 2

Query:  257 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMY--SHRDPSIR----KSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFXFVQFENKESAQNAI 691
            ++++ +LD  + +  L+D F+  G +LS +V +D     S GYG+V+Y     A  A+  +N   LN+K + + +  S +D   +    K+   NI+IKN+D  +  +     F  FG I S  ++ D  G+S+GF FV +   ESAQ A+
Sbjct:  140 NVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFDEMKANFTNIYIKNIDPDVTEEEFRKIFEQFGEITSATLSRDPEGKSRGFGFVNYSTHESAQAAV 289

[Close]

BLAST of EY711127 vs. ExPASy Swiss-Prot
Match: PABP4_HUMAN (Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 3.119e-56
Identity = 103/179 (57.54%), Postives = 132/179 (73.74%), Query Frame = 2

Query:  230 ASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFXFVQFENKESAQNAI**LMACLLMIKQCLLGTFFRSRKRE 766
            A+ + +   SLYVGDL  +VT++ LY+ FS  G VLS+RVCRD+ TRRSLGY YVN+  PADA RALD +NF  +  K IRIM+S RDPS+RKSG GN+FIKNLDKSID+KAL+DTFS+FGNILSCK+  D +G SKG+ FV FE +E+A  AI  +   LL  ++  +G F   ++RE
Sbjct:    3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE 180

HSP 2 Score: 36.1946 bits (82), Expect = 3.119e-56
Identity = 15/39 (38.46%), Postives = 20/39 (51.28%), Query Frame = 3

Query:  804 QNLAESTTDEDLRNFFGEYGTITSAXXMRDGNGNPRXFG 920
            +N  E   DE L+  F ++G   S   MRD NG  + FG
Sbjct:  196 KNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFG 234

HSP 3 Score: 88.9669 bits (219), Expect = 4.420e-17
Identity = 59/171 (34.50%), Postives = 89/171 (52.05%), Query Frame = 2

Query:  227 GASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSI----------------RIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFXFVQFENKESAQNAI 691
            GA   +F  T++Y+ +    V D  L +LFSQ G+ LSV+V RD    +S G+G+V+Y    DA +A++ +N   ++ K I                R     +   I +    N++IKNLD +ID + L   FS FG+I S K+  +  G+SKGF FV F + E A  A+
Sbjct:  184 GAKAKEF--TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAV 350

HSP 4 Score: 85.8853 bits (211), Expect = 3.742e-16
Identity = 48/151 (31.79%), Postives = 83/151 (54.97%), Query Frame = 2

Query:  257 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI-MYSHRDPSIRKSGTG-----NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFXFVQFENKESAQNAI 691
            ++++ +LD ++ +  LYD FS  G +LS +V  D     S GY +V++     A +A++ +N   LN++ + +  +  R     + G       N++IKN  + +D ++L + FS FG  LS K+  D +G+SKGF FV +E  E A  A+
Sbjct:  100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAV 248

[Close]

BLAST of EY711127 vs. ExPASy Swiss-Prot
Match: PABP_ASPOR (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus oryzae GN=pab1 PE=3 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 4.060e-56
Identity = 101/182 (55.49%), Postives = 133/182 (73.08%), Query Frame = 2

Query:  251 TTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFXFVQFENKESAQNAI**LMACLLMIKQCLLGTFF--RSRKREL*QLKPNF 790
            + SLYVG+LD +VT++ LY+LFS +GQV S+RVCRD  TRRSLGY YVNY N AD  RAL+ LN+T +  K  RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF++FGNILSCK+A D  G SKG+ FV +E  E+A NAI  +   LL  K+  +G     + R+ +  ++K NF
Sbjct:   48 SASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANF 229

HSP 2 Score: 38.5058 bits (88), Expect = 4.060e-56
Identity = 17/42 (40.48%), Postives = 24/42 (57.14%), Query Frame = 3

Query:  804 QNLAESTTDEDLRNFFGEYGTITSAXXMRDGNGNPRXFGLGN 929
            +N+ +  T+E+ R  F ++G ITSA   RD  G  R FG  N
Sbjct:  235 KNIDQDVTEEEFRELFEKFGEITSATLSRDQEGKSRGFGFVN 276

HSP 3 Score: 85.8853 bits (211), Expect = 3.742e-16
Identity = 48/151 (31.79%), Postives = 83/151 (54.97%), Query Frame = 2

Query:  257 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMY--SHRDPSIR----KSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFXFVQFENKESAQNAI 691
            ++++ +LD  + +  L+D F+  G +LS +V +D     S GYG+V+Y     A  A+  +N   LN+K + + +  S +D   +    K+   N++IKN+D+ +  +   + F  FG I S  ++ D  G+S+GF FV F   ESAQ A+
Sbjct:  138 NVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQDVTEEEFRELFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAV 287

[Close]

BLAST of EY711127 vs. ExPASy Swiss-Prot
Match: PABP_ASPTN (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=pab1 PE=3 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 4.060e-56
Identity = 104/191 (54.45%), Postives = 137/191 (71.73%), Query Frame = 2

Query:  224 AGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFXFVQFENKESAQNAI**LMACLLMIKQCLLGTFF--RSRKREL*QLKPNF 790
            A  S +Q  + SLYVG+LD +VT++ LY+LFS +GQV S+RVCRD  TRRSLGY YVNY N AD  RAL+ LN+T +  K  RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF++FGNILSCK+A D  G SKG+ FV +E  E+A NAI  +   LL  K+  +G     + R+ +  ++K NF
Sbjct:   38 AAPSTSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANF 228

HSP 2 Score: 37.3502 bits (85), Expect = 4.060e-56
Identity = 17/42 (40.48%), Postives = 24/42 (57.14%), Query Frame = 3

Query:  804 QNLAESTTDEDLRNFFGEYGTITSAXXMRDGNGNPRXFGLGN 929
            +NL +  ++E+ R  F ++G ITSA   RD  G  R FG  N
Sbjct:  234 KNLDQEISEEEFRQMFEKFGEITSATLSRDQEGKSRGFGFVN 275

HSP 3 Score: 84.3445 bits (207), Expect = 1.089e-15
Identity = 48/151 (31.79%), Postives = 82/151 (54.30%), Query Frame = 2

Query:  257 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMY--SHRDPSIR----KSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFXFVQFENKESAQNAI 691
            ++++ +LD  + +  L+D F+  G +LS +V +D     S GYG+V+Y     A  A+  +N   LN+K + + +  S +D   +    K+   N++IKNLD+ I  +     F  FG I S  ++ D  G+S+GF FV +   +SAQ A+
Sbjct:  137 NVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNLDQEISEEEFRQMFEKFGEITSATLSRDQEGKSRGFGFVNYSTHDSAQAAV 286

[Close]

BLAST of EY711127 vs. ExPASy Swiss-Prot
Match: PABP_ASPNC (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=pab1 PE=3 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 5.295e-56
Identity = 103/188 (54.79%), Postives = 136/188 (72.34%), Query Frame = 2

Query:  233 SGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFXFVQFENKESAQNAI**LMACLLMIKQCLLGTFF--RSRKREL*QLKPNF 790
            + NQ  + SLYVG+LD +VT++ LY+LFS +GQV S+RVCRD  TRRSLGY YVNY N AD  RAL+ LN+T +  K  RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF++FGNILSCK+A D  G SKG+ FV +E  E+A NAI  +   LL  K+  +G     + R+ +  ++K NF
Sbjct:   47 AANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANF 234

HSP 2 Score: 36.1946 bits (82), Expect = 5.295e-56
Identity = 17/42 (40.48%), Postives = 22/42 (52.38%), Query Frame = 3

Query:  804 QNLAESTTDEDLRNFFGEYGTITSAXXMRDGNGNPRXFGLGN 929
            +NL     D++ R  F ++G ITSA   RD  G  R FG  N
Sbjct:  240 KNLDSEIDDDEFRKMFEKFGEITSATLSRDQEGKSRGFGFVN 281

HSP 3 Score: 87.0409 bits (214), Expect = 1.680e-16
Identity = 51/151 (33.77%), Postives = 81/151 (53.64%), Query Frame = 2

Query:  257 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMY--SHRDPSIR----KSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFXFVQFENKESAQNAI 691
            ++++ +LD  + +  L+D F+  G +LS +V +D     S GYG+V+Y     A  A+  +N   LN+K + + +  S +D   +    K+   N++IKNLD  ID       F  FG I S  ++ D  G+S+GF FV F   ESAQ A+
Sbjct:  143 NVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAV 292

The following BLAST results are available for this feature:

BLAST of EY711127 vs. ExPASy Swiss-Prot

BLAST of EY711127 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 123


Match Name	E-value	Identity	Description
PABP2_ARATH	2.234e-69	54.72	Polyadenylate-binding protein 2 OS=Arabidopsis tha...	[more]
PABP5_ARATH	2.020e-58	59.14	Polyadenylate-binding protein 5 OS=Arabidopsis tha...	[more]
PABP_NEOFI	1.292e-57	54.69	Polyadenylate-binding protein, cytoplasmic and nuc...	[more]
PABP3_ARATH	1.293e-57	55.56	Polyadenylate-binding protein 3 OS=Arabidopsis tha...	[more]
PABP_ASPFU	8.270e-57	54.79	Polyadenylate-binding protein, cytoplasmic and nuc...	[more]
PABP_ASPCL	1.833e-56	54.79	Polyadenylate-binding protein, cytoplasmic and nuc...	[more]
PABP4_HUMAN	3.119e-56	57.54	Polyadenylate-binding protein 4 OS=Homo sapiens GN...	[more]
PABP_ASPOR	4.060e-56	55.49	Polyadenylate-binding protein, cytoplasmic and nuc...	[more]
PABP_ASPTN	4.060e-56	54.45	Polyadenylate-binding protein, cytoplasmic and nuc...	[more]
PABP_ASPNC	5.295e-56	54.79	Polyadenylate-binding protein, cytoplasmic and nuc...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C3-702-004-B03-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY711127 ID=EY711127; Name=EY711127; organism=Citrus sinensis; type=EST; length=950bp
CACTGGACGCCTGCGGCACTTGTCCGGAATTCCCTTTCCGACCCACGCGT
CCGATAGAATCAGATTATCTATCCTGTTATCTCTCTAGATTTTTATTTGA
GAACTAGCAAGAGAAGAGGGAAATAAAAAAGCCAAAAAAAAAAAGAAGGA
TCTAGAAGTGGTAGTGATGGCACAGATTCAGGTGCAACATCAAGCGCAAA
TGTCGGGGCCAAACGGAGTGGCGGCGGGTGCGTCAGGGAACCAGTTCCTA
ACGACGTCTCTTTATGTTGGCGATCTCGATTTCAACGTGACCGATTCGCA
GCTTTATGATCTGTTCAGCCAGGTCGGTCAAGTTCTGTCGGTTAGGGTTT
GTCGGGACCTGAGCACCAGGCGCTCACTCGGCTATGGTTACGTTAACTAC
GCCAACCCTGCAGATGCGGCAAGGGCACTGGATGTTCTTAACTTCACTCC
ACTTAATAATAAGTCCATTAGAATCATGTATTCCCATCGGGATCCTAGTA
TTCGGAAAAGCGGTACTGGGAACATATTTATCAAGAATTTGGACAAGTCT
ATTGATCACAAAGCATTACACGATACATTTTCTTCATTCGGAAACATTCT
TTCTTGTAAGATAGCTACTGATGGTTCTGGCCAGTCCAAAGGTTTCNGTT
TTGTGCAATTTGAGAACAAAGAATCTGCTCAAAATGCTATTTGATAGTTA
ATGGCATGCTTATTAATGATAAAACAGTGTTTGTTGGGCACTTTCTTTCG
TAGCAGGAAAAGAGAACTGTAGCAATTAAAACCAAATTTCATAACGTATT
TGTCAAAACCTTGCTGAGTCAACTACAGATGAGGATTTGAGGAATTTTTT
TGGTGAGTATGGAACAATTACCAGTGCANTANTGATGAGGGATGGAAATG
GAAATCCAAGGGNTTTTGGATTGGGGAATTTGAAAATGCAATGATGCTGC