EY711117

Overview
NameEY711117
Unique NameEY711117
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length924
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10507 contig Csv1_Contig10507:1..924. BLAST: Citrus Unigene V1 Contigs to SwissProt
Homology
BLAST of EY711117 vs. ExPASy Swiss-Prot
Match: HEXR_PSEAE (HTH-type transcriptional regulator hexR OS=Pseudomonas aeruginosa GN=hexR PE=4 SV=2)

HSP 1 Score: 173.711 bits (439), Expect = 1.303e-42
Identity = 94/218 (43.12%), Postives = 138/218 (63.30%), Query Frame = -3
Query:    5 NLLQHIAQSRHLLRKSELKVADHVLLDPAAVMHSSMADLAHSVGISEPTIVRFCRAIGCSGFQDLKLKLAQSLAAGASFGQFAIHEDDSVADYSLKIFDTTLHTLMEVREKLDPVELQKAVTAMSQAQRVEFYGFGASGAVAADAQHKFFRLLLTAAAYSDPHMQAMSAVTLKPTDVAICISQSGRSKDLLITANLVRESGATLITLCPRQTPLAELS 658
            NLL+ I      L K+E KVA+ +L +P      S+A LA +  +SEPT+ RFCR+ G SG+ +LK++LAQSLA+GA+F   A+ EDD    Y+ KIF  T+ +L    + LDP  + +AV  + QA+++ F+G GAS +VA DAQHKFFR  L  +A +D  MQ M A      D+ + IS +GR+++L+  A+L RE+GA+++ L    +PLA  S
Sbjct:    3 NLLEQIQSRLDELNKAERKVAEVILQNPQQATRFSIAALAQAAAVSEPTVNRFCRSFGMSGYPELKIQLAQSLASGAAFVTQAVAEDDGPEAYTRKIFSNTIASLDSAHKLLDPRVIDRAVDLLIQARQIHFFGLGASASVALDAQHKFFRFNLAVSAQADVLMQRMIASVAHTGDLFVVISYTGRTRELVEVAHLARENGASVLGLTAAGSPLARAS 220          
BLAST of EY711117 vs. ExPASy Swiss-Prot
Match: HEXR_ECOLI (HTH-type transcriptional regulator hexR OS=Escherichia coli (strain K12) GN=hexR PE=3 SV=2)

HSP 1 Score: 168.318 bits (425), Expect = 5.474e-41
Identity = 92/216 (42.59%), Postives = 131/216 (60.65%), Query Frame = -3
Query:   14 LNLLQHIAQSRHLLRKSELKVADHVLLDPAAVMHSSMADLAHSVGISEPTIVRFCRAIGCSGFQDLKLKLAQSLAAGASFGQFAIHEDDSVADYSLKIFDTTLHTLMEVREKLDPVELQKAVTAMSQAQRVEFYGFGASGAVAADAQHKFFRLLLTAAAYSDPHMQAMSAVTLKPTDVAICISQSGRSKDLLITANLVRESGATLITLCPRQTPLA 661
            +N+L+ I      L KSE KVA+ +L  P   +HSS+A +A    +SEPT+ RFCR++   GF D KL LAQSLA G  +    ++EDDSV  Y+ KIF++ + TL  VR  LD   + +AV  ++QA+++ F+G G+S AVA DA +KFFR  +      D  +Q MS +     DV + IS +GR+K+L+  A L RE+ A +I L    TPLA
Sbjct:    1 MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLISHTGRTKNLVELAQLARENDAMVIALTSAGTPLA 216          
BLAST of EY711117 vs. ExPASy Swiss-Prot
Match: GLK_BURTA (Bifunctional protein glk OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=glk PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 3.548e-40
Identity = 79/215 (36.74%), Postives = 128/215 (59.53%), Query Frame = -3
Query:   11 LLQHIAQSRHLLRKSELKVADHVLLDPAAVMHSSMADLAHSVGISEPTIVRFCRAIGCSGFQDLKLKLAQSLAAGASFGQFAIHEDDSVADYSLKIFDTTLHTLMEVREKLDPVELQKAVTAMSQAQRVEFYGFGASGAVAADAQHKFFRLLLTAAAYSDPHMQAMSAVTLKPTDVAICISQSGRSKDLLITANLVRESGATLITLCPRQTPLAE 655
            + + I Q R  L  +E +VAD  L  P ++++  + D+A    +S+PT++RFCR++GC G  D KLKLA  L          +H  D+  D+  K+ D T+  ++++RE L+   +++A+  ++ A+R+EFYG G S  VA DA +KFFR  +   AY D +MQA SA  L   DV + +S+SGR+ +LL   ++  ++GA +I +    TPLA+
Sbjct:  343 VFERIRQMRDALTPAERRVADLALNHPRSIINDPIVDIARKADVSQPTVIRFCRSLGCQGLSDFKLKLATGLTGTIPMSHSQVHLGDTATDFGAKVLDNTVSAILQLREHLNFEHVEQAIDILNNARRIEFYGLGNSNIVAQDAHYKFFRFGIPTIAYGDLYMQAASAALLGKGDVIVAVSKSGRAPELLRVLDVAMQAGAKVIAITSSNTPLAK 557          
BLAST of EY711117 vs. ExPASy Swiss-Prot
Match: GLK_BURPS (Bifunctional protein glk OS=Burkholderia pseudomallei GN=glk PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 3.548e-40
Identity = 79/215 (36.74%), Postives = 128/215 (59.53%), Query Frame = -3
Query:   11 LLQHIAQSRHLLRKSELKVADHVLLDPAAVMHSSMADLAHSVGISEPTIVRFCRAIGCSGFQDLKLKLAQSLAAGASFGQFAIHEDDSVADYSLKIFDTTLHTLMEVREKLDPVELQKAVTAMSQAQRVEFYGFGASGAVAADAQHKFFRLLLTAAAYSDPHMQAMSAVTLKPTDVAICISQSGRSKDLLITANLVRESGATLITLCPRQTPLAE 655
            + + I Q R  L  +E +VAD  L  P ++++  + D+A    +S+PT++RFCR++GC G  D KLKLA  L          +H  D+  D+  K+ D T+  ++++RE L+   +++A+  ++ A+R+EFYG G S  VA DA +KFFR  +   AY D +MQA SA  L   DV + +S+SGR+ +LL   ++  ++GA +I +    TPLA+
Sbjct:  343 VFERIRQMRDALTPAERRVADLALNHPRSIINDPIVDIARKADVSQPTVIRFCRSLGCQGLSDFKLKLATGLTGTIPMSHSQVHLGDTATDFGAKVLDNTVSAILQLREHLNFEHVEQAIDILNNARRIEFYGLGNSNIVAQDAHYKFFRFGIPTIAYGDLYMQAASAALLGKGDVIVAVSKSGRAPELLRVLDVAMQAGAKVIAITSSNTPLAK 557          
BLAST of EY711117 vs. ExPASy Swiss-Prot
Match: GLK_BURP1 (Bifunctional protein glk OS=Burkholderia pseudomallei (strain 1710b) GN=glk PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 3.548e-40
Identity = 79/215 (36.74%), Postives = 128/215 (59.53%), Query Frame = -3
Query:   11 LLQHIAQSRHLLRKSELKVADHVLLDPAAVMHSSMADLAHSVGISEPTIVRFCRAIGCSGFQDLKLKLAQSLAAGASFGQFAIHEDDSVADYSLKIFDTTLHTLMEVREKLDPVELQKAVTAMSQAQRVEFYGFGASGAVAADAQHKFFRLLLTAAAYSDPHMQAMSAVTLKPTDVAICISQSGRSKDLLITANLVRESGATLITLCPRQTPLAE 655
            + + I Q R  L  +E +VAD  L  P ++++  + D+A    +S+PT++RFCR++GC G  D KLKLA  L          +H  D+  D+  K+ D T+  ++++RE L+   +++A+  ++ A+R+EFYG G S  VA DA +KFFR  +   AY D +MQA SA  L   DV + +S+SGR+ +LL   ++  ++GA +I +    TPLA+
Sbjct:  343 VFERIRQMRDALTPAERRVADLALNHPRSIINDPIVDIARKADVSQPTVIRFCRSLGCQGLSDFKLKLATGLTGTIPMSHSQVHLGDTATDFGAKVLDNTVSAILQLREHLNFEHVEQAIDILNNARRIEFYGLGNSNIVAQDAHYKFFRFGIPTIAYGDLYMQAASAALLGKGDVIVAVSKSGRAPELLRVLDVAMQAGAKVIAITSSNTPLAK 557          
BLAST of EY711117 vs. ExPASy Swiss-Prot
Match: GLK_BURXL (Bifunctional protein glk OS=Burkholderia xenovorans (strain LB400) GN=glk PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 6.052e-40
Identity = 79/215 (36.74%), Postives = 128/215 (59.53%), Query Frame = -3
Query:   11 LLQHIAQSRHLLRKSELKVADHVLLDPAAVMHSSMADLAHSVGISEPTIVRFCRAIGCSGFQDLKLKLAQSLAAGASFGQFAIHEDDSVADYSLKIFDTTLHTLMEVREKLDPVELQKAVTAMSQAQRVEFYGFGASGAVAADAQHKFFRLLLTAAAYSDPHMQAMSAVTLKPTDVAICISQSGRSKDLLITANLVRESGATLITLCPRQTPLAE 655
            + + I Q R  L  +E +VAD  L  P ++++  + D+A    +S+PT++RFCR++GC G  D KLKLA  L          +H  D+  D+  K+ D T+  ++++RE L+   +++A+  ++ A+R+EFYG G S  VA DA +KFFR  +   AY D +MQA SA  L   DV + +S+SGR+ +LL   ++  ++GA +I +    TPLA+
Sbjct:  344 VFERIRQMRDALTPAERRVADLALNHPRSIINDPIVDIARKADVSQPTVIRFCRSLGCQGLSDFKLKLATGLTGTIPVSHSQVHLGDTATDFGAKVLDNTVSAILQLREHLNFEHVERAIDLLNGARRIEFYGLGNSNIVAQDAHYKFFRFGIPTIAYGDLYMQAASAALLGKGDVIVAVSKSGRAPELLRVLDVAMQAGAKVIAITSSNTPLAK 558          
BLAST of EY711117 vs. ExPASy Swiss-Prot
Match: GLK_BURS3 (Bifunctional protein glk OS=Burkholderia sp. (strain 383) GN=glk PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 7.904e-40
Identity = 79/215 (36.74%), Postives = 127/215 (59.07%), Query Frame = -3
Query:   11 LLQHIAQSRHLLRKSELKVADHVLLDPAAVMHSSMADLAHSVGISEPTIVRFCRAIGCSGFQDLKLKLAQSLAAGASFGQFAIHEDDSVADYSLKIFDTTLHTLMEVREKLDPVELQKAVTAMSQAQRVEFYGFGASGAVAADAQHKFFRLLLTAAAYSDPHMQAMSAVTLKPTDVAICISQSGRSKDLLITANLVRESGATLITLCPRQTPLAE 655
            + + I Q R  L  +E +VAD  L  P ++++  + D+A    +S+PT++RFCR++GC G  D KLKLA  L          +H  D+  D+  K+ D T+  ++++RE L+   ++ A+  ++ A+R+EFYG G S  VA DA +KFFR  +   AY D +MQA SA  L   DV + +S+SGR+ +LL   ++  ++GA +I +    TPLA+
Sbjct:  343 VFERIRQMRDALTPAERRVADLALNHPRSIINDPIVDIARKADVSQPTVIRFCRSLGCQGLSDFKLKLATGLTGTIPMSHSQVHLGDTATDFGAKVLDNTVSAILQLREHLNFEHVENAIEILNGARRIEFYGLGNSNIVAQDAHYKFFRFGIPTIAYGDLYMQAASAALLGKGDVIVAVSKSGRAPELLRVLDVAMQAGAKVIAITSSNTPLAK 557          
BLAST of EY711117 vs. ExPASy Swiss-Prot
Match: GLK_BURCA (Bifunctional protein glk OS=Burkholderia cenocepacia (strain AU 1054) GN=glk PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 7.904e-40
Identity = 79/215 (36.74%), Postives = 127/215 (59.07%), Query Frame = -3
Query:   11 LLQHIAQSRHLLRKSELKVADHVLLDPAAVMHSSMADLAHSVGISEPTIVRFCRAIGCSGFQDLKLKLAQSLAAGASFGQFAIHEDDSVADYSLKIFDTTLHTLMEVREKLDPVELQKAVTAMSQAQRVEFYGFGASGAVAADAQHKFFRLLLTAAAYSDPHMQAMSAVTLKPTDVAICISQSGRSKDLLITANLVRESGATLITLCPRQTPLAE 655
            + + I Q R  L  +E +VAD  L  P ++++  + D+A    +S+PT++RFCR++GC G  D KLKLA  L          +H  D+  D+  K+ D T+  ++++RE L+   ++ A+  ++ A+R+EFYG G S  VA DA +KFFR  +   AY D +MQA SA  L   DV + +S+SGR+ +LL   ++  ++GA +I +    TPLA+
Sbjct:  343 VFERIRQMRDALTPAERRVADLALNHPRSIINDPIVDIARKADVSQPTVIRFCRSLGCQGLSDFKLKLATGLTGTIPMSHSQVHLGDTATDFGAKVLDNTVSAILQLREHLNFEHVENAIEILNGARRIEFYGLGNSNIVAQDAHYKFFRFGIPTIAYGDLYMQAASAALLGKGDVIVAVSKSGRAPELLRVLDVAMQAGAKVIAITSSNTPLAK 557          
BLAST of EY711117 vs. ExPASy Swiss-Prot
Match: GLK_BURMA (Bifunctional protein glk OS=Burkholderia mallei GN=glk PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.348e-39
Identity = 78/215 (36.28%), Postives = 128/215 (59.53%), Query Frame = -3
Query:   11 LLQHIAQSRHLLRKSELKVADHVLLDPAAVMHSSMADLAHSVGISEPTIVRFCRAIGCSGFQDLKLKLAQSLAAGASFGQFAIHEDDSVADYSLKIFDTTLHTLMEVREKLDPVELQKAVTAMSQAQRVEFYGFGASGAVAADAQHKFFRLLLTAAAYSDPHMQAMSAVTLKPTDVAICISQSGRSKDLLITANLVRESGATLITLCPRQTPLAE 655
            + + I Q R  L  +E +VAD  L  P ++++  + ++A    +S+PT++RFCR++GC G  D KLKLA  L          +H  D+  D+  K+ D T+  ++++RE L+   +++A+  ++ A+R+EFYG G S  VA DA +KFFR  +   AY D +MQA SA  L   DV + +S+SGR+ +LL   ++  ++GA +I +    TPLA+
Sbjct:  343 VFERIRQMRDALTPAERRVADLALNHPRSIINDPIVNIARKADVSQPTVIRFCRSLGCQGLSDFKLKLATGLTGTIPMSHSQVHLGDTATDFGAKVLDNTVSAILQLREHLNFEHVEQAIDILNNARRIEFYGLGNSNIVAQDAHYKFFRFGIPTIAYGDLYMQAASAALLGKGDVIVAVSKSGRAPELLRVLDVAMQAGAKVIAITSSNTPLAK 557          
BLAST of EY711117 vs. ExPASy Swiss-Prot
Match: Y211_THETN (Uncharacterized HTH-type transcriptional regulator TTE0211 OS=Thermoanaerobacter tengcongensis GN=TTE0211 PE=4 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 4.644e-32
Identity = 82/202 (40.59%), Postives = 116/202 (57.43%), Query Frame = -3
Query:   11 SELKVADHVLLDPAAVMHSSMADLAHSVGISEPTIVRFCRAIGCSGFQDLKLKLAQSLAAGASFGQFAIHEDDSVADYSLKIFDTTLHTLMEVREKLDPVELQKAVTAMSQAQRVEFYGFGASGAVAADAQHKFFRLLLTAAAYSDPHMQAMSAVTLKPTDVAICISQSGRSKDLLITANLVRESGATLITLCP-RQTPLAE 613
            SE K+A ++L +P  V   S+ +LA++   SE +I+RFCR IG  GFQ+LK+K+A SLA         I  +D V     KI +     +      L+  EL KA  A++ A +++FYG  ASG VA DA  KF R+ +   AY D H+Q  SAV LK  DVA  IS SG +K+++      +E+GAT I+L    Q+PLA+
Sbjct:   18 SEAKIAKYILENPTVVTELSVNELANACDTSEASIIRFCRTIGLKGFQELKIKIAVSLAKQTRKLDGGITSEDDVMAVIQKIANFNKQAIDSTIAVLNAEELTKAAEALANANKIDFYGVAASGVVAYDAMLKFSRINIPCTAYQDTHLQLTSAVNLKKGDVAFGISYSGATKEIVEAIQTAKEAGATTISLTKYGQSPLAK 219          
The following BLAST results are available for this feature:
BLAST of EY711117 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
HEXR_PSEAE1.303e-4243.12HTH-type transcriptional regulator hexR OS=Pseudom... [more]
HEXR_ECOLI5.474e-4142.59HTH-type transcriptional regulator hexR OS=Escheri... [more]
GLK_BURTA3.548e-4036.74Bifunctional protein glk OS=Burkholderia thailande... [more]
GLK_BURPS3.548e-4036.74Bifunctional protein glk OS=Burkholderia pseudomal... [more]
GLK_BURP13.548e-4036.74Bifunctional protein glk OS=Burkholderia pseudomal... [more]
GLK_BURXL6.052e-4036.74Bifunctional protein glk OS=Burkholderia xenovoran... [more]
GLK_BURS37.904e-4036.74Bifunctional protein glk OS=Burkholderia sp. (stra... [more]
GLK_BURCA7.904e-4036.74Bifunctional protein glk OS=Burkholderia cenocepac... [more]
GLK_BURMA1.348e-3936.28Bifunctional protein glk OS=Burkholderia mallei GN... [more]
Y211_THETN4.644e-3240.59Uncharacterized HTH-type transcriptional regulator... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-003-H12-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711117 ID=EY711117; Name=EY711117; organism=Citrus sinensis; type=EST; length=924bp
TTCTCGACAGCTCCGCCAATGGCGTCTGTCTCGGGCACAGGGTAATCAGG
GTCGCGCCGCTTTCACGCACCAGGTTGGCGGTGATCAGCAAATCCTTGGA
GCGGCCGGACTGGGAAATGCAGATCGCCACGTCGGTGGGCTTCAACGTCA
CTGCCGACATCGCCTGCATGTGCGGGTCGCTGTAGGCCGCCGCCGTCAGC
AGCAAACGGAAGAACTTGTGCTGGGCATCCGCCGCCACCGCACCGGACGC
GCCGAAACCATAGAACTCCACGCGCTGGGCCTGGGACATGGCGGTCACGG
CTTTTTGCAGCTCTACCGGGTCAAGCTTTTCCCGCACTTCCATCAGGGTA
TGCAGGGTGGTGTCGAAGATTTTCAGGCTGTAGTCGGCGACGGAGTCGTC
TTCGTGAATCGCGAACTGCCCGAAGCTCGCACCGGCGGCGAGGCTCTGGG
CCAGCTTGAGCTTCAAGTCCTGGAACCCGGAGCAACCAATGGCGCGGCAG
AAGCGCACGATGGTCGGCTCGCTGATGCCCACGCTGTGGGCCAGGTCGGC
CATGGAACTGTGCATCACAGCCGCAGGGTCAAGCAGCACGTGATCGGCAA
CCTTGAGTTCCGATTTGCGTAACAGGTGGCGCGACTGGGCGATATGTTGC
AACAGGTTCAAAGGGCTGGACTCTTGTTATTGGCAGACGCCAGGGATGTA
GCAAGCTTGTAGTTATACTACAAGAATTACCGATTTGCCCGCTCGATGCA
TCACTTAATCACGCTGCTGCCCGCTGAAACAGCGGGCAGGACCGATGTAG
CCCCGCGTGCGGCTTGGGCTCAACTACGGAAATACGCATTTTTTCGTACA
AATCCGCCAGACCGTCCGCTTCCACCGGCGACTGATCAATAGCCTTGCAC
TCATCNATTGCTCGGCCCGCAGAA
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