EY711116

Overview
NameEY711116
Unique NameEY711116
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length911
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY711116 vs. ExPASy Swiss-Prot
Match: Y3739_ARATH (Uncharacterized membrane protein At3g27390 OS=Arabidopsis thaliana GN=At3g27390 PE=1 SV=1)

HSP 1 Score: 351.288 bits (900), Expect = 4.506e-96
Identity = 184/306 (60.13%), Postives = 226/306 (73.86%), Query Frame = 2 
Query:   14 TIKHSFTIVRDFKDVCFHSYFSLMDDLRQKQAPDGKYYEIRXXXXXXXXXXXXXXXXXDVPVISVVALCKSPYMLFKGWHRLFHDLIGREGPFLETICVPLAGLAIILWPLAVVGAVLGSMVTSIFLGAYAGVVVYQESSLWFGLRYIIAALSIYDEYSNDILDMPEGSCFPRPQYRKKAD--LXXXXXXXXXXXXKDPPS-RTSSLRKP-IDLKPLELLERLFKECQRHGEIWVSEGLITAKDIEDAKSNSGSQVVSIGLPAYCLLQALLRSAMXN---LREYC*VTALLRY*LKQTKDVSFDWF 910
            T++ SFT+VRDFKDVCFHSYFSLMD+L+Q   PD KYYEIR                 D PVIS+VA+CKSPYMLFKGWHRLFHDLIGREGPFLET+CVP+AGLAI+LWPLAV GAV+GS+++SIFLGAYAGVV YQESS ++GL YI+A++SIYDEYS DILD+PEGSCFPRP+YR+K +               K+  S R  S+R P ID+KPL+LL  LF EC+R+GE+  ++GLI +KDIE+A+S+ GSQV+S+GLPAY LL  +LRS   N   L     VT +    + + KDV FDWF
Sbjct:  138 TMQRSFTVVRDFKDVCFHSYFSLMDELKQS-CPDRKYYEIRLLQLPGALVVSVLGILVDPPVISLVAICKSPYMLFKGWHRLFHDLIGREGPFLETMCVPIAGLAILLWPLAVTGAVIGSVISSIFLGAYAGVVSYQESSFYYGLCYIVASVSIYDEYSTDILDLPEGSCFPRPKYRRKDEEPTPFSGPVPRLGSVKNASSMRGGSVRVPMIDIKPLDLLNELFVECRRYGEVLATKGLINSKDIEEARSSKGSQVISVGLPAYGLLYEILRSVKANSSGLLLSDGVTEITT--MNRPKDVFFDWF 440
The following BLAST results are available for this feature:
BLAST of EY711116 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y3739_ARATH4.506e-9660.13Uncharacterized membrane protein At3g27390 OS=Arab... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-702-003-H11-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711116 ID=EY711116; Name=EY711116; organism=Citrus sinensis; type=EST; length=911bp
CCACGCGTCCGGCACGATTAAACACAGCTTCACTATTGTCAGAGATTTTA
AAGATGTCTGTTTCCATTCCTACTTTTCACTTATGGATGATCTGCGACAG
AAACAGGCTCCAGATGGAAAATATTATGAGATAAGATTGCTCTATATTCC
TGGTGCCATCATTGCTGGGGGGCTTGGTGTCCTGATTGATGTGCCAGTGA
TCTCAGTTGTTGCCCTATGCAAAAGCCCTTATATGCTCTTTAAGGGGTGG
CATCGTTTGTTTCATGACCTTATAGGTCGAGAAGGGCCTTTCTTAGAGAC
TATATGTGTACCATTAGCTGGCCTTGCTATCATACTCTGGCCATTGGCTG
TTGTTGGGGCAGTTTTGGGCTCCATGGTGACCAGTATCTTCCTTGGTGCT
TATGCAGGGGTGGTTGTTTATCAGGAATCCTCCCTTTGGTTCGGGCTTCG
CTATATTATTGCAGCCTTGTCAATTTATGATGAATACAGCAATGACATAC
TTGACATGCCAGAAGGATCCTGCTTTCCTAGGCCCCAGTATCGAAAGAAG
GCAGATCTCTCGCGGACCAGTACTTTCTCAAGGCCTAGCTCTTTCAAAGA
TCCTCCCTCTCGCACCAGTTCACTTAGGAAGCCAATTGATTTGAAGCCAC
TTGAGCTTCTTGAGCGCTTATTTAAGGAGTGTCAACGCCATGGCGAGATC
TGGGTTTCTGAAGGACTAATAACAGCTAAAGACATTGAAGATGCCAAATC
TAATTCTGGTAGCCAAGTGGTTAGTATAGGGTTGCCAGCATATTGTCTTC
TCCAGGCACTCCTGCGCTCTGCAATGGNCAATCTCCGGGAATATTGTTGA
GTGACAGCGTTACTGAGATACTAGCTCAAACAGACCAAGGACGTGTCCTT
TGATTGGTTTT
back to top