EY711081

Overview
NameEY711081
Unique NameEY711081
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length589
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10506 contig Csv1_Contig10506:1..589. BLAST: Citrus Unigene V1 Contigs to SwissProt
Homology
[Close]
BLAST of EY711081 vs. ExPASy Swiss-Prot
Match: SOXA_RHOSG (Dibenzothiophene desulfurization enzyme A OS=Rhodococcus sp. (strain IGTS8) GN=soxA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.392e-12
Identity = 41/99 (41.41%), Postives = 59/99 (59.60%), Query Frame = -3 
Query:    6 HGLWTHPRDTSTQYKTLEYWTELAQLLERGLFDGLFIADIVGVYDVYQNSVDVPLKESIQLPVN-DPLLLVSAMAAVTKNLGFGLTANLTYEPPYLFAR 299
            HG W H  D S  + + +Y+  +A+ LERG FD LF+ D + V D Y +++D  +    Q  V  +P  +V+ MAAVT++LG G T + TY PPY  AR
Sbjct:   22 HGAWRHT-DASNDFLSGKYYQHIARTLERGKFDLLFLPDGLAVEDSYGDNLDTGVGLGGQGAVALEPASVVATMAAVTEHLGLGATISATYYPPYHVAR 119
The following BLAST results are available for this feature:
BLAST of EY711081 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
SOXA_RHOSG5.392e-1241.41Dibenzothiophene desulfurization enzyme A OS=Rhodo... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-702-003-E10-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711081 ID=EY711081; Name=EY711081; organism=Citrus sinensis; type=EST; length=589bp
ATGCGCCGGGCGAACAGATACGGCGGTTCGTAGGTGAGGTTGGCGGTCAG
GCCGAAGCCGAGGTTTTTGGTCACCGCCGCCATGGCCGAGACCAGCAGCA
ACGGGTCGTTGACCGGCAGCTGGATAGACTCTTTGAGCGGCACATCCACC
GAATTCTGGTAGACGTCGTACACGCCGACGATGTCGGCGATGAACAGCCC
GTCGAACAGTCCGCGCTCCAGCAGCTGTGCCAGTTCGGTCCAGTATTCGA
GGGTCTTGTATTGAGTCGAAGTGTCCCGTGGATGGGTCCACAGGCCATGG
TTGATGTGCCCGATGCAGTTCATGTTGAAGGCATTGAGCAGGATCTTTTT
CTTTGCCATCAGATAGTCCCCCGCAGTGGCGGGTTTTCATCGTTGAGGTA
GTAATTGCCCACCGCGTGGTACTTCCAGCGCACCGGGTCGTGCAGGGTGT
GCACCCGAGCGTTGCGCCAGTGGCGGTCCAGACCGTGTTCGGCGAGGGTG
GCCTGGCTGCCCGCGAGTTCGAACAGGGTGCTGCCGGCGGCCAGGGAAAT
CTCGGTGCTCAGGGCGCGCACTTCAGCGACGGCGATGGA
back to top